Rroxscaffold_6G00412090

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016880
Physical Location & Seq
Reverse (-)
34677675 .. 34677971
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412090.1

Sequence Viewer

Length: 297 bp
ATGGAGGACGAACCGAATTTCGAGCGGGGACCGCTAGTTGTGCTGCACTTGGAGGGTGGAGCCTCTCTGGAGCTGCAAAATGCCTTCGAGTCGTTCGAGGATGAGGGCTGTCTCACCATCATCTCTGTTGATGATGATGGGAATGTGCCAAACCTTTTAGGGGTGCACAACCGGATGACTTATAGGTTCCTTTTCGAACTTGACAAATCCAAGCTGTCCTTCTCTCCCATATGTGTTGAAGCAAAGAGTGAATTTGATCTCGTGATCATCTATGGTCTTACATTATGCATGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

98

Amino Acids

11.0

Weight (kDa)

4.21

Isoelectric Point (pI)

28.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 25
AciI CCGC 2 cut(s) 25, 32
AcsI RAATTY 2 cut(s) 16, 251
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 1 cut(s) 239
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 2 cut(s) 73, 214
AluI AGCT 2 cut(s) 73, 214
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 116
Alw44I GTGCAC 1 cut(s) 164
ApaLI GTGCAC 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 43, 73
ApoI RAATTY 2 cut(s) 16, 251
AspS9I GGNCC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 106
AsuII TTCGAA 1 cut(s) 195
AvaII GGWCC 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 168
BauI CACGAG 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 30, 60
BccI CCATC 2 cut(s) 125, 131
BclI TGATCA 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 35
BisI GCNGC 2 cut(s) 44, 74
BlsI GCNGC 2 cut(s) 45, 75
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 3 cut(s) 30, 61, 188
BpmI CTGGAG 1 cut(s) 89
Bpu14I TTCGAA 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 106, 180
BseLI CCNNNNNNNGG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 2 cut(s) 30, 60
BsgI GTGCAG 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 42
Bsp119I TTCGAA 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 256, 264
BspACI CCGC 2 cut(s) 25, 32
BspLI GGNNCC 3 cut(s) 30, 61, 188
BspT104I TTCGAA 1 cut(s) 195
BsrBI CCGCTC 1 cut(s) 25
BssMI GATC 2 cut(s) 256, 264
BssSI CACGAG 1 cut(s) 260
Bst2BI CACGAG 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 195
BstF5I GGATG 2 cut(s) 106, 180
BstKTI GATC 2 cut(s) 259, 267
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 256, 264
BstMWI GCNNNNNNNGC 2 cut(s) 31, 40
BstNSI RCATGY 1 cut(s) 292
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 30, 60
BtsCI GGATG 2 cut(s) 106, 180
Cfr13I GGNCC 1 cut(s) 29
CviAII CATG 1 cut(s) 289
CviJI RGCY 4 cut(s) 62, 73, 108, 214
CviKI_1 RGCY 4 cut(s) 62, 73, 108, 214
DpnI GATC 2 cut(s) 258, 266
DpnII GATC 2 cut(s) 256, 264
Eco47I GGWCC 1 cut(s) 29
EcoT22I ATGCAT 1 cut(s) 290
FaeI CATG 1 cut(s) 292
FaiI YATR 7 cut(s) 183, 230, 232, 273, 286, 290, 295
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 1 cut(s) 42
FatI CATG 1 cut(s) 288
FauI CCCGC 1 cut(s) 18
FauNDI CATATG 1 cut(s) 230
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 44, 74
FokI GGATG 2 cut(s) 113, 187
Fsp4HI GCNGC 2 cut(s) 44, 74
FspBI CTAG 1 cut(s) 35
GluI GCNGC 2 cut(s) 44, 74
GsuI CTGGAG 1 cut(s) 89
HapII CCGG 1 cut(s) 172
Hin1II CATG 1 cut(s) 292
HinfI GANTC 1 cut(s) 89
HpaII CCGG 1 cut(s) 172
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 68, 262
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 2 cut(s) 94, 229
HpyCH4V TGCA 4 cut(s) 46, 76, 166, 288
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 40
Hsp92II CATG 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 2 cut(s) 256, 264
LmnI GCTCC 2 cut(s) 59, 70
LpnPI CCDG 2 cut(s) 53, 185
Lsp1109I GCAGC 2 cut(s) 30, 60
MaeI CTAG 1 cut(s) 35
MalI GATC 2 cut(s) 258, 266
MbiI CCGCTC 1 cut(s) 25
MboI GATC 2 cut(s) 256, 264
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 2 cut(s) 16, 251
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 4 cut(s) 46, 73, 91, 97
Mph1103I ATGCAT 1 cut(s) 290
MspI CCGG 1 cut(s) 172
MwoI GCNNNNNNNGC 2 cut(s) 31, 40
NdeI CATATG 1 cut(s) 230
NdeII GATC 2 cut(s) 256, 264
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 3 cut(s) 30, 61, 188
NsiI ATGCAT 1 cut(s) 290
NspI RCATGY 1 cut(s) 292
NspV TTCGAA 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PkrI GCNGC 2 cut(s) 45, 75
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PspN4I GGNNCC 3 cut(s) 30, 61, 188
PspPI GGNCC 1 cut(s) 29
SatI GCNGC 2 cut(s) 44, 74
Sau3AI GATC 2 cut(s) 256, 264
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 168
SetI ASST 4 cut(s) 75, 156, 188, 216
SfuI TTCGAA 1 cut(s) 195
SinI GGWCC 1 cut(s) 29
Sse9I AATT 2 cut(s) 16, 251
SsiI CCGC 2 cut(s) 25, 32
SspMI CTAG 1 cut(s) 35
TaqI TCGA 4 cut(s) 21, 87, 96, 195
TasI AATT 2 cut(s) 16, 251
TseI GCWGC 2 cut(s) 43, 73
VneI GTGCAC 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 29
XapI RAATTY 2 cut(s) 16, 251
XceI RCATGY 1 cut(s) 292
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.