Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005102

Physical Location & Seq

Genomic Coordinates Reverse (-)

24244378 .. 24253502

Gene Structure 9125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G245100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ATGCCGGACAGAGATACGGTGTCGTGGAATTCGATGATTGCCGGGTATTCACAGGCTGGTTATTACGCAGAGTGTAAAGAGTTGTTTCGGGAGATGTTAAGGTTAGGGAGGTTGAGGCCTAATGGGTTGACAGTGGTTAGTGTCTTGCAAGCATGTTTACAGTCCAATGATCTTATATTTGGTATGGAGGTTCATCAGTTTGTGAATGAGAGTCAAATTGAGATGGATATTATTCTTTGTAATGCTCTCATAGGGCTATATGCAAGATGTGGTAGCTTGGATTATGCTGAAGAATTATTTCATGGGATGAGTGAAAAGGATGAGGTCACTTATGGTCTAGTTCAGAACAACCGGCATGAAGCCGCCTTAGATTTAATTCGTGAAATGCAGGCATGTGGTTACAAACCAAATACCGTGACACTGTCAAGTATTCTTCCTGCAATATCCTATTTATCAAATCTGAAAGCAGGGAAGGAACTACATGCTTACTCTGTGGCGGCGTCGCCGGCGGTGGTGGTGGCGCTGCCATCGGTGGAGGTGAGAGGTGGGGGGAGTGAGTGTGTGATATGTAAAGAGGAGATGAGAGAAAACAGAGATGTGTGTGAATTGCCATGTCGGCACTTGTTTCATTGGATGTGTATTTTGCGGTGGCTGAAGAAGAGGAACACTTGTCCATGCTGTAGATTTAGGCTTCCCACCGATGATGTATTTGGGGAGATCCAACGGCTGTTGGAGGTTCTGATGAGTTCCGTAGCTAATAATGAGACTACGAGAGCCAAACAGATAAAGACAATGATTGCTACTAGCAAGGAAGATGGAAAATGGAGTGATCGGAAGATGGAAGGAGACGGTGGTTTGAGGACTTTAGAGTGCCTAAGAGGAAGGCTGCTTGCAGAGAGACAAGCTTCAAGGGTTGCAAAAGAGGATGCAGAACTCATGGGAAAGAAGTTGATGGAACTAAAGAACCAGCTCAATGAAGAGATCAAATTGAAGGACAGAGCTGAAAAGAAGCTCAAATTTTTGAAGAGAAAGCTTGAATCTTTGAAAATTTCATCCTCATCAGTAGAATCCCAACAGTCAAGTTCCTCCAAAAACAGTGAAATATCTTGCAGTCAGTCCACTACTACTTCATCAGCAGGCTCCAATGATCCAGAAGCCCATGAACCCAAATCCAACGTCACAGAGTCAGAAACCTCAGAAAATTTTGATCGAAGTGTAGCAGACACCACCACATCTGAGCAAAGCCATGAAAGTCTCTTCACTGAAGAAAACACAACTCCTCAAAGTATCAGTGCTTCCAGTTCCAGTTCAAGTACTAGCATAAGATGTCCTTCCCCAGAAGGGTTTTGCCACAACCCAACTCACAAATCTGAAGATTCAAAGAATGATGAAAATAGTTATTCAAACATAAAATCTTCAATGGCAGAGATTGAGAATTATGAGAATGGTCACTTGGATTATGTTGATAATACACTAGCATTAGTACCTGCCAGTATGCCTGCTACCTGTCACACCAGCACTGAATTGAAGCCAGTTAGTGAAAGTGTTAGACAGGTTCTTGATGATCTCAGGAATATCAGAGAAAATCTTCAAAGCTCAATGGAGAAAATAAATAAAATTAGAGCTGGCCAATTGATCAAACTCAAACATGCAAATAGTAATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

556

Amino Acids

61.96

Weight (kDa)

5.76

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37300 AT2G37300 AT2G37300 AT2G37300 AT2G37300 AT2G37300
fragaria_vesca	FvH4_6g14910 FvH4_6g14910 FvH4_6g14910
malus_domestica	MD04G1111000.v1.1 MD12G1129800.v1.1
prunus_persica	Prupe.6G245100_v2.0.a1
pyrus_communis	pycom04g10420 pycom12g12600
rosa_chinensis	RchiOBHm_Chr3g0468111
rosa_laevigata	RLG00000024448
rosa_multiflora	Rmu_sc0003659.1_g000013
rosa_roxburghii	Rroxscaffold_6G00413020
rosa_rugosa	Rorug03G0092800 Rorug03G0092900 Rorug03G0093000 Rorug03G0093100 Rorug03G0093200 Rorug03G0093200 Rorug03G0093200
rosa_samantha	Rh3AG141200 Rh3BG162700 Rh3CG162600 Rh3DG163200
rosa_wichuraiana	Rw3G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1495
AciI	CCGC	4 cut(s)	363, 497, 509, 646
AclWI	GGATC	2 cut(s)	712, 1142
AcoI	YGGCCR	1 cut(s)	1627
AcsI	RAATTY	4 cut(s)	28, 1016, 1047, 1201
AcuI	CTGAAG	4 cut(s)	309, 674, 1284, 1392
AcyI	GRCGYC	1 cut(s)	500
AfaI	GTAC	2 cut(s)	1315, 1485
AfiI	CCNNNNNNNGG	1 cut(s)	1341
AjuI	GAANNNNNNNTTGG	2 cut(s)	1436, 1468
AluBI	AGCT	9 cut(s)	276, 755, 905, 970, 1001, 1012, 1033, 1596, 1625
AluI	AGCT	9 cut(s)	276, 755, 905, 970, 1001, 1012, 1033, 1596, 1625
Alw26I	GTCTC	4 cut(s)	758, 840, 892, 1259
AlwI	GGATC	2 cut(s)	712, 1142
AoxI	GGCC	2 cut(s)	116, 1627
ApeKI	GCWGC	2 cut(s)	523, 886
ApoI	RAATTY	4 cut(s)	28, 1016, 1047, 1201
ArsI	GACNNNNNNTTYG	2 cut(s)	1161, 1193
Asp700I	GAANNNNTTC	2 cut(s)	297, 1587
AspLEI	GCGC	1 cut(s)	523
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	550
BalI	TGGCCA	1 cut(s)	1629
BarI	GAAGNNNNNNTAC	2 cut(s)	1279, 1311
BbvI	GCAGC	2 cut(s)	510, 873
BccI	CCATC	5 cut(s)	217, 535, 809, 832, 946
BceAI	ACGGC	1 cut(s)	740
BclI	TGATCA	1 cut(s)	1635
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	4 cut(s)	758, 840, 892, 1259
BfaI	CTAG	4 cut(s)	338, 804, 1317, 1475
BfmI	CTRYAG	1 cut(s)	679
BfoI	RGCGCY	1 cut(s)	524
BfuAI	ACCTGC	1 cut(s)	1495
BglI	GCCNNNNNGGC	1 cut(s)	616
BisI	GCNGC	4 cut(s)	363, 498, 524, 887
BlsI	GCNGC	4 cut(s)	364, 499, 525, 888
BmcAI	AGTACT	1 cut(s)	1315
Bme1390I	CCNGG	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	1141
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	916
BpuMI	CCSGG	1 cut(s)	43
BsaHI	GRCGYC	1 cut(s)	500
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	1 cut(s)	1341
Bse118I	RCCGGY	2 cut(s)	351, 505
Bse1I	ACTGG	4 cut(s)	1299, 1305, 1491, 1532
BseGI	GGATG	5 cut(s)	312, 325, 639, 931, 1052
BseLI	CCNNNNNNNGG	1 cut(s)	1341
BseMII	CTCAG	3 cut(s)	1209, 1227, 1582
BseNI	ACTGG	4 cut(s)	1299, 1305, 1491, 1532
BseRI	GAGGAG	2 cut(s)	590, 1269
BseXI	GCAGC	2 cut(s)	510, 873
BshFI	GGCC	2 cut(s)	118, 1629
BsiSI	CCGG	4 cut(s)	5, 42, 352, 506
BslI	CCNNNNNNNGG	1 cut(s)	1341
BsmAI	GTCTC	4 cut(s)	758, 840, 892, 1259
BsmBI	CGTCTC	1 cut(s)	840
BsnI	GGCC	2 cut(s)	118, 1629
Bsp143I	GATC	8 cut(s)	169, 717, 829, 981, 1147, 1207, 1564, 1635
BspACI	CCGC	4 cut(s)	363, 497, 509, 646
BspANI	GGCC	2 cut(s)	118, 1629
BspCNI	CTCAG	3 cut(s)	1208, 1228, 1581
BspLI	GGNNCC	1 cut(s)	1141
BspMI	ACCTGC	1 cut(s)	1495
BspPI	GGATC	2 cut(s)	712, 1142
BsrFI	RCCGGY	2 cut(s)	351, 505
BsrI	ACTGG	4 cut(s)	1299, 1305, 1491, 1532
BssAI	RCCGGY	2 cut(s)	351, 505
BssMI	GATC	8 cut(s)	169, 717, 829, 981, 1147, 1207, 1564, 1635
BssNI	GRCGYC	1 cut(s)	500
Bst4CI	ACNGT	8 cut(s)	19, 133, 162, 415, 423, 851, 1077, 1097
Bst6I	CTCTTC	4 cut(s)	653, 972, 1019, 1262
BstACI	GRCGYC	1 cut(s)	500
BstC8I	GCNNGC	7 cut(s)	150, 390, 507, 891, 1138, 1500, 1627
BstDEI	CTNAG	5 cut(s)	367, 875, 1195, 1236, 1568
BstF5I	GGATG	5 cut(s)	312, 325, 639, 931, 1052
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	8 cut(s)	172, 720, 832, 984, 1150, 1210, 1567, 1638
BstMAI	GTCTC	4 cut(s)	758, 840, 892, 1259
BstMBI	GATC	8 cut(s)	169, 717, 829, 981, 1147, 1207, 1564, 1635
BstMWI	GCNNNNNNNGC	2 cut(s)	506, 616
BstNSI	RCATGY	4 cut(s)	156, 396, 485, 1652
BstSCI	CCNGG	1 cut(s)	41
BstSFI	CTRYAG	1 cut(s)	679
BstV1I	GCAGC	2 cut(s)	510, 873
BstX2I	RGATCY	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	118, 1629
BtsCI	GGATG	5 cut(s)	312, 325, 639, 931, 1052
BtsIMutI	CAGTG	6 cut(s)	138, 419, 1102, 1260, 1297, 1518
BveI	ACCTGC	1 cut(s)	1495
Cac8I	GCNNGC	7 cut(s)	150, 390, 507, 891, 1138, 1500, 1627
CfoI	GCGC	1 cut(s)	523
Cfr10I	RCCGGY	2 cut(s)	351, 505
CseI	GACGC	1 cut(s)	489
Csp6I	GTAC	2 cut(s)	1314, 1484
CviQI	GTAC	2 cut(s)	1314, 1484
DdeI	CTNAG	5 cut(s)	367, 875, 1195, 1236, 1568
DpnI	GATC	8 cut(s)	171, 719, 831, 983, 1149, 1209, 1566, 1637
DpnII	GATC	8 cut(s)	169, 717, 829, 981, 1147, 1207, 1564, 1635
EaeI	YGGCCR	1 cut(s)	1627
Eam1104I	CTCTTC	4 cut(s)	653, 972, 1019, 1262
EarI	CTCTTC	4 cut(s)	653, 972, 1019, 1262
Eco147I	AGGCCT	1 cut(s)	118
Eco57I	CTGAAG	4 cut(s)	309, 674, 1284, 1392
EcoRI	GAATTC	1 cut(s)	28
Esp3I	CGTCTC	1 cut(s)	840
FalI	AAGNNNNNCTT	2 cut(s)	1315, 1347
FbaI	TGATCA	1 cut(s)	1635
Fnu4HI	GCNGC	4 cut(s)	363, 498, 524, 887
FokI	GGATG	5 cut(s)	319, 332, 646, 938, 1039
Fsp4HI	GCNGC	4 cut(s)	363, 498, 524, 887
FspBI	CTAG	4 cut(s)	338, 804, 1317, 1475
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	4 cut(s)	363, 498, 524, 887
HaeII	RGCGCY	1 cut(s)	524
HaeIII	GGCC	2 cut(s)	118, 1629
HapII	CCGG	4 cut(s)	5, 42, 352, 506
HgaI	GACGC	1 cut(s)	489
HhaI	GCGC	1 cut(s)	523
Hin1I	GRCGYC	1 cut(s)	500
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HindIII	AAGCTT	2 cut(s)	903, 1031
HinfI	GANTC	5 cut(s)	211, 1037, 1067, 1184, 1376
HpaII	CCGG	4 cut(s)	5, 42, 352, 506
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	3 cut(s)	129, 158, 1119
Hpy188I	TCNGA	9 cut(s)	345, 462, 741, 834, 1189, 1198, 1237, 1372, 1580
Hpy188III	TCNNGA	5 cut(s)	89, 380, 1151, 1559, 1570
Hpy8I	GTNNAC	3 cut(s)	129, 158, 1119
Hpy99I	CGWCG	1 cut(s)	505
HpyAV	CCTTC	6 cut(s)	466, 836, 876, 985, 1334, 1341
HpyCH4III	ACNGT	8 cut(s)	19, 133, 162, 415, 423, 851, 1077, 1097
HpyCH4IV	ACGT	1 cut(s)	1176
HpyCH4V	TGCA	9 cut(s)	148, 263, 388, 440, 893, 917, 929, 1110, 1652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	506, 616
HpyF3I	CTNAG	5 cut(s)	367, 875, 1195, 1236, 1568
HpySE526I	ACGT	1 cut(s)	1176
Hsp92I	GRCGYC	1 cut(s)	500
HspAI	GCGC	1 cut(s)	521
KroI	GCCGGC	1 cut(s)	505
KroNI	GCCGGC	1 cut(s)	507
Ksp22I	TGATCA	1 cut(s)	1635
Kzo9I	GATC	8 cut(s)	169, 717, 829, 981, 1147, 1207, 1564, 1635
LmnI	GCTCC	1 cut(s)	1145
Lsp1109I	GCAGC	2 cut(s)	510, 873
LweI	GCATC	1 cut(s)	916
MaeI	CTAG	4 cut(s)	338, 804, 1317, 1475
MaeII	ACGT	1 cut(s)	1176
MaeIII	GTNAC	6 cut(s)	325, 398, 415, 1177, 1448, 1508
MalI	GATC	8 cut(s)	171, 719, 831, 983, 1149, 1209, 1566, 1637
MboI	GATC	8 cut(s)	169, 717, 829, 981, 1147, 1207, 1564, 1635
MfeI	CAATTG	1 cut(s)	1631
MflI	RGATCY	1 cut(s)	717
MlsI	TGGCCA	1 cut(s)	1629
MluNI	TGGCCA	1 cut(s)	1629
MlyI	GAGTC	2 cut(s)	220, 1193
MmeI	TCCRAC	3 cut(s)	711, 745, 1197
Mox20I	TGGCCA	1 cut(s)	1629
MreI	CGCCGGCG	1 cut(s)	505
MroNI	GCCGGC	1 cut(s)	505
MroXI	GAANNNNTTC	2 cut(s)	297, 1587
MscI	TGGCCA	1 cut(s)	1629
MseI	TTAA	3 cut(s)	98, 374, 1666
Msp20I	TGGCCA	1 cut(s)	1629
MspI	CCGG	4 cut(s)	5, 42, 352, 506
MspR9I	CCNGG	1 cut(s)	43
MunI	CAATTG	1 cut(s)	1631
MwoI	GCNNNNNNNGC	2 cut(s)	506, 616
NaeI	GCCGGC	1 cut(s)	507
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	8 cut(s)	169, 717, 829, 981, 1147, 1207, 1564, 1635
NgoMIV	GCCGGC	1 cut(s)	505
NlaIV	GGNNCC	1 cut(s)	1141
NmuCI	GTSAC	5 cut(s)	325, 415, 1177, 1448, 1508
NspI	RCATGY	4 cut(s)	156, 396, 485, 1652
PceI	AGGCCT	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PdiI	GCCGGC	1 cut(s)	507
PdmI	GAANNNNTTC	2 cut(s)	297, 1587
PfeI	GAWTC	3 cut(s)	1037, 1067, 1376
PflFI	GACNNNGTC	1 cut(s)	421
PkrI	GCNGC	4 cut(s)	364, 499, 525, 888
PleI	GAGTC	2 cut(s)	219, 1192
PpsI	GAGTC	2 cut(s)	219, 1192
PspN4I	GGNNCC	1 cut(s)	1141
PsuI	RGATCY	1 cut(s)	717
PsyI	GACNNNGTC	1 cut(s)	421
RsaI	GTAC	2 cut(s)	1315, 1485
RsaNI	GTAC	2 cut(s)	1314, 1484
SaqAI	TTAA	3 cut(s)	98, 374, 1666
SatI	GCNGC	4 cut(s)	363, 498, 524, 887
Sau3AI	GATC	8 cut(s)	169, 717, 829, 981, 1147, 1207, 1564, 1635
ScaI	AGTACT	1 cut(s)	1315
SchI	GAGTC	2 cut(s)	220, 1193
ScrFI	CCNGG	1 cut(s)	43
SfaNI	GCATC	1 cut(s)	916
SfcI	CTRYAG	1 cut(s)	679
SgrAI	CRCCGGYG	1 cut(s)	505
SseBI	AGGCCT	1 cut(s)	118
SsiI	CCGC	4 cut(s)	363, 497, 509, 646
SspMI	CTAG	4 cut(s)	338, 804, 1317, 1475
StuI	AGGCCT	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	8 cut(s)	19, 133, 162, 415, 423, 851, 1077, 1097
TaiI	ACGT	1 cut(s)	1179
TaqI	TCGA	2 cut(s)	32, 1210
TatI	WGTACW	1 cut(s)	1313
TauI	GCSGC	2 cut(s)	365, 500
TfiI	GAWTC	3 cut(s)	1037, 1067, 1376
Tru1I	TTAA	3 cut(s)	98, 374, 1666
Tru9I	TTAA	3 cut(s)	98, 374, 1666
TscAI	CASTG	6 cut(s)	138, 426, 1102, 1267, 1297, 1525
TseFI	GTSAC	5 cut(s)	325, 415, 1177, 1448, 1508
TseI	GCWGC	2 cut(s)	523, 886
Tsp45I	GTSAC	5 cut(s)	325, 415, 1177, 1448, 1508
TspGWI	ACGGA	1 cut(s)	739
TspRI	CASTG	6 cut(s)	138, 426, 1102, 1267, 1297, 1525
Tth111I	GACNNNGTC	1 cut(s)	421
XapI	RAATTY	4 cut(s)	28, 1016, 1047, 1201
XceI	RCATGY	4 cut(s)	156, 396, 485, 1652
XmnI	GAANNNNTTC	2 cut(s)	297, 1587
XspI	CTAG	4 cut(s)	338, 804, 1317, 1475
ZrmI	AGTACT	1 cut(s)	1315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.