Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005102

Physical Location & Seq

Genomic Coordinates Forward (+)

19565489 .. 19566904

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1111000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACAGCTACTACTGGCATGGAAGATGGAACATGGAGTGACGGGAAGATGGAAGGAGATGGTGGTTTGAGGACTTTGGAGTGCCTCAGAGGGAGACTGCTGGCAGAGAGGCAAGCTTCTAGGGTTGCAAAAGAGGATGCAGAACTCATTGGCAAGAAGTTAGTAGAACTACAGAAGCAGCTCAAAGAAGAGATCAAACTGAAGGAAAAAGCAGAAAAGAAGCTCAAATATTTGAAGAAAAAGCTTGAATCTTTGAATATTTCCTCCAAAAATAGTGAAAAATCTTGTACACAATCCACTACTACTTCATCAGGATCCAATCATCCAGAAACCCATGAAGCCAAATCCAAAGTTGCAGAGTCAGAAATCCCAGAAGAATCAAGACAAAATGCAGCAGACTCCACCACATCTGAGCAAAGCCATGAAAGTACTTTCACTGAAGAAAACACTTCTTCTCAAAGCACTTCTGGTTCCAGTTCTAGTTCCAGCTTAGAATGTTCTTCACCAAAAGGGTTCTGCCACAACCCAACTCATAAATCTGAAGATCCAGGGATTGAAGATAGTAATAGGTATGTAAGTCCGATTAACCTGACCGGTTCTATCAGGTTTAGTGTCCGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.64

Weight (kDa)

6.03

Isoelectric Point (pI)

70.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37300 AT2G37300 AT2G37300 AT2G37300 AT2G37300 AT2G37300
fragaria_vesca	FvH4_6g14910 FvH4_6g14910 FvH4_6g14910
malus_domestica	MD04G1111000.v1.1 MD12G1129800.v1.1
prunus_persica	Prupe.6G245100_v2.0.a1
pyrus_communis	pycom04g10420 pycom12g12600
rosa_chinensis	RchiOBHm_Chr3g0468111
rosa_laevigata	RLG00000024448
rosa_multiflora	Rmu_sc0003659.1_g000013
rosa_roxburghii	Rroxscaffold_6G00413020
rosa_rugosa	Rorug03G0092800 Rorug03G0092900 Rorug03G0093000 Rorug03G0093100 Rorug03G0093200 Rorug03G0093200 Rorug03G0093200
rosa_samantha	Rh3AG141200 Rh3BG162700 Rh3CG162600 Rh3DG163200
rosa_wichuraiana	Rw3G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	309, 322, 539
AcuI	CTGAAG	3 cut(s)	221, 459, 561
AfaI	GTAC	3 cut(s)	289, 430, 619
AgeI	ACCGGT	1 cut(s)	593
AgsI	TTSAA	4 cut(s)	235, 248, 256, 557
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	6 cut(s)	8, 116, 181, 223, 244, 489
AluI	AGCT	6 cut(s)	8, 116, 181, 223, 244, 489
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	3 cut(s)	309, 322, 539
ApeKI	GCWGC	2 cut(s)	178, 392
AsiGI	ACCGGT	1 cut(s)	593
AsuHPI	GGTGA	1 cut(s)	495
BamHI	GGATCC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	190, 404
BccI	CCATC	3 cut(s)	20, 43, 53
BciT130I	CCWGG	1 cut(s)	549
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	120, 480
BfmI	CTRYAG	1 cut(s)	170
BisI	GCNGC	2 cut(s)	179, 393
BlsI	GCNGC	2 cut(s)	180, 394
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	549
BmiI	GGNNCC	2 cut(s)	316, 472
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	548
BsaWI	WCCGGW	1 cut(s)	593
Bse118I	RCCGGY	1 cut(s)	593
Bse1I	ACTGG	2 cut(s)	19, 474
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	548
BseGI	GGATG	2 cut(s)	142, 322
BseMII	CTCAG	2 cut(s)	100, 402
BseNI	ACTGG	2 cut(s)	19, 474
BseXI	GCAGC	2 cut(s)	190, 404
BshTI	ACCGGT	1 cut(s)	593
BsiSI	CCGG	1 cut(s)	594
BsmAI	GTCTC	1 cut(s)	88
Bsp1407I	TGTACA	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	192, 314, 544
BspCNI	CTCAG	2 cut(s)	99, 403
BspLI	GGNNCC	2 cut(s)	316, 472
BspPI	GGATC	3 cut(s)	309, 322, 539
BsrFI	RCCGGY	1 cut(s)	593
BsrGI	TGTACA	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	19, 474
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	3 cut(s)	192, 314, 544
Bst2UI	CCWGG	1 cut(s)	549
Bst6I	CTCTTC	1 cut(s)	183
BstAUI	TGTACA	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	102, 114
BstDEI	CTNAG	4 cut(s)	86, 411, 490, 621
BstF5I	GGATG	2 cut(s)	142, 322
BstKTI	GATC	3 cut(s)	195, 317, 547
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	192, 314, 544
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	547
BstSFI	CTRYAG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	190, 404
BstX2I	RGATCY	2 cut(s)	314, 544
BstYI	RGATCY	2 cut(s)	314, 544
BtsCI	GGATG	2 cut(s)	142, 322
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	2 cut(s)	102, 114
Cfr10I	RCCGGY	1 cut(s)	593
Csp6I	GTAC	3 cut(s)	288, 429, 618
CspAI	ACCGGT	1 cut(s)	593
CviAII	CATG	4 cut(s)	19, 33, 335, 422
CviJI	RGCY	8 cut(s)	8, 116, 181, 223, 244, 341, 420, 489
CviKI_1	RGCY	8 cut(s)	8, 116, 181, 223, 244, 341, 420, 489
CviQI	GTAC	3 cut(s)	288, 429, 618
DdeI	CTNAG	4 cut(s)	86, 411, 490, 621
DpnI	GATC	3 cut(s)	194, 316, 546
DpnII	GATC	3 cut(s)	192, 314, 544
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco57I	CTGAAG	3 cut(s)	221, 459, 561
EcoRII	CCWGG	1 cut(s)	547
FaeI	CATG	4 cut(s)	22, 36, 338, 425
FaiI	YATR	6 cut(s)	20, 34, 336, 423, 534, 573
FatI	CATG	4 cut(s)	18, 32, 334, 421
Fnu4HI	GCNGC	2 cut(s)	179, 393
FokI	GGATG	2 cut(s)	149, 309
Fsp4HI	GCNGC	2 cut(s)	179, 393
FspBI	CTAG	2 cut(s)	120, 480
GluI	GCNGC	2 cut(s)	179, 393
HapII	CCGG	1 cut(s)	594
Hin1II	CATG	4 cut(s)	22, 36, 338, 425
HindIII	AAGCTT	2 cut(s)	114, 242
HinfI	GANTC	4 cut(s)	248, 359, 377, 398
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	1 cut(s)	495
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	5 cut(s)	89, 364, 412, 541, 582
Hpy188III	TCNNGA	3 cut(s)	312, 326, 381
Hpy8I	GTNNAC	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	47, 196
HpyCH4V	TGCA	4 cut(s)	128, 140, 356, 392
HpyF3I	CTNAG	4 cut(s)	86, 411, 490, 621
Hsp92II	CATG	4 cut(s)	22, 36, 338, 425
Kzo9I	GATC	3 cut(s)	192, 314, 544
Lsp1109I	GCAGC	2 cut(s)	190, 404
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	120, 480
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	3 cut(s)	194, 316, 546
MboI	GATC	3 cut(s)	192, 314, 544
MflI	RGATCY	2 cut(s)	314, 544
MlyI	GAGTC	2 cut(s)	368, 392
MnlI	CCTC	6 cut(s)	63, 83, 95, 102, 127, 274
MseI	TTAA	1 cut(s)	585
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	549
NdeII	GATC	3 cut(s)	192, 314, 544
NlaIII	CATG	4 cut(s)	22, 36, 338, 425
NlaIV	GGNNCC	2 cut(s)	316, 472
NmuCI	GTSAC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	248, 377
PinAI	ACCGGT	1 cut(s)	593
PkrI	GCNGC	2 cut(s)	180, 394
PleI	GAGTC	2 cut(s)	367, 392
PpsI	GAGTC	2 cut(s)	367, 392
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	316, 472
PsuI	RGATCY	2 cut(s)	314, 544
RsaI	GTAC	3 cut(s)	289, 430, 619
RsaNI	GTAC	3 cut(s)	288, 429, 618
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	2 cut(s)	179, 393
Sau3AI	GATC	3 cut(s)	192, 314, 544
ScaI	AGTACT	1 cut(s)	430
SchI	GAGTC	2 cut(s)	368, 392
ScrFI	CCNGG	1 cut(s)	549
SetI	ASST	9 cut(s)	10, 118, 183, 225, 246, 491, 572, 591, 608
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	1 cut(s)	170
SspI	AATATT	2 cut(s)	230, 259
SspMI	CTAG	2 cut(s)	120, 480
StyD4I	CCNGG	1 cut(s)	547
TatI	WGTACW	2 cut(s)	287, 428
TfiI	GAWTC	2 cut(s)	248, 377
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	2 cut(s)	178, 392
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	3 cut(s)	297, 351, 438
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	1 cut(s)	442
XspI	CTAG	2 cut(s)	120, 480
ZrmI	AGTACT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.