Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0016880

Physical Location & Seq

Genomic Coordinates Reverse (-)

35159311 .. 35160809

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTCAACGGCGTACGGGGATCTCTGCCGGCGGAAGGACTTGCTTTCGGCACTGACTCGATTTCTCCCTACGCTCCAATGTTCAAGCCGTGTTTCGAGGAGTTGAGGGATGTGGTCGTCAAGCATTTCAAGGACAAGTATGGGATGGCGCCACTGAATCAAACGCAGTCGGGTTTGGAGCTGTGTTATGAGCTTCAAAAATATGAAGGACGAACCGAATTTCTGAGCAGGGGACCGGCAGTTGTGCTGCACTTGGAGGTTGGAGCGTCTCTGGAGCTGCAAAATGCCTTCGAGTCGTTTGATAATGAGGGCTGTCTCACCATCAGCTCTGTTGATGATGATGGGACTTCCTGCACGGTGGTGAAACTGATGGAGCCTAAAGTGACGGGACGGCAGTGCTCTTCAGCGGCGACCCGGAAAGACAGTGGTGGTGGGCTGATATACAGGGGTGGCGCCCCTGGGGTGTCCGTAGCAAATATCCCGAGCTGGGTCTTCTGGGGCTATTTTTGGAGTGTGGGCCTTAAGCAACGCTATAAGTGGGTGGTCTGGGTCCTACGAGTTGTTAGGGTCTGGGCTGCCTTAGATATGAGAGTTGAAGGTCAATTTTCACCTTCTGCTATCATTATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

211

Amino Acids

23.1

Weight (kDa)

6.15

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15620 FvH4_6g15621
rosa_chinensis	RchiOBHm_Chr3g0469211
rosa_laevigata	RLG00000024365
rosa_roxburghii	Rroxscaffold_6G00392140 Rroxscaffold_6G00412030 Rroxscaffold_6G00412090 Rroxscaffold_6G00412100
rosa_rugosa	Rorug03G0100200
rosa_samantha	Rh3AG149500 Rh3BG172800 Rh3CG164200 Rh3DG202800
rosa_wichuraiana	Rw3G014110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	148, 452
AciI	CCGC	2 cut(s)	32, 407
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	387
AcyI	GRCGYC	2 cut(s)	149, 453
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	2 cut(s)	35, 487
AflII	CTTAAG	1 cut(s)	521
AgsI	TTSAA	4 cut(s)	85, 130, 197, 596
AjnI	CCWGG	1 cut(s)	457
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	5 cut(s)	181, 193, 277, 327, 486
AluI	AGCT	5 cut(s)	181, 193, 277, 327, 486
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	2 cut(s)	273, 320
AlwI	GGATC	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	481
AoxI	GGCC	1 cut(s)	517
ApeKI	GCWGC	3 cut(s)	247, 277, 575
ApoI	RAATTY	1 cut(s)	218
AspLEI	GCGC	2 cut(s)	151, 455
AspS9I	GGNCC	3 cut(s)	233, 517, 550
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	3 cut(s)	310, 373, 600
AvaI	CYCGRG	1 cut(s)	481
AvaII	GGWCC	2 cut(s)	233, 550
BanI	GGYRCC	2 cut(s)	148, 452
BbsI	GAAGAC	1 cut(s)	484
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	3 cut(s)	234, 264, 562
BccI	CCATC	4 cut(s)	139, 329, 335, 364
BceAI	ACGGC	3 cut(s)	25, 73, 407
BciT130I	CCWGG	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	2 cut(s)	273, 320
BfoI	RGCGCY	2 cut(s)	152, 456
BfrI	CTTAAG	1 cut(s)	521
BisI	GCNGC	4 cut(s)	248, 278, 408, 576
BlsI	GCNGC	4 cut(s)	249, 279, 409, 577
Bme1390I	CCNGG	2 cut(s)	415, 459
Bme18I	GGWCC	2 cut(s)	233, 550
BmeT110I	CYCGRG	1 cut(s)	481
BmgT120I	GGNCC	3 cut(s)	233, 517, 550
BmiI	GGNNCC	5 cut(s)	150, 234, 375, 454, 551
BmrFI	CCNGG	2 cut(s)	415, 459
BpiI	GAAGAC	1 cut(s)	484
BpmI	CTGGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	415
BsaHI	GRCGYC	2 cut(s)	149, 453
BsaJI	CCNNGG	2 cut(s)	457, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 487
Bse118I	RCCGGY	2 cut(s)	28, 235
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	457, 458
BseGI	GGATG	2 cut(s)	115, 150
BseLI	CCNNNNNNNGG	2 cut(s)	35, 487
BseMII	CTCAG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	234, 264, 562
BseYI	CCCAGC	1 cut(s)	486
BsgI	GTGCAG	2 cut(s)	233, 337
BshFI	GGCC	1 cut(s)	519
BshNI	GGYRCC	2 cut(s)	148, 452
BsiHKAI	GWGCWC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	481
BsiSI	CCGG	3 cut(s)	29, 236, 415
BsiWI	CGTACG	1 cut(s)	13
BslFI	GGGAC	3 cut(s)	246, 358, 402
BslI	CCNNNNNNNGG	2 cut(s)	35, 487
BsmAI	GTCTC	2 cut(s)	273, 320
BsmBI	CGTCTC	1 cut(s)	273
BsmFI	GGGAC	3 cut(s)	246, 358, 402
BsnI	GGCC	1 cut(s)	519
BsoBI	CYCGRG	1 cut(s)	481
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	2 cut(s)	32, 407
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	1 cut(s)	216
BspLI	GGNNCC	5 cut(s)	150, 234, 375, 454, 551
BspPI	GGATC	1 cut(s)	28
BspQI	GCTCTTC	1 cut(s)	406
BspT107I	GGYRCC	2 cut(s)	148, 452
BspTI	CTTAAG	1 cut(s)	521
BsrFI	RCCGGY	2 cut(s)	28, 235
BssAI	RCCGGY	2 cut(s)	28, 235
BssECI	CCNNGG	2 cut(s)	457, 458
BssMI	GATC	1 cut(s)	20
BssNI	GRCGYC	2 cut(s)	149, 453
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	2 cut(s)	358, 425
Bst6I	CTCTTC	1 cut(s)	406
BstACI	GRCGYC	2 cut(s)	149, 453
BstAFI	CTTAAG	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	224, 580
BstF5I	GGATG	2 cut(s)	115, 150
BstH2I	RGCGCY	2 cut(s)	152, 456
BstHHI	GCGC	2 cut(s)	151, 455
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	2 cut(s)	273, 320
BstMBI	GATC	1 cut(s)	20
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	2 cut(s)	413, 457
BstV1I	GCAGC	3 cut(s)	234, 264, 562
BstV2I	GAAGAC	1 cut(s)	484
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	519
BtsCI	GGATG	2 cut(s)	115, 150
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	4 cut(s)	51, 152, 401, 430
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	2 cut(s)	151, 455
Cfr10I	RCCGGY	2 cut(s)	28, 235
Cfr13I	GGNCC	3 cut(s)	233, 517, 550
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	14
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	2 cut(s)	224, 580
DinI	GGCGCC	2 cut(s)	150, 454
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	406
EciI	GGCGGA	1 cut(s)	47
Eco47I	GGWCC	2 cut(s)	233, 550
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	457
EgeI	GGCGCC	2 cut(s)	150, 454
EheI	GGCGCC	2 cut(s)	150, 454
Esp3I	CGTCTC	1 cut(s)	273
FaiI	YATR	6 cut(s)	141, 189, 204, 442, 534, 587
FaqI	GGGAC	3 cut(s)	246, 358, 402
Fnu4HI	GCNGC	4 cut(s)	248, 278, 408, 576
FokI	GGATG	2 cut(s)	122, 157
Fsp4HI	GCNGC	4 cut(s)	248, 278, 408, 576
GlaI	GCGC	2 cut(s)	150, 454
GluI	GCNGC	4 cut(s)	248, 278, 408, 576
GsaI	CCCAGC	1 cut(s)	490
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	2 cut(s)	152, 456
HaeIII	GGCC	1 cut(s)	519
HapII	CCGG	3 cut(s)	29, 236, 415
HgaI	GACGC	1 cut(s)	255
HhaI	GCGC	2 cut(s)	151, 455
Hin1I	GRCGYC	2 cut(s)	149, 453
Hin6I	GCGC	2 cut(s)	149, 453
HinP1I	GCGC	2 cut(s)	149, 453
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	3 cut(s)	56, 157, 293
HpaII	CCGG	3 cut(s)	29, 236, 415
HphI	GGTGA	3 cut(s)	310, 373, 600
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	2 cut(s)	272, 481
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	5 cut(s)	29, 200, 298, 590, 621
HpyCH4III	ACNGT	2 cut(s)	358, 425
HpyCH4V	TGCA	3 cut(s)	250, 280, 354
HpyF3I	CTNAG	2 cut(s)	224, 580
Hsp92I	GRCGYC	2 cut(s)	149, 453
HspAI	GCGC	2 cut(s)	149, 453
KasI	GGCGCC	2 cut(s)	148, 452
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	20
LguI	GCTCTTC	1 cut(s)	406
LmnI	GCTCC	5 cut(s)	79, 178, 263, 274, 373
Lsp1109I	GCAGC	3 cut(s)	234, 264, 562
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	2 cut(s)	393, 484
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	2 cut(s)	218, 602
Mly113I	GGCGCC	2 cut(s)	149, 453
MlyI	GAGTC	2 cut(s)	50, 302
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	4 cut(s)	91, 99, 250, 301
MroNI	GCCGGC	1 cut(s)	28
MseI	TTAA	2 cut(s)	522, 631
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	407
MspCI	CTTAAG	1 cut(s)	521
MspI	CCGG	3 cut(s)	29, 236, 415
MspR9I	CCNGG	2 cut(s)	415, 459
MvaI	CCWGG	1 cut(s)	459
NaeI	GCCGGC	1 cut(s)	30
NarI	GGCGCC	2 cut(s)	149, 453
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	1 cut(s)	20
NgoMIV	GCCGGC	1 cut(s)	28
NlaIV	GGNNCC	5 cut(s)	150, 234, 375, 454, 551
NmuCI	GTSAC	1 cut(s)	382
OliI	CACNNNNGTG	1 cut(s)	359
PasI	CCCWGGG	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	406
PdiI	GCCGGC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	157
Pfl23II	CGTACG	1 cut(s)	13
PkrI	GCNGC	4 cut(s)	249, 279, 409, 577
PleI	GAGTC	2 cut(s)	50, 301
PluTI	GGCGCC	2 cut(s)	152, 456
PpsI	GAGTC	2 cut(s)	50, 301
PpuMI	RGGWCCY	1 cut(s)	550
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	457
PspFI	CCCAGC	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	457
PspLI	CGTACG	1 cut(s)	13
PspN4I	GGNNCC	5 cut(s)	150, 234, 375, 454, 551
PspPI	GGNCC	3 cut(s)	233, 517, 550
PspPPI	RGGWCCY	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	20
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	406
SaqAI	TTAA	2 cut(s)	522, 631
SatI	GCNGC	4 cut(s)	248, 278, 408, 576
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	3 cut(s)	233, 517, 550
SchI	GAGTC	2 cut(s)	50, 302
ScrFI	CCNGG	2 cut(s)	415, 459
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	8 cut(s)	183, 195, 261, 279, 329, 488, 601, 613
SfoI	GGCGCC	2 cut(s)	150, 454
SinI	GGWCC	2 cut(s)	233, 550
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	2 cut(s)	218, 602
SsiI	CCGC	2 cut(s)	32, 407
SspDI	GGCGCC	2 cut(s)	148, 452
StyD4I	CCNGG	2 cut(s)	413, 457
TaaI	ACNGT	2 cut(s)	358, 425
TaqI	TCGA	3 cut(s)	59, 96, 291
TasI	AATT	2 cut(s)	218, 602
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	2 cut(s)	522, 631
Tru9I	TTAA	2 cut(s)	522, 631
TscAI	CASTG	4 cut(s)	58, 159, 401, 430
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	3 cut(s)	247, 277, 575
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	219
TspGWI	ACGGA	1 cut(s)	457
TspRI	CASTG	4 cut(s)	58, 159, 401, 430
Vha464I	CTTAAG	1 cut(s)	521
VpaK11BI	GGWCC	2 cut(s)	233, 550
XapI	RAATTY	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.