Rorug03G0093000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005102
Physical Location & Seq
Forward (+)
7253857 .. 7254465
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0093000.1

Sequence Viewer

Length: 609 bp
ATGAAAGCCTATGAGACTGTTGACGGTTCTGAGCCTCCTCGCTCTCGGAAGTGCAGAAACATCTGCCTTGCGGTGACCGCCGGCACTGTCGTAATCGTTCTCATTCTGGTCGTACTCTGTTTGACGGTGTTCAAAGCAAAGGACCCGGAAATAACGATGAACTCAGTCGTTTTGAGGAACTTGCAAGCGGACTTTAACGTCAACAAATTCAGCGTCGACGTGAATATCACTCTCGACGTGCACTTGACGTTGAAGAACCCGAACAAGGTGGGAGTCAAGTACACCAACAGCACCGCGTCGTTGAACTACAGGGGTGAGCTGGTGGGCGAGGTCCCAATCGGAGCCGGAAAGATTTCCGCGGATCAGACCAAGCCCTTGGATATTACCCTCACCGTTATGGGCGACCGGTTCCTCGGAAAAACACAGGAGCTTTTACCTGATGTGGTCGCCGGTACGATCCCGCTCGACACTGTCGCCAAAATCTCCGGCAAAGTCTCTATCTTGGGTATCTTTAAGGTTCATGTGGTCTCGACCACCTCATGCGATATCAATGTCTATGTCAGAAACAACACCATCGGAAAAGTGTGTACGTACAAGACTAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

21.87

Weight (kDa)

9.19

Isoelectric Point (pI)

19.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 81 - 175 6.3e-12 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 607
AasI GACNNNNNNGTC 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 463
AccI GTMKAC 1 cut(s) 216
AccII CGCG 2 cut(s) 296, 359
AciI CCGC 7 cut(s) 71, 78, 188, 294, 357, 359, 461
AclWI GGATC 2 cut(s) 369, 451
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 5 cut(s) 114, 281, 454, 589, 593
AfiI CCNNNNNNNGG 1 cut(s) 265
AgeI ACCGGT 1 cut(s) 405
AgsI TTSAA 3 cut(s) 133, 253, 304
AjiI CACGTC 2 cut(s) 220, 238
AluBI AGCT 2 cut(s) 319, 430
AluI AGCT 2 cut(s) 319, 430
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 3 cut(s) 8, 499, 532
Alw44I GTGCAC 1 cut(s) 239
AlwI GGATC 2 cut(s) 369, 451
ApaLI GTGCAC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 206
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AsiGI ACCGGT 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 352
AspS9I GGNCC 2 cut(s) 142, 331
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 3 cut(s) 85, 326, 382
AvaII GGWCC 2 cut(s) 142, 331
BaeGI GKGCMC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 243
BccI CCATC 1 cut(s) 581
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 3 cut(s) 8, 499, 532
BfmI CTRYAG 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 2 cut(s) 142, 331
BmgBI CACGTC 2 cut(s) 220, 238
BmgT120I GGNCC 2 cut(s) 142, 331
BmiI GGNNCC 4 cut(s) 144, 333, 343, 410
BmrFI CCNGG 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 591
BsaI GGTCTC 1 cut(s) 532
BsaJI CCNNGG 3 cut(s) 357, 375, 412
BsaWI WCCGGW 1 cut(s) 405
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse118I RCCGGY 3 cut(s) 80, 405, 449
BseDI CCNNGG 3 cut(s) 357, 375, 412
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 21, 177
BseRI GAGGAG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 243
BsgI GTGCAG 1 cut(s) 73
Bsh1236I CGCG 2 cut(s) 296, 359
Bsh1285I CGRYCG 1 cut(s) 406
BshTI ACCGGT 1 cut(s) 405
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 6 cut(s) 81, 146, 345, 406, 450, 486
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 3 cut(s) 8, 499, 532
BsmFI GGGAC 1 cut(s) 317
Bso31I GGTCTC 1 cut(s) 532
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 2 cut(s) 361, 456
BspACI CCGC 7 cut(s) 71, 78, 188, 294, 357, 359, 461
BspCNI CTCAG 2 cut(s) 22, 176
BspFNI CGCG 2 cut(s) 296, 359
BspLI GGNNCC 4 cut(s) 144, 333, 343, 410
BspPI GGATC 2 cut(s) 369, 451
BspTNI GGTCTC 1 cut(s) 532
BsrBI CCGCTC 1 cut(s) 463
BsrFI RCCGGY 3 cut(s) 80, 405, 449
BssAI RCCGGY 3 cut(s) 80, 405, 449
BssECI CCNNGG 3 cut(s) 357, 375, 412
BssMI GATC 2 cut(s) 361, 456
BssT1I CCWWGG 1 cut(s) 375
Bst4CI ACNGT 6 cut(s) 19, 26, 88, 127, 394, 472
BstBAI YACGTR 1 cut(s) 591
BstC8I GCNNGC 2 cut(s) 82, 186
BstDEI CTNAG 2 cut(s) 30, 163
BstDSI CCRYGG 1 cut(s) 357
BstEII GGTNACC 1 cut(s) 73
BstFNI CGCG 2 cut(s) 296, 359
BstKTI GATC 2 cut(s) 364, 459
BstMAI GTCTC 3 cut(s) 8, 499, 532
BstMBI GATC 2 cut(s) 361, 456
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstPI GGTNACC 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 307
BstSLI GKGCMC 1 cut(s) 243
BstSNI TACGTA 1 cut(s) 591
BstUI CGCG 2 cut(s) 296, 359
BstXI CCANNNNNNTGG 1 cut(s) 376
BtgI CCRYGG 1 cut(s) 357
BtrI CACGTC 2 cut(s) 220, 238
BtsIMutI CAGTG 2 cut(s) 84, 468
Cac8I GCNNGC 2 cut(s) 82, 186
Cfr10I RCCGGY 3 cut(s) 80, 405, 449
Cfr13I GGNCC 2 cut(s) 142, 331
Cfr42I CCGCGG 1 cut(s) 360
CseI GACGC 2 cut(s) 202, 285
Csp6I GTAC 5 cut(s) 113, 280, 453, 588, 592
CspAI ACCGGT 1 cut(s) 405
CviAII CATG 2 cut(s) 521, 540
CviJI RGCY 6 cut(s) 8, 34, 319, 344, 373, 430
CviKI_1 RGCY 6 cut(s) 8, 34, 319, 344, 373, 430
CviQI GTAC 5 cut(s) 113, 280, 453, 588, 592
DdeI CTNAG 2 cut(s) 30, 163
DpnI GATC 2 cut(s) 363, 458
DpnII GATC 2 cut(s) 361, 456
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
Eco105I TACGTA 1 cut(s) 591
Eco130I CCWWGG 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 532
Eco32I GATATC 1 cut(s) 547
Eco47I GGWCC 2 cut(s) 142, 331
Eco91I GGTNACC 1 cut(s) 73
EcoO109I RGGNCCY 2 cut(s) 142, 331
EcoO65I GGTNACC 1 cut(s) 73
EcoRV GATATC 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 2 cut(s) 524, 543
FaiI YATR 6 cut(s) 12, 398, 522, 541, 558, 607
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 520, 539
FauI CCCGC 1 cut(s) 468
FblI GTMKAC 1 cut(s) 216
HapII CCGG 6 cut(s) 81, 146, 345, 406, 450, 486
HgaI GACGC 2 cut(s) 202, 285
Hin1II CATG 2 cut(s) 524, 543
HincII GTYRAC 3 cut(s) 22, 202, 217
HindII GTYRAC 3 cut(s) 22, 202, 217
HinfI GANTC 1 cut(s) 273
HpaII CCGG 6 cut(s) 81, 146, 345, 406, 450, 486
HphI GGTGA 3 cut(s) 85, 326, 382
Hpy166II GTNNAC 6 cut(s) 22, 202, 217, 241, 282, 588
Hpy188I TCNGA 7 cut(s) 31, 48, 341, 366, 416, 563, 578
Hpy188III TCNNGA 2 cut(s) 233, 529
Hpy8I GTNNAC 6 cut(s) 22, 202, 217, 241, 282, 588
Hpy99I CGWCG 4 cut(s) 218, 221, 239, 301
HpyCH4III ACNGT 6 cut(s) 19, 26, 88, 127, 394, 472
HpyCH4IV ACGT 5 cut(s) 198, 219, 237, 248, 590
HpyCH4V TGCA 3 cut(s) 54, 184, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 30, 163
HpySE526I ACGT 5 cut(s) 198, 219, 237, 248, 590
Hsp92II CATG 2 cut(s) 524, 543
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
KspI CCGCGG 1 cut(s) 360
Kzo9I GATC 2 cut(s) 361, 456
LmnI GCTCC 2 cut(s) 341, 427
MaeII ACGT 5 cut(s) 198, 219, 237, 248, 590
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 363, 458
MbiI CCGCTC 1 cut(s) 463
MboI GATC 2 cut(s) 361, 456
MboII GAAGA 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 2 cut(s) 206, 602
MlyI GAGTC 1 cut(s) 282
MnlI CCTC 7 cut(s) 45, 48, 168, 322, 398, 422, 547
MroNI GCCGGC 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 352
MseI TTAA 2 cut(s) 195, 513
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 6 cut(s) 81, 146, 345, 406, 450, 486
MspR9I CCNGG 1 cut(s) 146
MvnI CGCG 2 cut(s) 296, 359
MwoI GCNNNNNNNGC 1 cut(s) 77
NaeI GCCGGC 1 cut(s) 82
NciI CCSGG 1 cut(s) 146
NdeII GATC 2 cut(s) 361, 456
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 2 cut(s) 524, 543
NlaIV GGNNCC 4 cut(s) 144, 333, 343, 410
NmuCI GTSAC 1 cut(s) 73
PdiI GCCGGC 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 352
PflFI GACNNNGTC 1 cut(s) 470
PinAI ACCGGT 1 cut(s) 405
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
Ppu21I YACGTR 1 cut(s) 591
PpuMI RGGWCCY 2 cut(s) 142, 331
PsiI TTATAA 1 cut(s) 607
Psp5II RGGWCCY 2 cut(s) 142, 331
PspEI GGTNACC 1 cut(s) 73
PspN4I GGNNCC 4 cut(s) 144, 333, 343, 410
PspPI GGNCC 2 cut(s) 142, 331
PspPPI RGGWCCY 2 cut(s) 142, 331
PsyI GACNNNGTC 1 cut(s) 470
RsaI GTAC 5 cut(s) 114, 281, 454, 589, 593
RsaNI GTAC 5 cut(s) 113, 280, 453, 588, 592
RseI CAYNNNNRTG 1 cut(s) 395
SacII CCGCGG 1 cut(s) 360
SalI GTCGAC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 195, 513
Sau3AI GATC 2 cut(s) 361, 456
Sau96I GGNCC 2 cut(s) 142, 331
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 243
SfcI CTRYAG 1 cut(s) 307
Sfr303I CCGCGG 1 cut(s) 360
SgrBI CCGCGG 1 cut(s) 360
SgrDI CGTCGACG 1 cut(s) 215
SinI GGWCC 2 cut(s) 142, 331
SmiMI CAYNNNNRTG 1 cut(s) 395
SnaBI TACGTA 1 cut(s) 591
Sse9I AATT 2 cut(s) 206, 602
SsiI CCGC 7 cut(s) 71, 78, 188, 294, 357, 359, 461
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 6 cut(s) 19, 26, 88, 127, 394, 472
TaiI ACGT 5 cut(s) 201, 222, 240, 251, 593
TaqI TCGA 4 cut(s) 216, 234, 465, 530
TasI AATT 2 cut(s) 206, 602
TatI WGTACW 1 cut(s) 279
Tru1I TTAA 2 cut(s) 195, 513
Tru9I TTAA 2 cut(s) 195, 513
TscAI CASTG 2 cut(s) 91, 475
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 3 cut(s) 17, 173, 509
TspRI CASTG 2 cut(s) 91, 475
Tth111I GACNNNGTC 1 cut(s) 470
VneI GTGCAC 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 142, 331
XapI RAATTY 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.