RLG00000024447

phosphatase 2C

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
35936623 .. 35938435
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024447

Sequence Viewer

Length: 1119 bp
ATGGTTAAACCCTGTTGGAGGCCATCTGTAGAGGAAGATGGTGCTCGACCGGGTGGTGAAGCTAGCGGACGTGTTGAAGGGTTGTTGTGGTACAAGGACCTGGGCTACCATGCTTGGGGGCAATTTTCAATGGCTGTGATCCAAGCCAATAGTACTTTGGAGGATCAAAGCCAGCTCGAATCCGGGTTTCTGAGTGCAAACAGATTCGGTCCTCAGGGGACCTTCGTTGGAGTTTACGATGGACATGGAGGCCCCGAGGCTTCAAGATATGTAAACGACAATCTTTTCAGGAATCTCCAGAGAATTGCATCAGAGCATCGAAGCATGTCGGAAAATGTTATTCGAAAGGCGTTTTTGGCCACGGAAGAAAACTTCCTCTCTGTTGTGAGGAAGCAATGGCTAAGTAAGCCACAGATTGCTTCCGCAGGAACATGTTGTTTGGTGGGAGTAGTGTGTAATGGACTTTTATACACGGCAAATGTTGGGGACTCAAGGCTGGTTCTAGGGAAAGTAGAAAGGGCCACTAGGGAAGTCATAGCTGTTCAGTTGTCTTCAGAGCACAATGCAAGTATAGAATCAGTGAGACAAGAACTTAAGACTACTCATCCCCATGATCCCCAGATTGTGGTATTGAGACACAAAGTTTGGCGCGTCAAAGGCCTCATACAGGTTTCAAGATCCATTGGTGATGCATATCTAAAGAATGCAGAGTTCAACAGAGAACCTCTACTACCCAAGTTTAGGTTACCAGATTCTGAACCTTTCCTCAAGCCAATTCTAAGTCCAGATCCATCAATATCGGTACTCAAACTCCGACCAGAAGATCAGTTTCTCATTTTTGCTACTGATGGTCTGTGGGAGCATCTTAGCAACCAGGAGGCTGTCGACATTGTCAACAATAACCCACGTAAAGGAATTGCGAGGAAGCTTATTGAAGCTGCACTACAAGCAGCAGCAAAGAAAAGGGAAGTGAGGTACTCAGACTTGAAAAGAATCGAGCGAGGAGTGAGACGACATTTTCACGACGACATCAGTGTAGTGGTAGTGTTTCTAGATCACAGTCAGTTGAAAAATGGAACCTCTCGCAAATCTAATATTTCAATAACACCCAACTTCTAG

Protein Analysis

373

Amino Acids

41.71

Weight (kDa)

9.18

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 71 - 320 4.9e-38 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016879)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14920
malus_domestica MD04G1111100.v1.1 MD12G1129700.v1.1
prunus_persica Prupe.6G245000_v2.0.a1
pyrus_communis pycom04g10370 pycom12g12590
rosa_chinensis RchiOBHm_Chr3g0468121
rosa_laevigata RLG00000024447
rosa_multiflora Rmu_sc0003659.1_g000011
rosa_roxburghii Rroxscaffold_6G00413010
rosa_rugosa Rorug03G0093200
rosa_samantha Rh3CG162700 Rh3DG163300
rosa_wichuraiana Rw3G013350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 625
AccI GTMKAC 1 cut(s) 885
AccII CGCG 1 cut(s) 651
AciI CCGC 2 cut(s) 66, 423
AclWI GGATC 5 cut(s) 133, 171, 608, 672, 782
AcoI YGGCCR 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 4 cut(s) 92, 154, 804, 977
AfiI CCNNNNNNNGG 6 cut(s) 18, 115, 625, 667, 741, 911
AflII CTTAAG 1 cut(s) 593
AflIII ACRYGT 2 cut(s) 70, 431
AgsI TTSAA 9 cut(s) 77, 129, 264, 675, 715, 935, 988, 1069, 1101
AjiI CACGTC 1 cut(s) 71
AjnI CCWGG 2 cut(s) 99, 873
AluBI AGCT 5 cut(s) 62, 175, 539, 928, 938
AluI AGCT 5 cut(s) 62, 175, 539, 928, 938
Alw21I GWGCWC 2 cut(s) 46, 561
Alw26I GTCTC 3 cut(s) 577, 628, 1003
AlwI GGATC 5 cut(s) 133, 171, 608, 672, 782
AlwNI CAGNNNCTG 1 cut(s) 755
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 5 cut(s) 20, 250, 357, 519, 658
ApeKI GCWGC 3 cut(s) 938, 950, 953
ArsI GACNNNNNNTTYG 2 cut(s) 627, 659
AspLEI GCGC 1 cut(s) 651
AspS9I GGNCC 5 cut(s) 97, 209, 219, 251, 519
AsuC2I CCSGG 2 cut(s) 51, 184
AsuHPI GGTGA 2 cut(s) 68, 698
AsuII TTCGAA 1 cut(s) 343
AsuNHI GCTAGC 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 3 cut(s) 97, 209, 219
AxyI CCTNAGG 1 cut(s) 213
BalI TGGCCA 1 cut(s) 359
BarI GAAGNNNNNNTAC 2 cut(s) 927, 959
BbsI GAAGAC 1 cut(s) 543
Bbv12I GWGCWC 2 cut(s) 46, 561
BbvI GCAGC 3 cut(s) 925, 962, 965
BccI CCATC 5 cut(s) 31, 32, 233, 799, 842
BceAI ACGGC 1 cut(s) 489
BciT130I CCWGG 2 cut(s) 101, 875
BcnI CCSGG 2 cut(s) 51, 184
BcoDI GTCTC 3 cut(s) 577, 628, 1003
BfaI CTAG 5 cut(s) 63, 503, 525, 1052, 1117
BfmI CTRYAG 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 593
BisI GCNGC 3 cut(s) 939, 951, 954
BlsI GCNGC 3 cut(s) 940, 952, 955
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 4 cut(s) 51, 101, 184, 875
Bme18I GGWCC 3 cut(s) 97, 209, 219
BmeT110I CYCGRG 1 cut(s) 254
BmgBI CACGTC 1 cut(s) 71
BmgT120I GGNCC 5 cut(s) 97, 209, 219, 251, 519
BmiI GGNNCC 3 cut(s) 220, 253, 1078
BmrFI CCNGG 4 cut(s) 51, 101, 184, 875
BmsI GCATC 4 cut(s) 317, 325, 679, 871
BmtI GCTAGC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 543
BpmI CTGGAG 1 cut(s) 281
Bpu14I TTCGAA 1 cut(s) 343
BpuEI CTTGAG 2 cut(s) 475, 752
BpuMI CCSGG 2 cut(s) 51, 184
BsaAI YACGTR 1 cut(s) 908
BsaBI GATNNNNATC 1 cut(s) 693
BsaJI CCNNGG 3 cut(s) 100, 255, 360
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 6 cut(s) 18, 115, 625, 667, 741, 911
Bse21I CCTNAGG 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 401
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 2 cut(s) 101, 875
BseDI CCNNGG 3 cut(s) 100, 255, 360
BseGI GGATG 1 cut(s) 604
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 6 cut(s) 18, 115, 625, 667, 741, 911
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 3 cut(s) 182, 227, 993
BseRI GAGGAG 1 cut(s) 1017
BseXI GCAGC 3 cut(s) 925, 962, 965
BsgI GTGCAG 1 cut(s) 924
Bsh1236I CGCG 1 cut(s) 651
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 5 cut(s) 22, 252, 359, 521, 660
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 46, 561
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 2 cut(s) 50, 183
BslFI GGGAC 2 cut(s) 232, 500
BslI CCNNNNNNNGG 6 cut(s) 18, 115, 625, 667, 741, 911
BsmAI GTCTC 3 cut(s) 577, 628, 1003
BsmBI CGTCTC 1 cut(s) 1003
BsmFI GGGAC 2 cut(s) 232, 500
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 5 cut(s) 22, 252, 359, 521, 660
BsoBI CYCGRG 1 cut(s) 254
Bsp119I TTCGAA 1 cut(s) 343
Bsp1286I GDGCHC 2 cut(s) 46, 561
Bsp143I GATC 7 cut(s) 138, 163, 613, 677, 787, 823, 1054
BspACI CCGC 2 cut(s) 66, 423
BspANI GGCC 5 cut(s) 22, 252, 359, 521, 660
BspCNI CTCAG 3 cut(s) 183, 226, 992
BspFNI CGCG 1 cut(s) 651
BspLI GGNNCC 3 cut(s) 220, 253, 1078
BspOI GCTAGC 1 cut(s) 66
BspPI GGATC 5 cut(s) 133, 171, 608, 672, 782
BspT104I TTCGAA 1 cut(s) 343
BspTI CTTAAG 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 401
BssECI CCNNGG 3 cut(s) 100, 255, 360
BssMI GATC 7 cut(s) 138, 163, 613, 677, 787, 823, 1054
Bst2UI CCWGG 2 cut(s) 101, 875
Bst4CI ACNGT 1 cut(s) 1061
BstAFI CTTAAG 1 cut(s) 593
BstBAI YACGTR 1 cut(s) 908
BstBI TTCGAA 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 64, 173
BstDEI CTNAG 6 cut(s) 191, 213, 401, 779, 866, 979
BstDSI CCRYGG 1 cut(s) 360
BstEII GGTNACC 1 cut(s) 744
BstENI CCTNNNNNAGG 2 cut(s) 16, 665
BstF5I GGATG 1 cut(s) 604
BstFNI CGCG 1 cut(s) 651
BstHHI GCGC 1 cut(s) 651
BstKTI GATC 7 cut(s) 141, 166, 616, 680, 790, 826, 1057
BstMAI GTCTC 3 cut(s) 577, 628, 1003
BstMBI GATC 7 cut(s) 138, 163, 613, 677, 787, 823, 1054
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 4 cut(s) 356, 406, 657, 947
BstNI CCWGG 2 cut(s) 101, 875
BstNSI RCATGY 2 cut(s) 328, 435
BstPI GGTNACC 1 cut(s) 744
BstSCI CCNGG 4 cut(s) 49, 99, 182, 873
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 3 cut(s) 925, 962, 965
BstV2I GAAGAC 1 cut(s) 543
BstX2I RGATCY 2 cut(s) 677, 787
BstYI RGATCY 2 cut(s) 677, 787
Bsu36I CCTNAGG 1 cut(s) 213
BsuRI GGCC 5 cut(s) 22, 252, 359, 521, 660
BtgI CCRYGG 1 cut(s) 360
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 604
BtsIMutI CAGTG 2 cut(s) 585, 1039
Cac8I GCNNGC 2 cut(s) 64, 173
CaiI CAGNNNCTG 1 cut(s) 755
CfoI GCGC 1 cut(s) 651
Cfr13I GGNCC 5 cut(s) 97, 209, 219, 251, 519
CseI GACGC 1 cut(s) 640
Csp6I GTAC 4 cut(s) 91, 153, 803, 976
CviAII CATG 5 cut(s) 110, 245, 325, 432, 611
CviQI GTAC 4 cut(s) 91, 153, 803, 976
DdeI CTNAG 6 cut(s) 191, 213, 401, 779, 866, 979
DpnI GATC 7 cut(s) 140, 165, 615, 679, 789, 825, 1056
DpnII GATC 7 cut(s) 138, 163, 613, 677, 787, 823, 1054
EaeI YGGCCR 1 cut(s) 357
Eco147I AGGCCT 1 cut(s) 660
Eco47I GGWCC 3 cut(s) 97, 209, 219
Eco57I CTGAAG 1 cut(s) 537
Eco81I CCTNAGG 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 254
Eco91I GGTNACC 1 cut(s) 744
EcoNI CCTNNNNNAGG 2 cut(s) 16, 665
EcoO109I RGGNCCY 3 cut(s) 97, 219, 251
EcoO65I GGTNACC 1 cut(s) 744
EcoRII CCWGG 2 cut(s) 99, 873
EcoT22I ATGCAT 1 cut(s) 694
Esp3I CGTCTC 1 cut(s) 1003
FaeI CATG 5 cut(s) 113, 248, 328, 435, 614
FaqI GGGAC 2 cut(s) 232, 500
FatI CATG 5 cut(s) 109, 244, 324, 431, 610
FblI GTMKAC 1 cut(s) 885
Fnu4HI GCNGC 3 cut(s) 939, 951, 954
FokI GGATG 1 cut(s) 591
Fsp4HI GCNGC 3 cut(s) 939, 951, 954
FspBI CTAG 5 cut(s) 63, 503, 525, 1052, 1117
GlaI GCGC 1 cut(s) 650
GluI GCNGC 3 cut(s) 939, 951, 954
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 5 cut(s) 22, 252, 359, 521, 660
HapII CCGG 2 cut(s) 50, 183
HgaI GACGC 1 cut(s) 640
HhaI GCGC 1 cut(s) 651
Hin1II CATG 5 cut(s) 113, 248, 328, 435, 614
Hin6I GCGC 1 cut(s) 649
HinP1I GCGC 1 cut(s) 649
HincII GTYRAC 2 cut(s) 886, 895
HindII GTYRAC 2 cut(s) 886, 895
HindIII AAGCTT 1 cut(s) 926
HinfI GANTC 7 cut(s) 179, 204, 292, 488, 575, 752, 993
HpaII CCGG 2 cut(s) 50, 183
HphI GGTGA 2 cut(s) 68, 698
Hpy166II GTNNAC 4 cut(s) 235, 274, 886, 895
Hpy188I TCNGA 7 cut(s) 192, 313, 331, 556, 757, 815, 982
Hpy188III TCNNGA 7 cut(s) 264, 289, 298, 675, 785, 1022, 1052
Hpy8I GTNNAC 4 cut(s) 235, 274, 886, 895
Hpy99I CGWCG 1 cut(s) 1028
HpyAV CCTTC 2 cut(s) 71, 232
HpyCH4III ACNGT 1 cut(s) 1061
HpyCH4IV ACGT 2 cut(s) 70, 907
HpyCH4V TGCA 6 cut(s) 197, 308, 566, 692, 707, 941
HpyF10VI GCNNNNNNNGC 4 cut(s) 356, 406, 657, 947
HpyF3I CTNAG 6 cut(s) 191, 213, 401, 779, 866, 979
HpySE526I ACGT 2 cut(s) 70, 907
Hsp92II CATG 5 cut(s) 113, 248, 328, 435, 614
HspAI GCGC 1 cut(s) 649
Kzo9I GATC 7 cut(s) 138, 163, 613, 677, 787, 823, 1054
LmnI GCTCC 1 cut(s) 859
Lsp1109I GCAGC 3 cut(s) 925, 962, 965
LweI GCATC 4 cut(s) 317, 325, 679, 871
MaeI CTAG 5 cut(s) 63, 503, 525, 1052, 1117
MaeII ACGT 2 cut(s) 70, 907
MaeIII GTNAC 1 cut(s) 744
MalI GATC 7 cut(s) 140, 165, 615, 679, 789, 825, 1056
MboI GATC 7 cut(s) 138, 163, 613, 677, 787, 823, 1054
MboII GAAGA 4 cut(s) 47, 377, 543, 833
MflI RGATCY 2 cut(s) 677, 787
MhlI GDGCHC 2 cut(s) 46, 561
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 4 cut(s) 122, 303, 774, 915
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 3 cut(s) 208, 309, 838
Mox20I TGGCCA 1 cut(s) 359
Mph1103I ATGCAT 1 cut(s) 694
MscI TGGCCA 1 cut(s) 359
MseI TTAA 2 cut(s) 6, 594
MslI CAYNNNNRTG 1 cut(s) 609
Msp20I TGGCCA 1 cut(s) 359
MspCI CTTAAG 1 cut(s) 593
MspI CCGG 2 cut(s) 50, 183
MspR9I CCNGG 4 cut(s) 51, 101, 184, 875
Mva1269I GAATGC 1 cut(s) 709
MvaI CCWGG 2 cut(s) 101, 875
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 4 cut(s) 356, 406, 657, 947
NciI CCSGG 2 cut(s) 51, 184
NdeII GATC 7 cut(s) 138, 163, 613, 677, 787, 823, 1054
NheI GCTAGC 1 cut(s) 62
NlaIII CATG 5 cut(s) 113, 248, 328, 435, 614
NlaIV GGNNCC 3 cut(s) 220, 253, 1078
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 2 cut(s) 328, 435
NspV TTCGAA 1 cut(s) 343
PceI AGGCCT 1 cut(s) 660
PciI ACATGT 1 cut(s) 431
PctI GAATGC 1 cut(s) 709
PfeI GAWTC 6 cut(s) 179, 204, 292, 575, 752, 993
PflFI GACNNNGTC 1 cut(s) 890
PflMI CCANNNNNTGG 1 cut(s) 625
PkrI GCNGC 3 cut(s) 940, 952, 955
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
Ppu21I YACGTR 1 cut(s) 908
PpuMI RGGWCCY 2 cut(s) 97, 219
PscI ACATGT 1 cut(s) 431
Psp5II RGGWCCY 2 cut(s) 97, 219
Psp6I CCWGG 2 cut(s) 99, 873
PspEI GGTNACC 1 cut(s) 744
PspGI CCWGG 2 cut(s) 99, 873
PspN4I GGNNCC 3 cut(s) 220, 253, 1078
PspPI GGNCC 5 cut(s) 97, 209, 219, 251, 519
PspPPI RGGWCCY 2 cut(s) 97, 219
PsrI GAACNNNNNNTAC 2 cut(s) 714, 746
PstNI CAGNNNCTG 1 cut(s) 755
PsuI RGATCY 2 cut(s) 677, 787
PsyI GACNNNGTC 1 cut(s) 890
RsaI GTAC 4 cut(s) 92, 154, 804, 977
RsaNI GTAC 4 cut(s) 91, 153, 803, 976
RseI CAYNNNNRTG 1 cut(s) 609
SalI GTCGAC 1 cut(s) 884
SaqAI TTAA 2 cut(s) 6, 594
SatI GCNGC 3 cut(s) 939, 951, 954
Sau3AI GATC 7 cut(s) 138, 163, 613, 677, 787, 823, 1054
Sau96I GGNCC 5 cut(s) 97, 209, 219, 251, 519
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 4 cut(s) 51, 101, 184, 875
SduI GDGCHC 2 cut(s) 46, 561
SfaNI GCATC 4 cut(s) 317, 325, 679, 871
SfcI CTRYAG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 343
SinI GGWCC 3 cut(s) 97, 209, 219
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 3 cut(s) 490, 593, 767
SmoI CTYRAG 3 cut(s) 490, 593, 767
Sse9I AATT 4 cut(s) 122, 303, 774, 915
SseBI AGGCCT 1 cut(s) 660
SsiI CCGC 2 cut(s) 66, 423
SspI AATATT 1 cut(s) 1096
SspMI CTAG 5 cut(s) 63, 503, 525, 1052, 1117
StuI AGGCCT 1 cut(s) 660
StyD4I CCNGG 4 cut(s) 49, 99, 182, 873
TaaI ACNGT 1 cut(s) 1061
TaiI ACGT 2 cut(s) 73, 910
TaqI TCGA 6 cut(s) 46, 177, 319, 343, 885, 996
TaqII GACCGA 1 cut(s) 197
TasI AATT 4 cut(s) 122, 303, 774, 915
TatI WGTACW 1 cut(s) 152
TfiI GAWTC 6 cut(s) 179, 204, 292, 575, 752, 993
Tru1I TTAA 2 cut(s) 6, 594
Tru9I TTAA 2 cut(s) 6, 594
TscAI CASTG 2 cut(s) 585, 1039
TseI GCWGC 3 cut(s) 938, 950, 953
TspGWI ACGGA 1 cut(s) 377
TspRI CASTG 2 cut(s) 585, 1039
Tth111I GACNNNGTC 1 cut(s) 890
Van91I CCANNNNNTGG 1 cut(s) 625
Vha464I CTTAAG 1 cut(s) 593
VpaK11BI GGWCC 3 cut(s) 97, 209, 219
XagI CCTNNNNNAGG 2 cut(s) 16, 665
XbaI TCTAGA 1 cut(s) 1051
XceI RCATGY 2 cut(s) 328, 435
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 885
XspI CTAG 5 cut(s) 63, 503, 525, 1052, 1117
ZrmI AGTACT 1 cut(s) 154
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.