Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016880

Physical Location & Seq

Genomic Coordinates Reverse (-)

34618875 .. 34620451

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCCCGGCACCACGTCAAATGGTGACCCAAGTCACCAAAATTGTGAAATTGTTCCTTCCACCGGGCTTGGGGCAAGAGAACAGTGGAAGACCCAGGACAGCAGCTCGGTCACCATGTTGCCCGAGCTCGTGACCCGTGCCTCCACCGTGGCCCAAAGAAGGGAGAGGAACAGAAGAGTTTTGCATGGCACAGTGCGAGCCGTGCTTTCTGTGGACAAGGGAGGGTCCTTCGACCCCAACCACTCCTCTACGTTTACATTGTTAAGCTCGGCGACCCGATGTGCTGTCCTCCCCTCGGCATTCCATTGTCCAAGGGCTCGTGCGACTACAACCTTGGATATAGCAAGGGCTTTTTCGGCACGGACATACTCTCTTACTCGGTTTCTTCGTGCGTGTGGTTATGTAGTTGATGATGCTTTTGCTTCCGAGGTTTCACTTGACGTGTCTTCCGGTCGCGGCTTTTTCAATAAATTGGCTTTCGGTGGTGACGACGAATCGGGGAATCCTATCTCCGGTGTGATGGGATTGGGTCTCGGTCATCCTTCCGGTCTCCTTACCCAACTCCGGCCGATCATGATGGGCCGGTTTCCTCTTGCATTCCACCTCTGTTTCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Asp TAXi_C TAXi_N

Protein Analysis

205

Amino Acids

22.05

Weight (kDa)

9.26

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15620 FvH4_6g15621
rosa_chinensis	RchiOBHm_Chr3g0469211
rosa_laevigata	RLG00000024365
rosa_roxburghii	Rroxscaffold_6G00392140 Rroxscaffold_6G00412030 Rroxscaffold_6G00412090 Rroxscaffold_6G00412100
rosa_rugosa	Rorug03G0100200
rosa_samantha	Rh3AG149500 Rh3BG172800 Rh3CG164200 Rh3DG202800
rosa_wichuraiana	Rw3G014110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	8
AccII	CGCG	1 cut(s)	456
AciI	CCGC	1 cut(s)	456
AcoI	YGGCCR	1 cut(s)	566
AfiI	CCNNNNNNNGG	7 cut(s)	62, 69, 159, 160, 295, 512, 564
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	1 cut(s)	466
AjiI	CACGTC	2 cut(s)	15, 442
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	3 cut(s)	105, 127, 267
AluI	AGCT	3 cut(s)	105, 127, 267
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	2 cut(s)	536, 554
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	3 cut(s)	150, 566, 580
ApeKI	GCWGC	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	3 cut(s)	151, 225, 580
AsuC2I	CCSGG	2 cut(s)	6, 64
AsuHPI	GGTGA	4 cut(s)	26, 35, 103, 497
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	8
BanII	GRGCYC	2 cut(s)	129, 319
BauI	CACGAG	2 cut(s)	128, 318
BbsI	GAAGAC	2 cut(s)	95, 438
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	2 cut(s)	514, 571
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	95
BcnI	CCSGG	2 cut(s)	6, 64
BcoDI	GTCTC	2 cut(s)	536, 554
BisI	GCNGC	2 cut(s)	103, 457
BlsI	GCNGC	2 cut(s)	104, 458
Bme1390I	CCNGG	3 cut(s)	6, 64, 95
Bme18I	GGWCC	1 cut(s)	225
BmeT110I	CYCGRG	1 cut(s)	122
BmgBI	CACGTC	2 cut(s)	15, 442
BmgT120I	GGNCC	3 cut(s)	151, 225, 580
BmiI	GGNNCC	2 cut(s)	10, 226
BmrFI	CCNGG	3 cut(s)	6, 64, 95
BmsI	GCATC	1 cut(s)	403
BoxI	GACNNNNGTC	1 cut(s)	30
BpiI	GAAGAC	2 cut(s)	95, 438
BpuMI	CCSGG	2 cut(s)	6, 64
BsaI	GGTCTC	2 cut(s)	536, 554
BsaJI	CCNNGG	6 cut(s)	93, 147, 294, 311, 333, 426
BsaWI	WCCGGW	3 cut(s)	449, 512, 545
Bsc4I	CCNNNNNNNGG	7 cut(s)	62, 69, 159, 160, 295, 512, 564
Bse118I	RCCGGY	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	6 cut(s)	93, 147, 294, 311, 333, 426
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	7 cut(s)	62, 69, 159, 160, 295, 512, 564
BseRI	GAGGAG	1 cut(s)	235
BseX3I	CGGCCG	1 cut(s)	566
BseXI	GCAGC	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	456
Bsh1285I	CGRYCG	2 cut(s)	454, 569
BshFI	GGCC	3 cut(s)	152, 568, 582
BshNI	GGYRCC	1 cut(s)	8
BsiEI	CGRYCG	2 cut(s)	454, 569
BsiHKAI	GWGCWC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	7 cut(s)	6, 63, 450, 513, 546, 565, 583
BslI	CCNNNNNNNGG	7 cut(s)	62, 69, 159, 160, 295, 512, 564
BsmAI	GTCTC	2 cut(s)	536, 554
BsmI	GAATGC	2 cut(s)	299, 596
BsnI	GGCC	3 cut(s)	152, 568, 582
Bso31I	GGTCTC	2 cut(s)	536, 554
BsoBI	CYCGRG	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	129, 319
Bsp143I	GATC	1 cut(s)	570
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	3 cut(s)	152, 568, 582
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	2 cut(s)	10, 226
BspT107I	GGYRCC	1 cut(s)	8
BspTNI	GGTCTC	2 cut(s)	536, 554
BsrFI	RCCGGY	1 cut(s)	582
BssAI	RCCGGY	1 cut(s)	582
BssECI	CCNNGG	6 cut(s)	93, 147, 294, 311, 333, 426
BssMI	GATC	1 cut(s)	570
BssSI	CACGAG	2 cut(s)	128, 318
BssT1I	CCWWGG	2 cut(s)	311, 333
Bst2BI	CACGAG	2 cut(s)	128, 318
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	3 cut(s)	84, 148, 193
Bst6I	CTCTTC	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	147
BstEII	GGTNACC	2 cut(s)	23, 109
BstF5I	GGATG	1 cut(s)	538
BstFNI	CGCG	1 cut(s)	456
BstKTI	GATC	1 cut(s)	573
BstMAI	GTCTC	2 cut(s)	536, 554
BstMBI	GATC	1 cut(s)	570
BstMCI	CGRYCG	2 cut(s)	454, 569
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 356
BstNI	CCWGG	1 cut(s)	95
BstPAI	GACNNNNGTC	1 cut(s)	30
BstPI	GGTNACC	2 cut(s)	23, 109
BstSCI	CCNGG	3 cut(s)	4, 62, 93
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	1 cut(s)	114
BstV2I	GAAGAC	2 cut(s)	95, 438
BstZI	CGGCCG	1 cut(s)	566
BsuRI	GGCC	3 cut(s)	152, 568, 582
BtgI	CCRYGG	1 cut(s)	147
BtrI	CACGTC	2 cut(s)	15, 442
BtsCI	GGATG	1 cut(s)	538
BtsIMutI	CAGTG	2 cut(s)	89, 198
Cac8I	GCNNGC	1 cut(s)	198
CciI	TCATGA	1 cut(s)	573
Cfr10I	RCCGGY	1 cut(s)	582
Cfr13I	GGNCC	3 cut(s)	151, 225, 580
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	3 cut(s)	115, 185, 574
DpnI	GATC	1 cut(s)	572
DpnII	GATC	1 cut(s)	570
EaeI	YGGCCR	1 cut(s)	566
EagI	CGGCCG	1 cut(s)	566
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Ecl136II	GAGCTC	1 cut(s)	127
EclXI	CGGCCG	1 cut(s)	566
Eco130I	CCWWGG	2 cut(s)	311, 333
Eco24I	GRGCYC	2 cut(s)	129, 319
Eco31I	GGTCTC	2 cut(s)	536, 554
Eco47I	GGWCC	1 cut(s)	225
Eco52I	CGGCCG	1 cut(s)	566
Eco53kI	GAGCTC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	122
Eco91I	GGTNACC	2 cut(s)	23, 109
EcoICRI	GAGCTC	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	225
EcoO65I	GGTNACC	2 cut(s)	23, 109
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	2 cut(s)	311, 333
EcoT38I	GRGCYC	2 cut(s)	129, 319
ErhI	CCWWGG	2 cut(s)	311, 333
FaeI	CATG	3 cut(s)	118, 188, 577
FaiI	YATR	6 cut(s)	116, 186, 341, 367, 402, 575
FatI	CATG	3 cut(s)	114, 184, 573
Fnu4HI	GCNGC	2 cut(s)	103, 457
FokI	GGATG	1 cut(s)	525
FriOI	GRGCYC	2 cut(s)	129, 319
Fsp4HI	GCNGC	2 cut(s)	103, 457
GluI	GCNGC	2 cut(s)	103, 457
HaeIII	GGCC	3 cut(s)	152, 568, 582
HapII	CCGG	7 cut(s)	6, 63, 450, 513, 546, 565, 583
Hin1II	CATG	3 cut(s)	118, 188, 577
HinfI	GANTC	2 cut(s)	494, 502
HpaII	CCGG	7 cut(s)	6, 63, 450, 513, 546, 565, 583
HphI	GGTGA	4 cut(s)	26, 35, 103, 497
Hpy166II	GTNNAC	2 cut(s)	214, 255
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	2 cut(s)	130, 574
Hpy8I	GTNNAC	2 cut(s)	214, 255
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	4 cut(s)	66, 153, 238, 552
HpyCH4III	ACNGT	3 cut(s)	84, 148, 193
HpyCH4IV	ACGT	3 cut(s)	14, 251, 441
HpyCH4V	TGCA	2 cut(s)	184, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 356
HpySE526I	ACGT	3 cut(s)	14, 251, 441
Hsp92II	CATG	3 cut(s)	118, 188, 577
Kzo9I	GATC	1 cut(s)	570
LpnPI	CCDG	9 cut(s)	19, 76, 80, 107, 463, 526, 559, 578, 596
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	1 cut(s)	403
MaeII	ACGT	3 cut(s)	14, 251, 441
MaeIII	GTNAC	5 cut(s)	23, 32, 109, 130, 485
MalI	GATC	1 cut(s)	572
MboI	GATC	1 cut(s)	570
MboII	GAAGA	4 cut(s)	100, 186, 377, 438
MhlI	GDGCHC	2 cut(s)	129, 319
MluCI	AATT	3 cut(s)	40, 48, 470
MnlI	CCTC	9 cut(s)	151, 159, 215, 256, 299, 304, 421, 600, 614
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	1 cut(s)	263
MspI	CCGG	7 cut(s)	6, 63, 450, 513, 546, 565, 583
MspR9I	CCNGG	3 cut(s)	6, 64, 95
Mva1269I	GAATGC	2 cut(s)	299, 596
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	202, 356
NciI	CCSGG	2 cut(s)	6, 64
NdeII	GATC	1 cut(s)	570
NlaIII	CATG	3 cut(s)	118, 188, 577
NlaIV	GGNNCC	2 cut(s)	10, 226
NmeAIII	GCCGAG	2 cut(s)	248, 275
NmuCI	GTSAC	5 cut(s)	23, 32, 109, 130, 485
PagI	TCATGA	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	2 cut(s)	385, 486
PctI	GAATGC	2 cut(s)	299, 596
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	494, 502
PkrI	GCNGC	2 cut(s)	104, 458
PpuMI	RGGWCCY	1 cut(s)	225
PshAI	GACNNNNGTC	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	93
PspEI	GGTNACC	2 cut(s)	23, 109
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	10, 226
PspPI	GGNCC	3 cut(s)	151, 225, 580
PspPPI	RGGWCCY	1 cut(s)	225
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	2 cut(s)	103, 457
Sau3AI	GATC	1 cut(s)	570
Sau96I	GGNCC	3 cut(s)	151, 225, 580
ScrFI	CCNGG	3 cut(s)	6, 64, 95
SduI	GDGCHC	2 cut(s)	129, 319
SetI	ASST	9 cut(s)	17, 107, 129, 254, 269, 335, 432, 444, 606
SfaNI	GCATC	1 cut(s)	403
SinI	GGWCC	1 cut(s)	225
Sse9I	AATT	3 cut(s)	40, 48, 470
SsiI	CCGC	1 cut(s)	456
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	3 cut(s)	4, 62, 93
StyI	CCWWGG	2 cut(s)	311, 333
TaaI	ACNGT	3 cut(s)	84, 148, 193
TaiI	ACGT	3 cut(s)	17, 254, 444
TaqI	TCGA	1 cut(s)	231
TaqII	GACCGA	2 cut(s)	97, 524
TasI	AATT	3 cut(s)	40, 48, 470
TauI	GCSGC	1 cut(s)	459
TfiI	GAWTC	2 cut(s)	494, 502
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	2 cut(s)	89, 198
TseFI	GTSAC	5 cut(s)	23, 32, 109, 130, 485
TseI	GCWGC	1 cut(s)	102
Tsp45I	GTSAC	5 cut(s)	23, 32, 109, 130, 485
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	2 cut(s)	89, 198
VpaK11BI	GGWCC	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.