MD04G1111100.v1.1

phosphatase 2C

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
19587324 .. 19590054
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1111100.v1.1.491

Sequence Viewer

Length: 1116 bp
ATGGTTGGGTCATGTTGGAGGCCTTCTGCAGTGGATGATGGATCTAGCCGTGGTGGGGAAGCCAGCGGCCGGGTTGATGGGTTGTTATGGTACAAGGACTTTGGGCAGCATGCTTGGGGAGAATTCTCAATGGCTGCCATTCAGGCCAATTCTGTCATCGAGGATCAAAGCCAGGTCGAATCAGGTCCTCTGTGTACAACGAAAGCCGGTCCTCTGGGGACTTTTGTTGGAGTTTATGATGGACATGGAGGGCCTGAGGCTTCAAGATACGTCAATGAAAATCTCTTCTGCAATCTAAAGAGAATTGCAGCTGAGCATCGATGCATGTCAGAAAACGTGATCAAGAAGGCGTACTTGGCGACGGAAGAAAGTTTTCTCTCCGTGGTGAAGAAGCAGTGGCAAAGCAAGCCACAAATTGCATCTGCAGGAACATGTTGTTTGGTGGGGATAATATGCGATGGACTGCTTTACACAGCAAATGTTGGGGACTCTAGGGTGGTTCTAGGAAAATTAGAAAGGGCAACTAAAGAAGTCATGGCTATTCAGTTATCTGCAGAGCACAATGCAAGCGTAGAATCCGTGAGAGAGGAACTCAAGTCGTTGCATCCACACGATTCAAAGATTGTGGTTTTAAGGCACCGAGTTTGGCGCGTTAAAGGCCTCATTCAGGTTTCGAGATCAATTGGTGACGCGTACTTGAAGAATGCAGAGTTCAACAGAGAGCCTCTACCCCTAAAATATAGGTTACCTGAACCTTTTCCCAACCCAATTCTAATCCCGGAACCAGAAGTATCAGTAATTAAACTCCGACCGGAAGATCAGTTTCTCATATTCGCTTCCGATGGTCTGTGGGAGCATCTTAGCAACCAGGAGGCTGTCGACATTGTCAACGATTACCCCCGCAAGGGAATAGCAAGGAAGCTGATTGAAGCTGCACTACAAGAAGCAGCTAAGAAAAGGGAAGTGAGGTACGCAGATTTGAGGAAAATCGAGCGCGGAGTAAGGCGACATTTTCACGACGACATCACGGTGGTGGTGGTGTTTCTGAATCAAAGCCTGTTGAAAAATGGAAGCTCCCCACGCAACTCTCATTTTTCATTAAAACCCGACTTTTAG

Protein Analysis

372

Amino Acids

41.37

Weight (kDa)

8.09

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 73 - 318 2.8e-38 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016879)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14920
malus_domestica MD04G1111100.v1.1 MD12G1129700.v1.1
prunus_persica Prupe.6G245000_v2.0.a1
pyrus_communis pycom04g10370 pycom12g12590
rosa_chinensis RchiOBHm_Chr3g0468121
rosa_laevigata RLG00000024447
rosa_multiflora Rmu_sc0003659.1_g000011
rosa_roxburghii Rroxscaffold_6G00413010
rosa_rugosa Rorug03G0093200
rosa_samantha Rh3CG162700 Rh3DG163300
rosa_wichuraiana Rw3G013350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 636
AccI GTMKAC 1 cut(s) 879
AccII CGCG 3 cut(s) 651, 692, 996
AciI CCGC 3 cut(s) 66, 901, 996
AclWI GGATC 2 cut(s) 49, 171
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 5 cut(s) 92, 196, 353, 695, 971
AfiI CCNNNNNNNGG 5 cut(s) 55, 69, 667, 904, 905
AflIII ACRYGT 2 cut(s) 431, 690
AgsI TTSAA 6 cut(s) 264, 618, 700, 715, 929, 1063
AjnI CCWGG 2 cut(s) 171, 867
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AleI CACNNNNGTG 1 cut(s) 1031
AluBI AGCT 5 cut(s) 311, 922, 932, 950, 1074
AluI AGCT 5 cut(s) 311, 922, 932, 950, 1074
Alw21I GWGCWC 1 cut(s) 561
AlwI GGATC 2 cut(s) 49, 171
AoxI GGCC 5 cut(s) 20, 67, 144, 251, 658
ApeKI GCWGC 5 cut(s) 106, 134, 308, 932, 947
ApoI RAATTY 1 cut(s) 122
Asp700I GAANNNNTTC 2 cut(s) 372, 756
AspLEI GCGC 2 cut(s) 651, 996
AspS9I GGNCC 3 cut(s) 185, 209, 251
AsuC2I CCSGG 2 cut(s) 71, 779
AsuHPI GGTGA 2 cut(s) 397, 698
AvaII GGWCC 2 cut(s) 185, 209
AxyI CCTNAGG 1 cut(s) 255
BanI GGYRCC 1 cut(s) 636
BarI GAAGNNNNNNTAC 2 cut(s) 921, 953
Bbv12I GWGCWC 1 cut(s) 561
BbvI GCAGC 5 cut(s) 118, 121, 320, 919, 959
BccI CCATC 5 cut(s) 32, 71, 233, 452, 836
BceAI ACGGC 1 cut(s) 33
BciT130I CCWGG 2 cut(s) 173, 869
BclI TGATCA 1 cut(s) 339
BcnI CCSGG 2 cut(s) 71, 779
BfaI CTAG 3 cut(s) 45, 492, 503
BfmI CTRYAG 3 cut(s) 27, 423, 552
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 6 cut(s) 67, 107, 135, 309, 933, 948
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 6 cut(s) 68, 108, 136, 310, 934, 949
Bme1390I CCNGG 4 cut(s) 71, 173, 779, 869
Bme18I GGWCC 2 cut(s) 185, 209
BmgT120I GGNCC 3 cut(s) 185, 209, 251
BmiI GGNNCC 2 cut(s) 638, 783
BmrFI CCNGG 4 cut(s) 71, 173, 779, 869
BmsI GCATC 5 cut(s) 311, 325, 428, 613, 865
BplI GAGNNNNNCTC 2 cut(s) 576, 608
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 578
BpuMI CCSGG 2 cut(s) 71, 779
Bsa29I ATCGAT 1 cut(s) 319
BsaJI CCNNGG 2 cut(s) 49, 381
BsaWI WCCGGW 1 cut(s) 811
Bsc4I CCNNNNNNNGG 5 cut(s) 55, 69, 667, 904, 905
Bse118I RCCGGY 1 cut(s) 206
Bse21I CCTNAGG 1 cut(s) 255
BseBI CCWGG 2 cut(s) 173, 869
BseCI ATCGAT 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 49, 381
BseGI GGATG 2 cut(s) 40, 604
BseLI CCNNNNNNNGG 5 cut(s) 55, 69, 667, 904, 905
BseMII CTCAG 2 cut(s) 246, 303
BseX3I CGGCCG 1 cut(s) 67
BseXI GCAGC 5 cut(s) 118, 121, 320, 919, 959
BsgI GTGCAG 1 cut(s) 918
Bsh1236I CGCG 3 cut(s) 651, 692, 996
Bsh1285I CGRYCG 2 cut(s) 70, 812
BshFI GGCC 5 cut(s) 22, 69, 146, 253, 660
BshNI GGYRCC 1 cut(s) 636
BshVI ATCGAT 1 cut(s) 319
BsiEI CGRYCG 2 cut(s) 70, 812
BsiHKAI GWGCWC 1 cut(s) 561
BsiSI CCGG 4 cut(s) 70, 207, 779, 812
BslFI GGGAC 2 cut(s) 232, 500
BslI CCNNNNNNNGG 5 cut(s) 55, 69, 667, 904, 905
BsmFI GGGAC 2 cut(s) 232, 500
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 5 cut(s) 22, 69, 146, 253, 660
Bsp1286I GDGCHC 1 cut(s) 561
Bsp1407I TGTACA 1 cut(s) 194
Bsp143I GATC 5 cut(s) 41, 163, 339, 677, 817
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 3 cut(s) 66, 901, 996
BspANI GGCC 5 cut(s) 22, 69, 146, 253, 660
BspCNI CTCAG 2 cut(s) 247, 304
BspDI ATCGAT 1 cut(s) 319
BspFNI CGCG 3 cut(s) 651, 692, 996
BspLI GGNNCC 2 cut(s) 638, 783
BspMAI CTGCAG 3 cut(s) 31, 427, 556
BspPI GGATC 2 cut(s) 49, 171
BspT107I GGYRCC 1 cut(s) 636
BsrFI RCCGGY 1 cut(s) 206
BsrGI TGTACA 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 49, 381
BssMI GATC 5 cut(s) 41, 163, 339, 677, 817
Bst2UI CCWGG 2 cut(s) 173, 869
Bst4CI ACNGT 1 cut(s) 1030
Bst6I CTCTTC 1 cut(s) 290
BstAUI TGTACA 1 cut(s) 194
BstC8I GCNNGC 4 cut(s) 64, 111, 407, 568
BstDEI CTNAG 4 cut(s) 255, 312, 860, 951
BstDSI CCRYGG 2 cut(s) 49, 381
BstEII GGTNACC 1 cut(s) 744
BstENI CCTNNNNNAGG 1 cut(s) 665
BstF5I GGATG 2 cut(s) 40, 604
BstFNI CGCG 3 cut(s) 651, 692, 996
BstHHI GCGC 2 cut(s) 651, 996
BstKTI GATC 5 cut(s) 44, 166, 342, 680, 820
BstMBI GATC 5 cut(s) 41, 163, 339, 677, 817
BstMCI CGRYCG 2 cut(s) 70, 812
BstMWI GCNNNNNNNGC 5 cut(s) 143, 356, 406, 657, 1080
BstNI CCWGG 2 cut(s) 173, 869
BstNSI RCATGY 3 cut(s) 113, 328, 435
BstPI GGTNACC 1 cut(s) 744
BstSCI CCNGG 4 cut(s) 69, 171, 777, 867
BstSFI CTRYAG 3 cut(s) 27, 423, 552
BstUI CGCG 3 cut(s) 651, 692, 996
BstV1I GCAGC 5 cut(s) 118, 121, 320, 919, 959
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
BstZI CGGCCG 1 cut(s) 67
Bsu15I ATCGAT 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 5 cut(s) 22, 69, 146, 253, 660
BsuTUI ATCGAT 1 cut(s) 319
BtgI CCRYGG 2 cut(s) 49, 381
BtgZI GCGATG 1 cut(s) 471
BtsCI GGATG 2 cut(s) 40, 604
BtsI GCAGTG 2 cut(s) 36, 401
BtsIMutI CAGTG 2 cut(s) 36, 401
Cac8I GCNNGC 4 cut(s) 64, 111, 407, 568
CfoI GCGC 2 cut(s) 651, 996
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 3 cut(s) 185, 209, 251
ClaI ATCGAT 1 cut(s) 319
CseI GACGC 1 cut(s) 698
Csp6I GTAC 5 cut(s) 91, 195, 352, 694, 970
CspCI CAANNNNNGTGG 2 cut(s) 606, 641
CviAII CATG 6 cut(s) 12, 110, 245, 325, 432, 535
CviQI GTAC 5 cut(s) 91, 195, 352, 694, 970
DdeI CTNAG 4 cut(s) 255, 312, 860, 951
DpnI GATC 5 cut(s) 43, 165, 341, 679, 819
DpnII GATC 5 cut(s) 41, 163, 339, 677, 817
EaeI YGGCCR 1 cut(s) 67
EagI CGGCCG 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
EclXI CGGCCG 1 cut(s) 67
Eco147I AGGCCT 2 cut(s) 22, 660
Eco47I GGWCC 2 cut(s) 185, 209
Eco52I CGGCCG 1 cut(s) 67
Eco81I CCTNAGG 1 cut(s) 255
Eco91I GGTNACC 1 cut(s) 744
EcoNI CCTNNNNNAGG 1 cut(s) 665
EcoO109I RGGNCCY 2 cut(s) 185, 251
EcoO65I GGTNACC 1 cut(s) 744
EcoRI GAATTC 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 171, 867
EcoT22I ATGCAT 1 cut(s) 326
FaeI CATG 6 cut(s) 15, 113, 248, 328, 435, 538
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 2 cut(s) 232, 500
FatI CATG 6 cut(s) 11, 109, 244, 324, 431, 534
FauI CCCGC 1 cut(s) 908
FbaI TGATCA 1 cut(s) 339
FblI GTMKAC 1 cut(s) 879
Fnu4HI GCNGC 6 cut(s) 67, 107, 135, 309, 933, 948
FokI GGATG 2 cut(s) 47, 591
Fsp4HI GCNGC 6 cut(s) 67, 107, 135, 309, 933, 948
FspBI CTAG 3 cut(s) 45, 492, 503
GlaI GCGC 2 cut(s) 650, 995
GluI GCNGC 6 cut(s) 67, 107, 135, 309, 933, 948
HaeIII GGCC 5 cut(s) 22, 69, 146, 253, 660
HapII CCGG 4 cut(s) 70, 207, 779, 812
HgaI GACGC 1 cut(s) 698
HhaI GCGC 2 cut(s) 651, 996
Hin1II CATG 6 cut(s) 15, 113, 248, 328, 435, 538
Hin6I GCGC 2 cut(s) 649, 994
HinP1I GCGC 2 cut(s) 649, 994
HincII GTYRAC 2 cut(s) 880, 889
HindII GTYRAC 2 cut(s) 880, 889
HinfI GANTC 5 cut(s) 179, 488, 575, 614, 1048
HpaII CCGG 4 cut(s) 70, 207, 779, 812
HphI GGTGA 2 cut(s) 397, 698
Hpy166II GTNNAC 3 cut(s) 195, 880, 889
Hpy188I TCNGA 4 cut(s) 331, 809, 841, 1047
Hpy188III TCNNGA 4 cut(s) 264, 343, 675, 1016
Hpy8I GTNNAC 3 cut(s) 195, 880, 889
Hpy99I CGWCG 2 cut(s) 364, 1022
HpyAV CCTTC 2 cut(s) 33, 340
HpyCH4III ACNGT 1 cut(s) 1030
HpyCH4IV ACGT 2 cut(s) 270, 336
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 356, 406, 657, 1080
HpyF3I CTNAG 4 cut(s) 255, 312, 860, 951
HpySE526I ACGT 2 cut(s) 270, 336
Hsp92II CATG 6 cut(s) 15, 113, 248, 328, 435, 538
HspAI GCGC 2 cut(s) 649, 994
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 5 cut(s) 41, 163, 339, 677, 817
LmnI GCTCC 2 cut(s) 853, 1079
Lsp1109I GCAGC 5 cut(s) 118, 121, 320, 919, 959
LweI GCATC 5 cut(s) 311, 325, 428, 613, 865
MaeI CTAG 3 cut(s) 45, 492, 503
MaeII ACGT 2 cut(s) 270, 336
MaeIII GTNAC 2 cut(s) 686, 744
MalI GATC 5 cut(s) 43, 165, 341, 679, 819
MboI GATC 5 cut(s) 41, 163, 339, 677, 817
MboII GAAGA 5 cut(s) 277, 377, 400, 712, 827
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 561
MluCI AATT 8 cut(s) 122, 148, 303, 414, 509, 681, 768, 798
MluI ACGCGT 1 cut(s) 690
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 2 cut(s) 208, 832
Mph1103I ATGCAT 1 cut(s) 326
MroXI GAANNNNTTC 2 cut(s) 372, 756
MseI TTAA 4 cut(s) 632, 654, 801, 1100
MslI CAYNNNNRTG 2 cut(s) 1028, 1031
MspA1I CMGCKG 2 cut(s) 66, 311
MspI CCGG 4 cut(s) 70, 207, 779, 812
MspR9I CCNGG 4 cut(s) 71, 173, 779, 869
MunI CAATTG 1 cut(s) 681
Mva1269I GAATGC 1 cut(s) 709
MvaI CCWGG 2 cut(s) 173, 869
MvnI CGCG 3 cut(s) 651, 692, 996
MwoI GCNNNNNNNGC 5 cut(s) 143, 356, 406, 657, 1080
NciI CCSGG 2 cut(s) 71, 779
NdeII GATC 5 cut(s) 41, 163, 339, 677, 817
NlaIII CATG 6 cut(s) 15, 113, 248, 328, 435, 538
NlaIV GGNNCC 2 cut(s) 638, 783
NmuCI GTSAC 1 cut(s) 686
NsiI ATGCAT 1 cut(s) 326
NspI RCATGY 3 cut(s) 113, 328, 435
OliI CACNNNNGTG 1 cut(s) 1031
PaeI GCATGC 1 cut(s) 113
PceI AGGCCT 2 cut(s) 22, 660
PciI ACATGT 1 cut(s) 431
PctI GAATGC 1 cut(s) 709
PdmI GAANNNNTTC 2 cut(s) 372, 756
PfeI GAWTC 4 cut(s) 179, 575, 614, 1048
PflFI GACNNNGTC 1 cut(s) 884
PfoI TCCNGGA 1 cut(s) 777
PkrI GCNGC 6 cut(s) 68, 108, 136, 310, 934, 949
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
PpuMI RGGWCCY 1 cut(s) 185
PscI ACATGT 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 185
Psp6I CCWGG 2 cut(s) 171, 867
PspEI GGTNACC 1 cut(s) 744
PspGI CCWGG 2 cut(s) 171, 867
PspN4I GGNNCC 2 cut(s) 638, 783
PspPI GGNCC 3 cut(s) 185, 209, 251
PspPPI RGGWCCY 1 cut(s) 185
PstI CTGCAG 3 cut(s) 31, 427, 556
PsuI RGATCY 1 cut(s) 41
PsyI GACNNNGTC 1 cut(s) 884
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 5 cut(s) 92, 196, 353, 695, 971
RsaNI GTAC 5 cut(s) 91, 195, 352, 694, 970
RseI CAYNNNNRTG 2 cut(s) 1028, 1031
SalI GTCGAC 1 cut(s) 878
SaqAI TTAA 4 cut(s) 632, 654, 801, 1100
SatI GCNGC 6 cut(s) 67, 107, 135, 309, 933, 948
Sau3AI GATC 5 cut(s) 41, 163, 339, 677, 817
Sau96I GGNCC 3 cut(s) 185, 209, 251
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 4 cut(s) 71, 173, 779, 869
SduI GDGCHC 1 cut(s) 561
SfaNI GCATC 5 cut(s) 311, 325, 428, 613, 865
SfcI CTRYAG 3 cut(s) 27, 423, 552
SinI GGWCC 2 cut(s) 185, 209
SmiMI CAYNNNNRTG 2 cut(s) 1028, 1031
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
SphI GCATGC 1 cut(s) 113
Sse9I AATT 8 cut(s) 122, 148, 303, 414, 509, 681, 768, 798
SseBI AGGCCT 2 cut(s) 22, 660
SsiI CCGC 3 cut(s) 66, 901, 996
SspMI CTAG 3 cut(s) 45, 492, 503
StuI AGGCCT 2 cut(s) 22, 660
StyD4I CCNGG 4 cut(s) 69, 171, 777, 867
TaaI ACNGT 1 cut(s) 1030
TaiI ACGT 2 cut(s) 273, 339
TaqI TCGA 6 cut(s) 159, 177, 319, 674, 879, 990
TasI AATT 8 cut(s) 122, 148, 303, 414, 509, 681, 768, 798
TatI WGTACW 1 cut(s) 194
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 4 cut(s) 179, 575, 614, 1048
Tru1I TTAA 4 cut(s) 632, 654, 801, 1100
Tru9I TTAA 4 cut(s) 632, 654, 801, 1100
TscAI CASTG 2 cut(s) 36, 401
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 5 cut(s) 106, 134, 308, 932, 947
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 2 cut(s) 291, 1086
TspGWI ACGGA 3 cut(s) 370, 377, 568
TspRI CASTG 2 cut(s) 36, 401
Tth111I GACNNNGTC 1 cut(s) 884
VpaK11BI GGWCC 2 cut(s) 185, 209
XagI CCTNNNNNAGG 1 cut(s) 665
XapI RAATTY 1 cut(s) 122
XceI RCATGY 3 cut(s) 113, 328, 435
XmiI GTMKAC 1 cut(s) 879
XmnI GAANNNNTTC 2 cut(s) 372, 756
XspI CTAG 3 cut(s) 45, 492, 503
Zsp2I ATGCAT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.