MD12G1129700.v1.1

phosphatase 2C

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
20487222 .. 20489765
2544 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1129700.v1.1.491

Sequence Viewer

Length: 1284 bp
ATGGTGTCTGGTTTTGAAGGGTATAAGGATCTTGAGAATGGGGTTTCGGGTTTGGAACATAAACAGAAACTTGAACTAGGGTTAAGTCTAATTCTTGCTCTTGTCGCTCTCGATATCGATTTGGTCAATTTTTCGATTTTGTTGTGTGTTATAAAGTGGTTGCTTGGAAAAATGGTTAGGTCATGTTGGAGGCCATCTGCAGTGGATGATGGACTTCGACGTGGCGGGGAAGCCAGCGGCCAGGTTGATGGGTTGTTGTGGTACAAGGACTTTGGGCAGCATGCTTGGGGAAAATTCTCAATGGCTGCCGTTCAGGCCAATTCTGTTATCGAGGATCAAAGCCAGATCGAATCCGGTCCTTTGTGTACAACAAAATCCGGTCTGGGAACTTTCGTTGGAGTTTATGATGGACATGGAGGGCCTGAAGCTTCAAGATATGTCAATGAAAATCTCTTCCGCAATCTAAAAAGGATTGCAGCTGAGCATCGATGCATGTCGGAAACCGTGATCAAGAAGGCGTACTTGGCGACGGAAGAGAGTTTTCTATCGGTGGTGAAGAAGCAGTGGCAAAGCAAGCCACAAATTGCATCTACAGGAACATGTTGTTTGGTGGGGATAATATGCAATGGACTGCTTTACACGGCAAATGTTGGGGACTCTAGAGTGGTTCTGGGAAAACTAGAAAGGGAAACTAAAGAAGTCACGGCCATTCAATTATCTGCAGAGCACAATGCAAGCATAGAATCAGTGAGAGAGGAACTGCGGTCGTTGCATCCACACGATTCACAGATTGTCGTTTTAAGGCACCAAGTTTGGCGCGTGAAGGGCCTCATTCAGGTTTCGAGATCAATTGGTGACGCGTACTTAAAGAACGCAGAGTTCAACAGAGAGCCTCTACCTCTAAAATATAGGCTACCTGAACCTTTTCTCAAGCCAATTCTAATCCCGGAACCAGAAGTATCAGTAATTAAACTCCGACCGGAAGATCAGTTTCTCATATTTGCTTCTGATGGTCTGTGGGAGCATCTTAGCAACCAGGATGCCGTCGACATTGTCAACAATTACCCCCGCAAGGGAATAGCAAGGAAGCTGATTGAAGCTGCACTACAAGCAGCAGCCAAGAAAAGGGAAGTGAGGTATACAGACTTGAGGATTATCGAACGCGGAGTACGACGGCATTTTCACGACGACATCACTGTGGTGGTGTTGTTTCTAAATCCAAGCCTGTTGAAAAATGGAGGCTCCCCTCGCAGGTCTCAGTTTTCATTAAAACCCAGCTTCTAG

Protein Analysis

428

Amino Acids

47.74

Weight (kDa)

8.81

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 127 - 374 2.5e-38 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016879)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14920
malus_domestica MD04G1111100.v1.1 MD12G1129700.v1.1
prunus_persica Prupe.6G245000_v2.0.a1
pyrus_communis pycom04g10370 pycom12g12590
rosa_chinensis RchiOBHm_Chr3g0468121
rosa_laevigata RLG00000024447
rosa_multiflora Rmu_sc0003659.1_g000011
rosa_roxburghii Rroxscaffold_6G00413010
rosa_rugosa Rorug03G0093200
rosa_samantha Rh3CG162700 Rh3DG163300
rosa_wichuraiana Rw3G013350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 1242
AccB1I GGYRCC 1 cut(s) 804
AccI GTMKAC 2 cut(s) 1047, 1139
AccII CGCG 3 cut(s) 819, 860, 1164
AciI CCGC 6 cut(s) 225, 237, 457, 763, 1069, 1164
AclWI GGATC 2 cut(s) 36, 342
AcoI YGGCCR 2 cut(s) 238, 705
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 5 cut(s) 263, 367, 521, 863, 1170
AfiI CCNNNNNNNGG 5 cut(s) 835, 1072, 1073, 1125, 1251
AflIII ACRYGT 2 cut(s) 599, 858
AgsI TTSAA 7 cut(s) 17, 74, 432, 713, 883, 1097, 1231
AjiI CACGTC 1 cut(s) 221
AjnI CCWGG 2 cut(s) 240, 1035
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AleI CACNNNNGTG 1 cut(s) 1199
AluBI AGCT 5 cut(s) 428, 479, 1090, 1100, 1278
AluI AGCT 5 cut(s) 428, 479, 1090, 1100, 1278
Alw21I GWGCWC 1 cut(s) 729
Alw26I GTCTC 1 cut(s) 1260
AlwI GGATC 2 cut(s) 36, 342
AoxI GGCC 6 cut(s) 191, 238, 315, 419, 705, 826
ApeKI GCWGC 6 cut(s) 277, 305, 476, 1100, 1112, 1115
ApoI RAATTY 1 cut(s) 293
Asp700I GAANNNNTTC 1 cut(s) 924
AspLEI GCGC 1 cut(s) 819
AspS9I GGNCC 3 cut(s) 356, 419, 826
AsuC2I CCSGG 1 cut(s) 947
AsuHPI GGTGA 2 cut(s) 565, 866
AvaII GGWCC 1 cut(s) 356
BanI GGYRCC 1 cut(s) 804
BarI GAAGNNNNNNTAC 2 cut(s) 1089, 1121
Bbv12I GWGCWC 1 cut(s) 729
BbvI GCAGC 6 cut(s) 289, 292, 488, 1087, 1124, 1127
BccI CCATC 5 cut(s) 202, 203, 242, 401, 1004
BceAI ACGGC 5 cut(s) 293, 657, 720, 1028, 1190
BciT130I CCWGG 2 cut(s) 242, 1037
BclI TGATCA 1 cut(s) 507
BcnI CCSGG 1 cut(s) 947
BcoDI GTCTC 1 cut(s) 1260
BfaI CTAG 4 cut(s) 77, 660, 680, 1282
BfmI CTRYAG 3 cut(s) 198, 591, 720
BfuAI ACCTGC 1 cut(s) 1242
BglI GCCNNNNNGGC 1 cut(s) 314
BisI GCNGC 7 cut(s) 238, 278, 306, 477, 1101, 1113, 1116
BlpI GCTNAGC 1 cut(s) 480
BlsI GCNGC 7 cut(s) 239, 279, 307, 478, 1102, 1114, 1117
Bme1390I CCNGG 3 cut(s) 242, 947, 1037
Bme18I GGWCC 1 cut(s) 356
BmgBI CACGTC 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 356, 419, 826
BmiI GGNNCC 3 cut(s) 806, 951, 1243
BmrFI CCNGG 3 cut(s) 242, 947, 1037
BmsI GCATC 6 cut(s) 479, 493, 596, 781, 1030, 1033
Bpu1102I GCTNAGC 1 cut(s) 480
BpuEI CTTGAG 3 cut(s) 53, 914, 1168
BpuMI CCSGG 1 cut(s) 947
Bsa29I ATCGAT 2 cut(s) 117, 487
BsaI GGTCTC 1 cut(s) 1260
BsaWI WCCGGW 3 cut(s) 353, 377, 979
Bsc4I CCNNNNNNNGG 5 cut(s) 835, 1072, 1073, 1125, 1251
Bse3DI GCAATG 1 cut(s) 631
BseBI CCWGG 2 cut(s) 242, 1037
BseCI ATCGAT 2 cut(s) 117, 487
BseGI GGATG 3 cut(s) 211, 772, 1045
BseLI CCNNNNNNNGG 5 cut(s) 835, 1072, 1073, 1125, 1251
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 2 cut(s) 471, 1271
BseXI GCAGC 6 cut(s) 289, 292, 488, 1087, 1124, 1127
BseYI CCCAGC 1 cut(s) 1274
BsgI GTGCAG 1 cut(s) 1086
Bsh1236I CGCG 3 cut(s) 819, 860, 1164
Bsh1285I CGRYCG 2 cut(s) 767, 980
BshFI GGCC 6 cut(s) 193, 240, 317, 421, 707, 828
BshNI GGYRCC 1 cut(s) 804
BshVI ATCGAT 2 cut(s) 117, 487
BsiEI CGRYCG 2 cut(s) 767, 980
BsiHKAI GWGCWC 1 cut(s) 729
BsiSI CCGG 4 cut(s) 354, 378, 947, 980
BslFI GGGAC 1 cut(s) 668
BslI CCNNNNNNNGG 5 cut(s) 835, 1072, 1073, 1125, 1251
BsmAI GTCTC 1 cut(s) 1260
BsmFI GGGAC 1 cut(s) 668
BsnI GGCC 6 cut(s) 193, 240, 317, 421, 707, 828
Bso31I GGTCTC 1 cut(s) 1260
Bsp1286I GDGCHC 1 cut(s) 729
Bsp1407I TGTACA 1 cut(s) 365
Bsp143I GATC 6 cut(s) 28, 334, 345, 507, 845, 985
Bsp1720I GCTNAGC 1 cut(s) 480
BspACI CCGC 6 cut(s) 225, 237, 457, 763, 1069, 1164
BspANI GGCC 6 cut(s) 193, 240, 317, 421, 707, 828
BspCNI CTCAG 2 cut(s) 472, 1270
BspDI ATCGAT 2 cut(s) 117, 487
BspFNI CGCG 3 cut(s) 819, 860, 1164
BspLI GGNNCC 3 cut(s) 806, 951, 1243
BspMAI CTGCAG 2 cut(s) 202, 724
BspMI ACCTGC 1 cut(s) 1242
BspPI GGATC 2 cut(s) 36, 342
BspT107I GGYRCC 1 cut(s) 804
BspTNI GGTCTC 1 cut(s) 1260
BsrDI GCAATG 1 cut(s) 631
BsrGI TGTACA 1 cut(s) 365
BssMI GATC 6 cut(s) 28, 334, 345, 507, 845, 985
BssNAI GTATAC 1 cut(s) 1140
Bst1107I GTATAC 1 cut(s) 1140
Bst2UI CCWGG 2 cut(s) 242, 1037
Bst4CI ACNGT 2 cut(s) 505, 1198
Bst6I CTCTTC 2 cut(s) 458, 528
BstAUI TGTACA 1 cut(s) 365
BstC8I GCNNGC 4 cut(s) 235, 282, 575, 736
BstDEI CTNAG 3 cut(s) 480, 1028, 1257
BstENI CCTNNNNNAGG 1 cut(s) 833
BstF5I GGATG 3 cut(s) 211, 772, 1045
BstFNI CGCG 3 cut(s) 819, 860, 1164
BstHHI GCGC 1 cut(s) 819
BstKTI GATC 6 cut(s) 31, 337, 348, 510, 848, 988
BstMAI GTCTC 1 cut(s) 1260
BstMBI GATC 6 cut(s) 28, 334, 345, 507, 845, 985
BstMCI CGRYCG 2 cut(s) 767, 980
BstMWI GCNNNNNNNGC 8 cut(s) 104, 314, 524, 574, 769, 825, 1109, 1248
BstNI CCWGG 2 cut(s) 242, 1037
BstNSI RCATGY 3 cut(s) 284, 496, 603
BstSCI CCNGG 3 cut(s) 240, 945, 1035
BstSFI CTRYAG 3 cut(s) 198, 591, 720
BstUI CGCG 3 cut(s) 819, 860, 1164
BstV1I GCAGC 6 cut(s) 289, 292, 488, 1087, 1124, 1127
BstX2I RGATCY 1 cut(s) 28
BstXI CCANNNNNNTGG 1 cut(s) 248
BstYI RGATCY 1 cut(s) 28
BstZ17I GTATAC 1 cut(s) 1140
Bsu15I ATCGAT 2 cut(s) 117, 487
BsuRI GGCC 6 cut(s) 193, 240, 317, 421, 707, 828
BsuTUI ATCGAT 2 cut(s) 117, 487
BtrI CACGTC 1 cut(s) 221
BtsCI GGATG 3 cut(s) 211, 772, 1045
BtsI GCAGTG 2 cut(s) 207, 569
BtsIMutI CAGTG 4 cut(s) 207, 569, 753, 1194
BveI ACCTGC 1 cut(s) 1242
Cac8I GCNNGC 4 cut(s) 235, 282, 575, 736
CfoI GCGC 1 cut(s) 819
Cfr13I GGNCC 3 cut(s) 356, 419, 826
ClaI ATCGAT 2 cut(s) 117, 487
CseI GACGC 1 cut(s) 866
Csp6I GTAC 5 cut(s) 262, 366, 520, 862, 1169
CviAII CATG 5 cut(s) 183, 281, 413, 493, 600
CviQI GTAC 5 cut(s) 262, 366, 520, 862, 1169
DdeI CTNAG 3 cut(s) 480, 1028, 1257
DpnI GATC 6 cut(s) 30, 336, 347, 509, 847, 987
DpnII GATC 6 cut(s) 28, 334, 345, 507, 845, 985
EaeI YGGCCR 2 cut(s) 238, 705
Eam1104I CTCTTC 2 cut(s) 458, 528
EarI CTCTTC 2 cut(s) 458, 528
Eco31I GGTCTC 1 cut(s) 1260
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 444
EcoNI CCTNNNNNAGG 1 cut(s) 833
EcoO109I RGGNCCY 2 cut(s) 419, 826
EcoRII CCWGG 2 cut(s) 240, 1035
EcoRV GATATC 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 494
FaeI CATG 5 cut(s) 186, 284, 416, 496, 603
FalI AAGNNNNNCTT 2 cut(s) 506, 538
FaqI GGGAC 1 cut(s) 668
FatI CATG 5 cut(s) 182, 280, 412, 492, 599
FauI CCCGC 2 cut(s) 218, 1076
FbaI TGATCA 1 cut(s) 507
FblI GTMKAC 2 cut(s) 1047, 1139
Fnu4HI GCNGC 7 cut(s) 238, 278, 306, 477, 1101, 1113, 1116
FokI GGATG 3 cut(s) 218, 759, 1052
Fsp4HI GCNGC 7 cut(s) 238, 278, 306, 477, 1101, 1113, 1116
FspBI CTAG 4 cut(s) 77, 660, 680, 1282
GlaI GCGC 1 cut(s) 818
GluI GCNGC 7 cut(s) 238, 278, 306, 477, 1101, 1113, 1116
GsaI CCCAGC 1 cut(s) 1278
HaeIII GGCC 6 cut(s) 193, 240, 317, 421, 707, 828
HapII CCGG 4 cut(s) 354, 378, 947, 980
HgaI GACGC 1 cut(s) 866
HhaI GCGC 1 cut(s) 819
Hin1II CATG 5 cut(s) 186, 284, 416, 496, 603
Hin6I GCGC 1 cut(s) 817
HinP1I GCGC 1 cut(s) 817
HincII GTYRAC 2 cut(s) 1048, 1057
HindII GTYRAC 2 cut(s) 1048, 1057
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 4 cut(s) 350, 656, 743, 782
HpaII CCGG 4 cut(s) 354, 378, 947, 980
HphI GGTGA 2 cut(s) 565, 866
Hpy166II GTNNAC 4 cut(s) 366, 1048, 1057, 1140
Hpy188I TCNGA 3 cut(s) 499, 977, 1009
Hpy188III TCNNGA 7 cut(s) 32, 110, 432, 511, 660, 843, 1184
Hpy8I GTNNAC 4 cut(s) 366, 1048, 1057, 1140
Hpy99I CGWCG 5 cut(s) 222, 532, 1049, 1176, 1190
HpyAV CCTTC 3 cut(s) 11, 508, 817
HpyCH4III ACNGT 2 cut(s) 505, 1198
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 9 cut(s) 200, 476, 492, 587, 624, 722, 734, 772, 1103
HpyF10VI GCNNNNNNNGC 8 cut(s) 104, 314, 524, 574, 769, 825, 1109, 1248
HpyF3I CTNAG 3 cut(s) 480, 1028, 1257
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 5 cut(s) 186, 284, 416, 496, 603
HspAI GCGC 1 cut(s) 817
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 6 cut(s) 28, 334, 345, 507, 845, 985
LmnI GCTCC 2 cut(s) 1021, 1247
Lsp1109I GCAGC 6 cut(s) 289, 292, 488, 1087, 1124, 1127
LweI GCATC 6 cut(s) 479, 493, 596, 781, 1030, 1033
MaeI CTAG 4 cut(s) 77, 660, 680, 1282
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 2 cut(s) 700, 854
MalI GATC 6 cut(s) 30, 336, 347, 509, 847, 987
MboI GATC 6 cut(s) 28, 334, 345, 507, 845, 985
MboII GAAGA 4 cut(s) 445, 545, 568, 995
MfeI CAATTG 1 cut(s) 849
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 729
MluI ACGCGT 1 cut(s) 858
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 4 cut(s) 167, 376, 477, 1000
Mph1103I ATGCAT 1 cut(s) 494
MroXI GAANNNNTTC 1 cut(s) 924
MseI TTAA 5 cut(s) 83, 800, 866, 969, 1268
MslI CAYNNNNRTG 2 cut(s) 1196, 1199
MspA1I CMGCKG 2 cut(s) 237, 479
MspI CCGG 4 cut(s) 354, 378, 947, 980
MspR9I CCNGG 3 cut(s) 242, 947, 1037
MunI CAATTG 1 cut(s) 849
MvaI CCWGG 2 cut(s) 242, 1037
MvnI CGCG 3 cut(s) 819, 860, 1164
MwoI GCNNNNNNNGC 8 cut(s) 104, 314, 524, 574, 769, 825, 1109, 1248
NciI CCSGG 1 cut(s) 947
NdeII GATC 6 cut(s) 28, 334, 345, 507, 845, 985
NlaIII CATG 5 cut(s) 186, 284, 416, 496, 603
NlaIV GGNNCC 3 cut(s) 806, 951, 1243
NmuCI GTSAC 2 cut(s) 700, 854
NsiI ATGCAT 1 cut(s) 494
NspI RCATGY 3 cut(s) 284, 496, 603
OliI CACNNNNGTG 1 cut(s) 1199
PaeI GCATGC 1 cut(s) 284
PciI ACATGT 1 cut(s) 599
PcsI WCGNNNNNNNCGW 1 cut(s) 1168
PdmI GAANNNNTTC 1 cut(s) 924
PfeI GAWTC 3 cut(s) 350, 743, 782
PflFI GACNNNGTC 1 cut(s) 1052
PfoI TCCNGGA 1 cut(s) 945
PkrI GCNGC 7 cut(s) 239, 279, 307, 478, 1102, 1114, 1117
PleI GAGTC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 650
PscI ACATGT 1 cut(s) 599
PsiI TTATAA 1 cut(s) 152
Psp6I CCWGG 2 cut(s) 240, 1035
PspFI CCCAGC 1 cut(s) 1274
PspGI CCWGG 2 cut(s) 240, 1035
PspN4I GGNNCC 3 cut(s) 806, 951, 1243
PspPI GGNCC 3 cut(s) 356, 419, 826
PsrI GAACNNNNNNTAC 2 cut(s) 1152, 1184
PstI CTGCAG 2 cut(s) 202, 724
PsuI RGATCY 1 cut(s) 28
PsyI GACNNNGTC 1 cut(s) 1052
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 5 cut(s) 263, 367, 521, 863, 1170
RsaNI GTAC 5 cut(s) 262, 366, 520, 862, 1169
RseI CAYNNNNRTG 2 cut(s) 1196, 1199
SalI GTCGAC 1 cut(s) 1046
SaqAI TTAA 5 cut(s) 83, 800, 866, 969, 1268
SatI GCNGC 7 cut(s) 238, 278, 306, 477, 1101, 1113, 1116
Sau3AI GATC 6 cut(s) 28, 334, 345, 507, 845, 985
Sau96I GGNCC 3 cut(s) 356, 419, 826
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 3 cut(s) 242, 947, 1037
SduI GDGCHC 1 cut(s) 729
SfaNI GCATC 6 cut(s) 479, 493, 596, 781, 1030, 1033
SfcI CTRYAG 3 cut(s) 198, 591, 720
SinI GGWCC 1 cut(s) 356
SmiMI CAYNNNNRTG 2 cut(s) 1196, 1199
SmlI CTYRAG 3 cut(s) 32, 929, 1147
SmoI CTYRAG 3 cut(s) 32, 929, 1147
SphI GCATGC 1 cut(s) 284
SsiI CCGC 6 cut(s) 225, 237, 457, 763, 1069, 1164
SspMI CTAG 4 cut(s) 77, 660, 680, 1282
StyD4I CCNGG 3 cut(s) 240, 945, 1035
TaaI ACNGT 2 cut(s) 505, 1198
TaiI ACGT 1 cut(s) 223
TatI WGTACW 1 cut(s) 365
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 3 cut(s) 350, 743, 782
Tru1I TTAA 5 cut(s) 83, 800, 866, 969, 1268
Tru9I TTAA 5 cut(s) 83, 800, 866, 969, 1268
TscAI CASTG 4 cut(s) 207, 569, 753, 1201
TseFI GTSAC 2 cut(s) 700, 854
TseI GCWGC 6 cut(s) 277, 305, 476, 1100, 1112, 1115
Tsp45I GTSAC 2 cut(s) 700, 854
TspDTI ATGAA 2 cut(s) 459, 1254
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 4 cut(s) 207, 569, 753, 1201
Tth111I GACNNNGTC 1 cut(s) 1052
VpaK11BI GGWCC 1 cut(s) 356
XagI CCTNNNNNAGG 1 cut(s) 833
XapI RAATTY 1 cut(s) 293
XbaI TCTAGA 1 cut(s) 659
XceI RCATGY 3 cut(s) 284, 496, 603
XmiI GTMKAC 2 cut(s) 1047, 1139
XmnI GAANNNNTTC 1 cut(s) 924
XspI CTAG 4 cut(s) 77, 660, 680, 1282
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.