Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005102

Physical Location & Seq

Genomic Coordinates Forward (+)

14130929 .. 14135519

Gene Structure 4591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG163200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGATTGCTACTAGCAAGGAAGATGGGAAATTGAGTGATAGGAAAATGGAAGGAGATGAGGGTATGAGGACATTGGAGTGCCTAAGAGGAAGACTACTGGCAGAGAGACAAGCTTCAAGGGTGGCAAAAGAGGATGCAGAATCCATGGCCAAGAAGTTGATAGAGCTACAGAACAGGCTGAAAGAAGAGACGAAATTGAAGAATAAAGCTGAAAAGAAGCTCAAATTCTTGAAGACAAAGCTTGAATCTTTGAAACCTTCTTCTGTACCAGTTGAATCAGAACAGTCAAGTTCCTCCGAATGTAGTGAAACATCTAGAAGGCAATCCACAAGTACTTCAAGCTCCAATAACCCAGAAGACAATGAGCCCAAGCCCACAGTCAAAGACTCAAACTTCTCAGGAACATCCAGTCAAGTATTGAAGTCCACCACATCTGAGAAAAGTCATGAGAGTGATCTTTTCACTGAAGAAAATTCAACTGCTCAAAGTACTAGTCCTGCTTCCAGTTCCACTTCTAGCTTAGAATTTCCTTCCCCAGAATACTCGGGTCATAAATCTGAAGATTCAAAGAGTGGTGATCATATTAGGTATGTAATTCCAATCAAGGCACCATTGCACCAGCTTTTAACCCAACTCTTAGTTACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

23.84

Weight (kDa)

6.47

Isoelectric Point (pI)

68.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37300 AT2G37300 AT2G37300 AT2G37300 AT2G37300 AT2G37300
fragaria_vesca	FvH4_6g14910 FvH4_6g14910 FvH4_6g14910
malus_domestica	MD04G1111000.v1.1 MD12G1129800.v1.1
prunus_persica	Prupe.6G245100_v2.0.a1
pyrus_communis	pycom04g10420 pycom12g12600
rosa_chinensis	RchiOBHm_Chr3g0468111
rosa_laevigata	RLG00000024448
rosa_multiflora	Rmu_sc0003659.1_g000013
rosa_roxburghii	Rroxscaffold_6G00413020
rosa_rugosa	Rorug03G0092800 Rorug03G0092900 Rorug03G0093000 Rorug03G0093100 Rorug03G0093200 Rorug03G0093200 Rorug03G0093200
rosa_samantha	Rh3AG141200 Rh3BG162700 Rh3CG162600 Rh3DG163200
rosa_wichuraiana	Rw3G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	607
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	3 cut(s)	224, 472, 524
AcuI	CTGAAG	2 cut(s)	486, 579
AfaI	GTAC	3 cut(s)	267, 334, 490
AhlI	ACTAGT	1 cut(s)	491
AluBI	AGCT	8 cut(s)	113, 166, 209, 220, 241, 342, 519, 622
AluI	AGCT	8 cut(s)	113, 166, 209, 220, 241, 342, 519, 622
Alw26I	GTCTC	2 cut(s)	100, 182
Ama87I	CYCGRG	1 cut(s)	544
AoxI	GGCC	1 cut(s)	147
ApoI	RAATTY	3 cut(s)	224, 472, 524
ArsI	GACNNNNNNTTYG	2 cut(s)	478, 510
AsuHPI	GGTGA	1 cut(s)	587
AvaI	CYCGRG	1 cut(s)	544
BalI	TGGCCA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	607
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	3 cut(s)	97, 239, 363
BccI	CCATC	1 cut(s)	17
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	2 cut(s)	100, 182
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	4 cut(s)	12, 315, 492, 516
BfmI	CTRYAG	1 cut(s)	167
BmcAI	AGTACT	2 cut(s)	334, 490
BmeT110I	CYCGRG	1 cut(s)	544
BmiI	GGNNCC	1 cut(s)	609
BmsI	GCATC	1 cut(s)	124
BpiI	GAAGAC	3 cut(s)	97, 239, 363
BsaJI	CCNNGG	1 cut(s)	144
Bse1I	ACTGG	4 cut(s)	102, 269, 408, 504
Bse3DI	GCAATG	1 cut(s)	611
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	139, 404
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	2 cut(s)	411, 426
BseNI	ACTGG	4 cut(s)	102, 269, 408, 504
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	607
BsiHKCI	CYCGRG	1 cut(s)	544
BsmAI	GTCTC	2 cut(s)	100, 182
BsmBI	CGTCTC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	454, 577
Bsp19I	CCATGG	1 cut(s)	144
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	410, 427
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	609
BspT107I	GGYRCC	1 cut(s)	607
BsrDI	GCAATG	1 cut(s)	611
BsrI	ACTGG	4 cut(s)	102, 269, 408, 504
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	454, 577
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	285, 379
Bst6I	CTCTTC	1 cut(s)	180
BstDEI	CTNAG	5 cut(s)	83, 397, 435, 520, 637
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	139, 404
BstKTI	GATC	2 cut(s)	457, 580
BstMAI	GTCTC	2 cut(s)	100, 182
BstMBI	GATC	2 cut(s)	454, 577
BstSFI	CTRYAG	1 cut(s)	167
BstV2I	GAAGAC	3 cut(s)	97, 239, 363
BsuRI	GGCC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	139, 404
BtsIMutI	CAGTG	1 cut(s)	462
CciI	TCATGA	1 cut(s)	445
Csp6I	GTAC	3 cut(s)	266, 333, 489
CviAII	CATG	2 cut(s)	145, 446
CviQI	GTAC	3 cut(s)	266, 333, 489
DdeI	CTNAG	5 cut(s)	83, 397, 435, 520, 637
DpnI	GATC	2 cut(s)	456, 579
DpnII	GATC	2 cut(s)	454, 577
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	369
Eco57I	CTGAAG	2 cut(s)	486, 579
Eco88I	CYCGRG	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	2 cut(s)	148, 449
FaiI	YATR	6 cut(s)	65, 146, 447, 552, 582, 591
FatI	CATG	2 cut(s)	144, 445
FbaI	TGATCA	1 cut(s)	577
FokI	GGATG	2 cut(s)	146, 391
FriOI	GRGCYC	1 cut(s)	369
FspBI	CTAG	4 cut(s)	12, 315, 492, 516
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	148, 449
HindIII	AAGCTT	2 cut(s)	111, 239
HinfI	GANTC	5 cut(s)	140, 245, 275, 386, 563
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	4 cut(s)	280, 298, 436, 559
Hpy188III	TCNNGA	4 cut(s)	229, 315, 399, 446
Hpy8I	GTNNAC	1 cut(s)	426
HpyAV	CCTTC	4 cut(s)	44, 267, 312, 540
HpyCH4III	ACNGT	2 cut(s)	285, 379
HpyCH4V	TGCA	2 cut(s)	137, 616
HpyF3I	CTNAG	5 cut(s)	83, 397, 435, 520, 637
Hsp92II	CATG	2 cut(s)	148, 449
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	2 cut(s)	454, 577
LmnI	GCTCC	1 cut(s)	347
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	4 cut(s)	12, 315, 492, 516
MaeIII	GTNAC	1 cut(s)	640
MalI	GATC	2 cut(s)	456, 579
MboI	GATC	2 cut(s)	454, 577
MboII	GAAGA	9 cut(s)	32, 102, 197, 211, 244, 252, 368, 479, 572
MhlI	GDGCHC	1 cut(s)	369
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	7 cut(s)	29, 194, 224, 472, 524, 594, 646
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	5 cut(s)	52, 60, 80, 124, 304
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	626
MslI	CAYNNNNRTG	2 cut(s)	76, 450
Msp20I	TGGCCA	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	454, 577
NlaIII	CATG	2 cut(s)	148, 449
NlaIV	GGNNCC	1 cut(s)	609
PagI	TCATGA	1 cut(s)	445
PfeI	GAWTC	4 cut(s)	140, 245, 275, 563
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	609
RsaI	GTAC	3 cut(s)	267, 334, 490
RsaNI	GTAC	3 cut(s)	266, 333, 489
RseI	CAYNNNNRTG	2 cut(s)	76, 450
SaqAI	TTAA	1 cut(s)	626
Sau3AI	GATC	2 cut(s)	454, 577
ScaI	AGTACT	2 cut(s)	334, 490
SchI	GAGTC	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	1 cut(s)	124
SfcI	CTRYAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	2 cut(s)	76, 450
SpeI	ACTAGT	1 cut(s)	491
Sse9I	AATT	7 cut(s)	29, 194, 224, 472, 524, 594, 646
SspMI	CTAG	4 cut(s)	12, 315, 492, 516
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	285, 379
TasI	AATT	7 cut(s)	29, 194, 224, 472, 524, 594, 646
TatI	WGTACW	2 cut(s)	332, 488
TfiI	GAWTC	4 cut(s)	140, 245, 275, 563
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TscAI	CASTG	1 cut(s)	469
TspRI	CASTG	1 cut(s)	469
XapI	RAATTY	3 cut(s)	224, 472, 524
XbaI	TCTAGA	1 cut(s)	314
XspI	CTAG	4 cut(s)	12, 315, 492, 516
ZrmI	AGTACT	2 cut(s)	334, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.