pycom04g10370

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0016879
Physical Location & Seq
Reverse (-)
13118601 .. 13120241
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g10370.3

Sequence Viewer

Length: 1116 bp
ATGGTTGTGTCATGTTGGAGGCCTTCTGCAGTGGATGATGGACCTAGCCGTGGTGGCGAAGCCAGCGGCCGGGTTGATGGGTTGTTATGGTACAAGGACTTTGGGCAGCATGCTTGGGGAGAATTCTCAATGGCTGCCATTCAGGCCAATTCTGTCATCGAGGATCAAAGCCAGCTCGAATCCGGTCCTCTGTGTACAACGAAAGCCGGTCCTCTGGGGACTTTTGTTGGAGTTTATGATGGACACGGAGGGCCTGAGGCTTCAAGATACGTCAATGAAAATCTCTTCTGCAATCTAAAAAGAATTGCAGCTGAGCATCGATGCATGTCGGAAAACGTGATCAAGAAGGCGTACTTGGCGACGGAAGAGAGTTTTCTCTCCGTGGTGAAGAAGCAGTGGCAAAGCAAGCCACAAATTGCATCTGCAGGAACATGTTGTTTGGTGGGGATAATATGCAATGGACTGCTTTACACAGCAAATGTTGGGGACTCTAGGGTGGTTCTAGGAAAATTAGAAAGGGCAACTAAAGAAGTCATGGCTATTCAATTATCTGCAGAGCACAATGCAAGCATAGAATCCGTGAGAGAGGAACTCAAGTCGTTGCATCCACACGATTCAAAGATTGTCGTTTTAAGGCACAGAGTTTGGCGCGTTAAAGGCCTCATTCAGGTTTCGAGATCAATTGGTGACGCGTACTTGAAGAATGCAGAGTTCAACAGAGAGCCTCTACCCCTAAAATATAGGCTACCTGAACCGTTCCTCAAGCCAATTCTAATCCCGGAACCAGAAGTATCGGTAATTAAACTCCAACCGGAAGATAAGTTTCTCATATTCGCTTCTGATGGTCTGTGGGAGAATCTTAGCAACCAGGAGGCTGTCGACATTGTCAACGATTACCCCCGCAAGGGAATAGCAAGAAAGCTGATTGAAGCTGCACTAGAAGAAGCAGCTAAGAAAAGGGAAGTGAGGTACGCAGATTTGAGGAAAATCGAGCGCGGAGTAAGGCGACATTTTCACGACGACATCACGGTTGTGGTGGTGTTTCTGAATCAAAGCCTGTTGAAAAATGGAAGCTCCCCACGCAATTCTCATTTTTCATTAAAACCCAACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

372

Amino Acids

41.4

Weight (kDa)

8.56

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016879)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14920
malus_domestica MD04G1111100.v1.1 MD12G1129700.v1.1
prunus_persica Prupe.6G245000_v2.0.a1
pyrus_communis pycom04g10370 pycom12g12590
rosa_chinensis RchiOBHm_Chr3g0468121
rosa_laevigata RLG00000024447
rosa_multiflora Rmu_sc0003659.1_g000011
rosa_roxburghii Rroxscaffold_6G00413010
rosa_rugosa Rorug03G0093200
rosa_samantha Rh3CG162700 Rh3DG163300
rosa_wichuraiana Rw3G013350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 879
AccII CGCG 3 cut(s) 651, 692, 996
AciI CCGC 3 cut(s) 66, 901, 996
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 5 cut(s) 92, 196, 353, 695, 971
AfiI CCNNNNNNNGG 5 cut(s) 50, 69, 667, 904, 905
AflIII ACRYGT 2 cut(s) 431, 690
AgsI TTSAA 7 cut(s) 264, 545, 618, 700, 715, 929, 1063
AjnI CCWGG 1 cut(s) 867
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AleI CACNNNNGTG 1 cut(s) 1031
AluBI AGCT 6 cut(s) 175, 311, 922, 932, 950, 1074
AluI AGCT 6 cut(s) 175, 311, 922, 932, 950, 1074
Alw21I GWGCWC 1 cut(s) 561
AlwI GGATC 1 cut(s) 171
AoxI GGCC 5 cut(s) 20, 67, 144, 251, 658
ApeKI GCWGC 5 cut(s) 106, 134, 308, 932, 947
ApoI RAATTY 1 cut(s) 122
AspLEI GCGC 2 cut(s) 651, 996
AspS9I GGNCC 4 cut(s) 41, 185, 209, 251
AsuC2I CCSGG 2 cut(s) 71, 779
AsuHPI GGTGA 2 cut(s) 397, 698
AvaII GGWCC 3 cut(s) 41, 185, 209
AxyI CCTNAGG 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 561
BbvI GCAGC 5 cut(s) 118, 121, 320, 919, 959
BccI CCATC 4 cut(s) 32, 71, 233, 836
BceAI ACGGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 869
BclI TGATCA 1 cut(s) 339
BcnI CCSGG 2 cut(s) 71, 779
BfaI CTAG 5 cut(s) 45, 492, 503, 938, 1114
BfmI CTRYAG 3 cut(s) 27, 423, 552
BglI GCCNNNNNGGC 2 cut(s) 54, 143
BisI GCNGC 6 cut(s) 67, 107, 135, 309, 933, 948
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 6 cut(s) 68, 108, 136, 310, 934, 949
Bme1390I CCNGG 3 cut(s) 71, 779, 869
Bme18I GGWCC 3 cut(s) 41, 185, 209
BmgT120I GGNCC 4 cut(s) 41, 185, 209, 251
BmiI GGNNCC 1 cut(s) 783
BmrFI CCNGG 3 cut(s) 71, 779, 869
BmsI GCATC 4 cut(s) 311, 325, 428, 613
BplI GAGNNNNNCTC 2 cut(s) 576, 608
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 578, 746
BpuMI CCSGG 2 cut(s) 71, 779
Bsa29I ATCGAT 1 cut(s) 319
BsaJI CCNNGG 2 cut(s) 49, 381
BsaWI WCCGGW 2 cut(s) 182, 811
Bsc4I CCNNNNNNNGG 5 cut(s) 50, 69, 667, 904, 905
Bse118I RCCGGY 1 cut(s) 206
Bse21I CCTNAGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 463
BseBI CCWGG 1 cut(s) 869
BseCI ATCGAT 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 49, 381
BseGI GGATG 2 cut(s) 40, 604
BseLI CCNNNNNNNGG 5 cut(s) 50, 69, 667, 904, 905
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 2 cut(s) 246, 303
BseX3I CGGCCG 1 cut(s) 67
BseXI GCAGC 5 cut(s) 118, 121, 320, 919, 959
BsgI GTGCAG 1 cut(s) 918
Bsh1236I CGCG 3 cut(s) 651, 692, 996
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 5 cut(s) 22, 69, 146, 253, 660
BshVI ATCGAT 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 561
BsiSI CCGG 5 cut(s) 70, 183, 207, 779, 812
BslFI GGGAC 2 cut(s) 232, 500
BslI CCNNNNNNNGG 5 cut(s) 50, 69, 667, 904, 905
BsmFI GGGAC 2 cut(s) 232, 500
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 5 cut(s) 22, 69, 146, 253, 660
Bsp1286I GDGCHC 1 cut(s) 561
Bsp1407I TGTACA 1 cut(s) 194
Bsp143I GATC 3 cut(s) 163, 339, 677
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 3 cut(s) 66, 901, 996
BspANI GGCC 5 cut(s) 22, 69, 146, 253, 660
BspCNI CTCAG 2 cut(s) 247, 304
BspDI ATCGAT 1 cut(s) 319
BspFNI CGCG 3 cut(s) 651, 692, 996
BspLI GGNNCC 1 cut(s) 783
BspMAI CTGCAG 3 cut(s) 31, 427, 556
BspPI GGATC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 206
BsrGI TGTACA 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 49, 381
BssMI GATC 3 cut(s) 163, 339, 677
Bst2UI CCWGG 1 cut(s) 869
Bst4CI ACNGT 2 cut(s) 756, 1030
Bst6I CTCTTC 2 cut(s) 290, 360
BstAUI TGTACA 1 cut(s) 194
BstC8I GCNNGC 5 cut(s) 64, 111, 173, 407, 568
BstDEI CTNAG 4 cut(s) 255, 312, 860, 951
BstDSI CCRYGG 2 cut(s) 49, 381
BstENI CCTNNNNNAGG 1 cut(s) 665
BstF5I GGATG 2 cut(s) 40, 604
BstFNI CGCG 3 cut(s) 651, 692, 996
BstHHI GCGC 2 cut(s) 651, 996
BstKTI GATC 3 cut(s) 166, 342, 680
BstMBI GATC 3 cut(s) 163, 339, 677
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 7 cut(s) 54, 63, 143, 356, 406, 657, 1080
BstNI CCWGG 1 cut(s) 869
BstNSI RCATGY 3 cut(s) 113, 328, 435
BstSCI CCNGG 3 cut(s) 69, 777, 867
BstSFI CTRYAG 3 cut(s) 27, 423, 552
BstUI CGCG 3 cut(s) 651, 692, 996
BstV1I GCAGC 5 cut(s) 118, 121, 320, 919, 959
BstZI CGGCCG 1 cut(s) 67
Bsu15I ATCGAT 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 5 cut(s) 22, 69, 146, 253, 660
BsuTUI ATCGAT 1 cut(s) 319
BtgI CCRYGG 2 cut(s) 49, 381
BtsCI GGATG 2 cut(s) 40, 604
BtsI GCAGTG 2 cut(s) 36, 401
BtsIMutI CAGTG 2 cut(s) 36, 401
Cac8I GCNNGC 5 cut(s) 64, 111, 173, 407, 568
CfoI GCGC 2 cut(s) 651, 996
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 4 cut(s) 41, 185, 209, 251
ClaI ATCGAT 1 cut(s) 319
CseI GACGC 1 cut(s) 698
Csp6I GTAC 5 cut(s) 91, 195, 352, 694, 970
CviAII CATG 5 cut(s) 12, 110, 325, 432, 535
CviQI GTAC 5 cut(s) 91, 195, 352, 694, 970
DdeI CTNAG 4 cut(s) 255, 312, 860, 951
DpnI GATC 3 cut(s) 165, 341, 679
DpnII GATC 3 cut(s) 163, 339, 677
EaeI YGGCCR 1 cut(s) 67
EagI CGGCCG 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 290, 360
EarI CTCTTC 2 cut(s) 290, 360
EclXI CGGCCG 1 cut(s) 67
Eco147I AGGCCT 2 cut(s) 22, 660
Eco47I GGWCC 3 cut(s) 41, 185, 209
Eco52I CGGCCG 1 cut(s) 67
Eco81I CCTNAGG 1 cut(s) 255
EcoNI CCTNNNNNAGG 1 cut(s) 665
EcoO109I RGGNCCY 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 867
EcoT22I ATGCAT 1 cut(s) 326
FaeI CATG 5 cut(s) 15, 113, 328, 435, 538
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 2 cut(s) 232, 500
FatI CATG 5 cut(s) 11, 109, 324, 431, 534
FauI CCCGC 1 cut(s) 908
FbaI TGATCA 1 cut(s) 339
FblI GTMKAC 1 cut(s) 879
Fnu4HI GCNGC 6 cut(s) 67, 107, 135, 309, 933, 948
FokI GGATG 2 cut(s) 47, 591
Fsp4HI GCNGC 6 cut(s) 67, 107, 135, 309, 933, 948
FspBI CTAG 5 cut(s) 45, 492, 503, 938, 1114
GlaI GCGC 2 cut(s) 650, 995
GluI GCNGC 6 cut(s) 67, 107, 135, 309, 933, 948
HaeIII GGCC 5 cut(s) 22, 69, 146, 253, 660
HapII CCGG 5 cut(s) 70, 183, 207, 779, 812
HgaI GACGC 1 cut(s) 698
HhaI GCGC 2 cut(s) 651, 996
Hin1II CATG 5 cut(s) 15, 113, 328, 435, 538
Hin6I GCGC 2 cut(s) 649, 994
HinP1I GCGC 2 cut(s) 649, 994
HincII GTYRAC 2 cut(s) 880, 889
HindII GTYRAC 2 cut(s) 880, 889
HinfI GANTC 6 cut(s) 179, 488, 575, 614, 856, 1048
HpaII CCGG 5 cut(s) 70, 183, 207, 779, 812
HphI GGTGA 2 cut(s) 397, 698
Hpy166II GTNNAC 3 cut(s) 195, 880, 889
Hpy188I TCNGA 3 cut(s) 331, 841, 1047
Hpy188III TCNNGA 4 cut(s) 264, 343, 675, 1016
Hpy8I GTNNAC 3 cut(s) 195, 880, 889
Hpy99I CGWCG 2 cut(s) 364, 1022
HpyAV CCTTC 2 cut(s) 33, 340
HpyCH4III ACNGT 2 cut(s) 756, 1030
HpyCH4IV ACGT 2 cut(s) 270, 336
HpyF10VI GCNNNNNNNGC 7 cut(s) 54, 63, 143, 356, 406, 657, 1080
HpyF3I CTNAG 4 cut(s) 255, 312, 860, 951
HpySE526I ACGT 2 cut(s) 270, 336
Hsp92II CATG 5 cut(s) 15, 113, 328, 435, 538
HspAI GCGC 2 cut(s) 649, 994
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 3 cut(s) 163, 339, 677
LmnI GCTCC 1 cut(s) 1079
Lsp1109I GCAGC 5 cut(s) 118, 121, 320, 919, 959
LweI GCATC 4 cut(s) 311, 325, 428, 613
MaeI CTAG 5 cut(s) 45, 492, 503, 938, 1114
MaeII ACGT 2 cut(s) 270, 336
MaeIII GTNAC 1 cut(s) 686
MalI GATC 3 cut(s) 165, 341, 679
MboI GATC 3 cut(s) 163, 339, 677
MboII GAAGA 6 cut(s) 277, 377, 400, 712, 827, 953
MfeI CAATTG 1 cut(s) 681
MhlI GDGCHC 1 cut(s) 561
MluI ACGCGT 1 cut(s) 690
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 3 cut(s) 208, 309, 832
Mph1103I ATGCAT 1 cut(s) 326
MseI TTAA 4 cut(s) 632, 654, 801, 1100
MslI CAYNNNNRTG 1 cut(s) 1031
MspA1I CMGCKG 2 cut(s) 66, 311
MspI CCGG 5 cut(s) 70, 183, 207, 779, 812
MspR9I CCNGG 3 cut(s) 71, 779, 869
MunI CAATTG 1 cut(s) 681
Mva1269I GAATGC 1 cut(s) 709
MvaI CCWGG 1 cut(s) 869
MvnI CGCG 3 cut(s) 651, 692, 996
MwoI GCNNNNNNNGC 7 cut(s) 54, 63, 143, 356, 406, 657, 1080
NciI CCSGG 2 cut(s) 71, 779
NdeII GATC 3 cut(s) 163, 339, 677
NlaIII CATG 5 cut(s) 15, 113, 328, 435, 538
NlaIV GGNNCC 1 cut(s) 783
NmuCI GTSAC 1 cut(s) 686
NsiI ATGCAT 1 cut(s) 326
NspI RCATGY 3 cut(s) 113, 328, 435
OliI CACNNNNGTG 1 cut(s) 1031
PaeI GCATGC 1 cut(s) 113
PceI AGGCCT 2 cut(s) 22, 660
PciI ACATGT 1 cut(s) 431
PctI GAATGC 1 cut(s) 709
PfeI GAWTC 5 cut(s) 179, 575, 614, 856, 1048
PflFI GACNNNGTC 1 cut(s) 884
PfoI TCCNGGA 1 cut(s) 777
PkrI GCNGC 6 cut(s) 68, 108, 136, 310, 934, 949
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
PscI ACATGT 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 867
PspGI CCWGG 1 cut(s) 867
PspN4I GGNNCC 1 cut(s) 783
PspPI GGNCC 4 cut(s) 41, 185, 209, 251
PstI CTGCAG 3 cut(s) 31, 427, 556
PsyI GACNNNGTC 1 cut(s) 884
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 5 cut(s) 92, 196, 353, 695, 971
RsaNI GTAC 5 cut(s) 91, 195, 352, 694, 970
RseI CAYNNNNRTG 1 cut(s) 1031
SalI GTCGAC 1 cut(s) 878
SaqAI TTAA 4 cut(s) 632, 654, 801, 1100
SatI GCNGC 6 cut(s) 67, 107, 135, 309, 933, 948
Sau3AI GATC 3 cut(s) 163, 339, 677
Sau96I GGNCC 4 cut(s) 41, 185, 209, 251
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 3 cut(s) 71, 779, 869
SduI GDGCHC 1 cut(s) 561
SfaNI GCATC 4 cut(s) 311, 325, 428, 613
SfcI CTRYAG 3 cut(s) 27, 423, 552
SinI GGWCC 3 cut(s) 41, 185, 209
SmiMI CAYNNNNRTG 1 cut(s) 1031
SmlI CTYRAG 2 cut(s) 593, 761
SmoI CTYRAG 2 cut(s) 593, 761
SphI GCATGC 1 cut(s) 113
SseBI AGGCCT 2 cut(s) 22, 660
SsiI CCGC 3 cut(s) 66, 901, 996
SspMI CTAG 5 cut(s) 45, 492, 503, 938, 1114
StuI AGGCCT 2 cut(s) 22, 660
StyD4I CCNGG 3 cut(s) 69, 777, 867
TaaI ACNGT 2 cut(s) 756, 1030
TaiI ACGT 2 cut(s) 273, 339
TaqI TCGA 6 cut(s) 159, 177, 319, 674, 879, 990
TatI WGTACW 1 cut(s) 194
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 5 cut(s) 179, 575, 614, 856, 1048
Tru1I TTAA 4 cut(s) 632, 654, 801, 1100
Tru9I TTAA 4 cut(s) 632, 654, 801, 1100
TscAI CASTG 2 cut(s) 36, 401
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 5 cut(s) 106, 134, 308, 932, 947
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 2 cut(s) 291, 1086
TspGWI ACGGA 4 cut(s) 261, 370, 377, 568
TspRI CASTG 2 cut(s) 36, 401
Tth111I GACNNNGTC 1 cut(s) 884
VpaK11BI GGWCC 3 cut(s) 41, 185, 209
XagI CCTNNNNNAGG 1 cut(s) 665
XapI RAATTY 1 cut(s) 122
XceI RCATGY 3 cut(s) 113, 328, 435
XmiI GTMKAC 1 cut(s) 879
XspI CTAG 5 cut(s) 45, 492, 503, 938, 1114
Zsp2I ATGCAT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.