Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016880

Physical Location & Seq

Genomic Coordinates Reverse (-)

34678189 .. 34696372

Gene Structure 18184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGACATACTCTCATACTACGTTGACGAGGCTGTTGCTTCCGAGGTTTCACTTAACGTCTCTTTTGGTTGCGGCTTATTCAATCAATTGGCTTTCGGTGGTGACGACGAATCGGGGAATCCCATCTCCGGTGTGATGGGACTAGGTGTCGGTCATCCTTCCGGTCTCCTTACCCAACTCCGGCCGGTCATGATGGATCGGTTTTCCTACTGCATTCCATCTCTGTTTCCAATAGAAGGTGATCTTCGGGACGGCAAGGGCGCGACCTTGGACTTCGGTCTGAAGCTGTCCTTACGGGCGGTACGAGTACCGGACTCCTCGAACAACCTCACCTGCTACACCACCACTACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Asp TAXi_C TAXi_N

Protein Analysis

118

Amino Acids

12.57

Weight (kDa)

4.4

Isoelectric Point (pI)

27.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15620 FvH4_6g15621
rosa_chinensis	RchiOBHm_Chr3g0469211
rosa_laevigata	RLG00000024365
rosa_roxburghii	Rroxscaffold_6G00392140 Rroxscaffold_6G00412030 Rroxscaffold_6G00412090 Rroxscaffold_6G00412100
rosa_rugosa	Rorug03G0100200
rosa_samantha	Rh3AG149500 Rh3BG172800 Rh3CG164200 Rh3DG202800
rosa_wichuraiana	Rw3G014110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	341
AccII	CGCG	1 cut(s)	263
AciI	CCGC	2 cut(s)	72, 299
AclWI	GGATC	1 cut(s)	204
AcoI	YGGCCR	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	2 cut(s)	303, 309
AfiI	CCNNNNNNNGG	3 cut(s)	128, 180, 236
AgsI	TTSAA	1 cut(s)	82
AhdI	GACNNNNNGTC	1 cut(s)	146
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw26I	GTCTC	2 cut(s)	64, 170
AlwI	GGATC	1 cut(s)	204
AoxI	GGCC	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	263
AsuHPI	GGTGA	3 cut(s)	113, 251, 322
BccI	CCATC	4 cut(s)	130, 131, 187, 226
BceAI	ACGGC	1 cut(s)	268
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BcoDI	GTCTC	2 cut(s)	64, 170
BfaI	CTAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	341
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
BmeRI	GACNNNNNGTC	1 cut(s)	146
BoxI	GACNNNNGTC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	42, 267
BsaWI	WCCGGW	3 cut(s)	128, 161, 310
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 180, 236
Bse118I	RCCGGY	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	42, 267
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	3 cut(s)	128, 180, 236
BseRI	GAGGAG	1 cut(s)	307
BseX3I	CGGCCG	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	263
Bsh1285I	CGRYCG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	184
BsiEI	CGRYCG	1 cut(s)	185
BsiSI	CCGG	5 cut(s)	129, 162, 181, 185, 311
BslFI	GGGAC	2 cut(s)	153, 263
BslI	CCNNNNNNNGG	3 cut(s)	128, 180, 236
BsmAI	GTCTC	2 cut(s)	64, 170
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	2 cut(s)	153, 263
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	184
Bso31I	GGTCTC	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	196, 241
BspACI	CCGC	2 cut(s)	72, 299
BspANI	GGCC	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	263
BspHI	TCATGA	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	42, 267
BssMI	GATC	2 cut(s)	196, 241
BssT1I	CCWWGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	2 cut(s)	199, 244
BstMAI	GTCTC	2 cut(s)	64, 170
BstMBI	GATC	2 cut(s)	196, 241
BstMCI	CGRYCG	1 cut(s)	185
BstPAI	GACNNNNGTC	1 cut(s)	276
BstUI	CGCG	1 cut(s)	263
BstZI	CGGCCG	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	341
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	302, 308
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	5 cut(s)	32, 75, 92, 184, 286
CviKI_1	RGCY	5 cut(s)	32, 75, 92, 184, 286
CviQI	GTAC	2 cut(s)	302, 308
DpnI	GATC	2 cut(s)	198, 243
DpnII	GATC	2 cut(s)	196, 241
DriI	GACNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	182
EagI	CGGCCG	1 cut(s)	182
Eam1105I	GACNNNNNGTC	1 cut(s)	146
EclXI	CGGCCG	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	170
Eco52I	CGGCCG	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	1 cut(s)	193
FaiI	YATR	3 cut(s)	8, 16, 191
FalI	AAGNNNNNCTT	4 cut(s)	228, 260, 275, 307
FaqI	GGGAC	2 cut(s)	153, 263
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	5 cut(s)	129, 162, 181, 185, 311
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	3 cut(s)	110, 118, 314
HpaII	CCGG	5 cut(s)	129, 162, 181, 185, 311
HphI	GGTGA	3 cut(s)	113, 251, 322
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	43, 282
Hpy188III	TCNNGA	2 cut(s)	190, 248
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	168, 230
HpyCH4IV	ACGT	2 cut(s)	21, 57
HpyCH4V	TGCA	1 cut(s)	213
HpySE526I	ACGT	2 cut(s)	21, 57
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	196, 241
LpnPI	CCDG	6 cut(s)	142, 175, 194, 198, 324, 346
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	2 cut(s)	21, 57
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	2 cut(s)	198, 243
MboI	GATC	2 cut(s)	196, 241
MboII	GAAGA	1 cut(s)	236
MfeI	CAATTG	1 cut(s)	86
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	4 cut(s)	22, 37, 328, 338
MseI	TTAA	1 cut(s)	54
MspI	CCGG	5 cut(s)	129, 162, 181, 185, 311
MunI	CAATTG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	213
MvnI	CGCG	1 cut(s)	263
NdeII	GATC	2 cut(s)	196, 241
NlaIII	CATG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	101
PagI	TCATGA	1 cut(s)	189
PaqCI	CACCTGC	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 301
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	110, 118
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PshAI	GACNNNNGTC	1 cut(s)	276
RsaI	GTAC	2 cut(s)	303, 309
RsaNI	GTAC	2 cut(s)	302, 308
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	2 cut(s)	196, 241
SchI	GAGTC	1 cut(s)	308
SetI	ASST	9 cut(s)	24, 48, 60, 148, 241, 269, 288, 330, 335
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	2 cut(s)	72, 299
SspMI	CTAG	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	267
TaiI	ACGT	2 cut(s)	24, 60
TaqI	TCGA	1 cut(s)	320
TaqII	GACCGA	2 cut(s)	140, 266
TasI	AATT	1 cut(s)	86
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	2 cut(s)	110, 118
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	101
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.