FvH4_6g15620

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016880
Physical Location & Seq
Forward (+)
9718587 .. 9719770
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15620.t1

Sequence Viewer

Length: 651 bp
ATGTTTGCGTTGCCGGAGTGCCGATGGCCATCTCGACATAAAAGATACCAGAGTTGGAGGGGTAGATTCCCGATCAAGTATTCGAACAAACCCATTACCAACTTGGCGCTAAGAACTCCCCGTACAATCTACCCCTCCAACTCTGGTATCTTTTATGTCGAGATGGCCATCGGCACTCCGGCAACGCAAACATACACAGCTTTCGATACCTTGAGCCCCTTTACCTGGCTTCAGGTTCCCGAGTGCCAGCATTGCTTTTCGGTAGTGAGGGGAGCGTCCTTCGACCCCCAAAACTCCTCTTCATTTACCGTAGTAAGCTCTGTCGACCCGATTTGCTCACCTTCGGATCCATTCCTCACTCCGTCGTCCAACGGCTCCTGCCTCTACGACGGTGGAGTTAGCTCGGGCTTTCTCGGCACGGAAGTTTTATCCTACTCATTTGACGTTGCTGCTACTCTCAAGATCTCTTTTGGTTGCGGGATATACAATTCTCTAGTTTTCGGTGGTGACGAACAATCAGAGAATCCAATCTCCGGTGTTATATATGGGACTAGGTCCCGGTCTTCCCTTAAGCCTTCTGAGCCAACTCCGGCCGGTCGTCATGGACCGGTTTGCATACTGCATTCCATCTCTGTTGCGAATAGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

217

Amino Acids

23.53

Weight (kDa)

8.48

Isoelectric Point (pI)

62.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 51 - 163 1.6e-13 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AciI CCGC 1 cut(s) 477
AclWI GGATC 2 cut(s) 341, 354
AcoI YGGCCR 3 cut(s) 26, 165, 591
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 1 cut(s) 124
AfiI CCNNNNNNNGG 2 cut(s) 225, 533
AflII CTTAAG 1 cut(s) 569
AgeI ACCGGT 1 cut(s) 607
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 4 cut(s) 200, 318, 402, 648
AluI AGCT 4 cut(s) 200, 318, 402, 648
AlwI GGATC 2 cut(s) 341, 354
Ama87I CYCGRG 2 cut(s) 239, 403
AoxI GGCC 3 cut(s) 26, 165, 591
ApeKI GCWGC 1 cut(s) 449
AsiGI ACCGGT 1 cut(s) 607
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 2 cut(s) 555, 605
AsuC2I CCSGG 1 cut(s) 559
AsuHPI GGTGA 2 cut(s) 330, 518
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 2 cut(s) 239, 403
AvaII GGWCC 2 cut(s) 555, 605
BaeI ACNNNNGTAYC 4 cut(s) 37, 70, 130, 163
BalI TGGCCA 2 cut(s) 28, 167
BamHI GGATCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 555
BbvI GCAGC 1 cut(s) 436
BccI CCATC 5 cut(s) 18, 37, 157, 176, 635
BceAI ACGGC 1 cut(s) 388
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 1 cut(s) 559
BfaI CTAG 2 cut(s) 494, 552
BfoI RGCGCY 1 cut(s) 110
BfrI CTTAAG 1 cut(s) 569
BglII AGATCT 1 cut(s) 462
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
Bme1390I CCNGG 2 cut(s) 226, 559
Bme18I GGWCC 2 cut(s) 555, 605
BmeT110I CYCGRG 2 cut(s) 239, 403
BmgT120I GGNCC 2 cut(s) 555, 605
BmiI GGNNCC 4 cut(s) 237, 348, 376, 557
BmrFI CCNGG 2 cut(s) 226, 559
BpiI GAAGAC 1 cut(s) 555
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 2 cut(s) 232, 443
BpuMI CCSGG 1 cut(s) 559
BsaBI GATNNNNATC 2 cut(s) 28, 167
BsaWI WCCGGW 2 cut(s) 533, 607
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 533
Bse118I RCCGGY 2 cut(s) 593, 607
Bse3DI GCAATG 1 cut(s) 250
Bse8I GATNNNNATC 2 cut(s) 28, 167
BseBI CCWGG 1 cut(s) 226
BseJI GATNNNNATC 2 cut(s) 28, 167
BseLI CCNNNNNNNGG 2 cut(s) 225, 533
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 570
BseRI GAGGAG 1 cut(s) 286
BseX3I CGGCCG 1 cut(s) 591
BseXI GCAGC 1 cut(s) 436
Bsh1285I CGRYCG 2 cut(s) 594, 598
BshFI GGCC 3 cut(s) 28, 167, 593
BshTI ACCGGT 1 cut(s) 607
BsiEI CGRYCG 2 cut(s) 594, 598
BsiHKCI CYCGRG 2 cut(s) 239, 403
BsiSI CCGG 7 cut(s) 14, 179, 534, 559, 590, 594, 608
BslFI GGGAC 2 cut(s) 541, 562
BslI CCNNNNNNNGG 2 cut(s) 225, 533
BsmFI GGGAC 2 cut(s) 541, 562
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 3 cut(s) 28, 167, 593
BsoBI CYCGRG 2 cut(s) 239, 403
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 3 cut(s) 72, 346, 462
BspACI CCGC 1 cut(s) 477
BspANI GGCC 3 cut(s) 28, 167, 593
BspCNI CTCAG 1 cut(s) 571
BspLI GGNNCC 4 cut(s) 237, 348, 376, 557
BspPI GGATC 2 cut(s) 341, 354
BspT104I TTCGAA 1 cut(s) 83
BspTI CTTAAG 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 250
BsrFI RCCGGY 2 cut(s) 593, 607
BssAI RCCGGY 2 cut(s) 593, 607
BssMI GATC 3 cut(s) 72, 346, 462
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 2 cut(s) 310, 392
Bst6I CTCTTC 1 cut(s) 304
BstAFI CTTAAG 1 cut(s) 569
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 110, 579
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 3 cut(s) 75, 349, 465
BstMBI GATC 3 cut(s) 72, 346, 462
BstMCI CGRYCG 2 cut(s) 594, 598
BstMWI GCNNNNNNNGC 3 cut(s) 252, 414, 580
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 224, 557
BstV1I GCAGC 1 cut(s) 436
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 2 cut(s) 346, 462
BstYI RGATCY 2 cut(s) 346, 462
BstZI CGGCCG 1 cut(s) 591
BsuRI GGCC 3 cut(s) 28, 167, 593
Cac8I GCNNGC 1 cut(s) 248
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 2 cut(s) 593, 607
Cfr13I GGNCC 2 cut(s) 555, 605
CseI GACGC 1 cut(s) 264
Csp6I GTAC 1 cut(s) 123
CspAI ACCGGT 1 cut(s) 607
CviAII CATG 1 cut(s) 602
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 2 cut(s) 110, 579
DpnI GATC 3 cut(s) 74, 348, 464
DpnII GATC 3 cut(s) 72, 346, 462
EaeI YGGCCR 3 cut(s) 26, 165, 591
EagI CGGCCG 1 cut(s) 591
Eam1104I CTCTTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 304
EclXI CGGCCG 1 cut(s) 591
Eco24I GRGCYC 1 cut(s) 218
Eco47I GGWCC 2 cut(s) 555, 605
Eco52I CGGCCG 1 cut(s) 591
Eco57I CTGAAG 1 cut(s) 215
Eco88I CYCGRG 2 cut(s) 239, 403
EcoO109I RGGNCCY 1 cut(s) 555
EcoRII CCWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 218
FaeI CATG 1 cut(s) 605
FaiI YATR 9 cut(s) 39, 156, 193, 484, 542, 544, 546, 603, 617
FaqI GGGAC 2 cut(s) 541, 562
FatI CATG 1 cut(s) 601
FauI CCCGC 1 cut(s) 470
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 1 cut(s) 450
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 450
FspBI CTAG 2 cut(s) 494, 552
GlaI GCGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 450
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 3 cut(s) 28, 167, 593
HapII CCGG 7 cut(s) 14, 179, 534, 559, 590, 594, 608
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 109
Hin1II CATG 1 cut(s) 605
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 2 cut(s) 66, 523
HpaII CCGG 7 cut(s) 14, 179, 534, 559, 590, 594, 608
HphI GGTGA 2 cut(s) 330, 518
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 3 cut(s) 346, 520, 580
Hpy188III TCNNGA 5 cut(s) 33, 70, 160, 239, 460
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 2 cut(s) 367, 392
HpyAV CCTTC 3 cut(s) 289, 351, 585
HpyCH4III ACNGT 2 cut(s) 310, 392
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 2 cut(s) 615, 622
HpyF10VI GCNNNNNNNGC 3 cut(s) 252, 414, 580
HpyF3I CTNAG 2 cut(s) 110, 579
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 1 cut(s) 605
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 3 cut(s) 72, 346, 462
LmnI GCTCC 2 cut(s) 272, 380
Lsp1109I GCAGC 1 cut(s) 436
MaeI CTAG 2 cut(s) 494, 552
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 506
MalI GATC 3 cut(s) 74, 348, 464
MboI GATC 3 cut(s) 72, 346, 462
MboII GAAGA 2 cut(s) 291, 555
MflI RGATCY 2 cut(s) 346, 462
MhlI GDGCHC 1 cut(s) 218
MlsI TGGCCA 2 cut(s) 28, 167
MluCI AATT 1 cut(s) 487
MluNI TGGCCA 2 cut(s) 28, 167
MmeI TCCRAC 3 cut(s) 35, 162, 393
MnlI CCTC 6 cut(s) 51, 145, 261, 307, 365, 392
Mox20I TGGCCA 2 cut(s) 28, 167
MscI TGGCCA 2 cut(s) 28, 167
MseI TTAA 1 cut(s) 570
Msp20I TGGCCA 2 cut(s) 28, 167
MspCI CTTAAG 1 cut(s) 569
MspI CCGG 7 cut(s) 14, 179, 534, 559, 590, 594, 608
MspR9I CCNGG 2 cut(s) 226, 559
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 3 cut(s) 252, 414, 580
NciI CCSGG 1 cut(s) 559
NdeII GATC 3 cut(s) 72, 346, 462
NlaIII CATG 1 cut(s) 605
NlaIV GGNNCC 4 cut(s) 237, 348, 376, 557
NmeAIII GCCGAG 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 506
NspV TTCGAA 1 cut(s) 83
PcsI WCGNNNNNNNCGW 1 cut(s) 507
PctI GAATGC 1 cut(s) 622
PfeI GAWTC 2 cut(s) 66, 523
PflFI GACNNNGTC 1 cut(s) 553
PinAI ACCGGT 1 cut(s) 607
PkrI GCNGC 1 cut(s) 451
PpuMI RGGWCCY 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 555
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 4 cut(s) 237, 348, 376, 557
PspPI GGNCC 2 cut(s) 555, 605
PspPPI RGGWCCY 1 cut(s) 555
PsrI GAACNNNNNNTAC 2 cut(s) 106, 138
PsuI RGATCY 2 cut(s) 346, 462
PsyI GACNNNGTC 1 cut(s) 553
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SalI GTCGAC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 3 cut(s) 72, 346, 462
Sau96I GGNCC 2 cut(s) 555, 605
ScrFI CCNGG 2 cut(s) 226, 559
SduI GDGCHC 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 2 cut(s) 555, 605
SmlI CTYRAG 3 cut(s) 211, 458, 569
SmoI CTYRAG 3 cut(s) 211, 458, 569
Sse9I AATT 1 cut(s) 487
SsiI CCGC 1 cut(s) 477
SspMI CTAG 2 cut(s) 494, 552
StyD4I CCNGG 2 cut(s) 224, 557
TaaI ACNGT 2 cut(s) 310, 392
TaiI ACGT 1 cut(s) 447
TaqI TCGA 6 cut(s) 34, 83, 159, 204, 282, 324
TasI AATT 1 cut(s) 487
TfiI GAWTC 2 cut(s) 66, 523
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 1 cut(s) 291
TspGWI ACGGA 2 cut(s) 351, 434
Tth111I GACNNNGTC 1 cut(s) 553
Vha464I CTTAAG 1 cut(s) 569
VpaK11BI GGWCC 2 cut(s) 555, 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 2 cut(s) 494, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.