Rw3G014110

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016880
Physical Location & Seq
Forward (+)
14024100 .. 14025383
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G014110.1

Sequence Viewer

Length: 1062 bp
ATGAAACTATCAAACTTAATTCTTCTCCTTGCTGTGCTTCCAGCAGCACTGGCTGCTGGAAAGAACTCTTTCCCCATCAAACGTTCCAACAAACCCATTAGTGACCTAGCACTAGCAGCTCCCCGTGCCATTCTCCCATCCAACTCCGGCATGTTCTATGTCCAACTGGGCCTAGGCACTCCGGCTTTTGATACCGTAAGCCCCATGACCTGGTTACAGGTTCCAGAGCGCGAGCTTTGCTTTCCTGTGGACGAGGGAGGGTCCTTCGACCCCAACCACTCCTCTACGTTTACATTGTTGAGCTCTGGCGACCCGATGTGCTCTCCTCCCCTCGGCATTCCATTGTCCAACGGCTCATGCGACTACAACCTTGGATATAGCAAGGGATTTTTCAGCACGGACATACTCTCATACTCTGTTGATGATGCTGCTGCTACCGAGGTTTCACTTAACGTGTCTTTCGGTTGCGGCTTATTCAATCAATTGGCTTTCGGTGGTGACGACGAATCAGGGAATCCCATCTCCGGTGTGATGGGATTGGGTCTCGGTCATCCTTCCGGTCTCCTTACCCAACTCCGGCCGGTCATGATGGACCGGTTTTCCTACTGCATTCCACCTCTGTTTCCAGACGCGACCTTGGACTTCAGTCCTGAAGCTGTCCTTACCGGGGCGGTACAGAGTACCAGACTCCTCGAACAACCTCCCCTTCTATACCACCACTACTACTTGATCAAGGTCACCGGCATCATGGTCAACGGGAATCTCTGCCGGCGGAAGGACTCACTTTCGGAGTTGAGGGATGTGGTTCTCAAGCATTTCATGGACAAGTATGGGATGGCGCCACTGAACCAAACGCAGTCGGGTTTGGAGCTGTGTTATGAGCTTCAAAAATATGAAGGACGAACCGAATTTCTGAGCAGGGGACCGGCAGTTGTGCACTTGTGCTACACTTGGAGGGTGGAGCGCCTCTGGAGCTGCAAAATGCCTCCGAGTTGTTTGAGGATGAGGGCTGTCTCACCATCATCTCTGTTGATGATGATAGGAGTATGCCAAACCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

353

Amino Acids

38.52

Weight (kDa)

5.88

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 52 - 204 2e-17 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 838
AccB7I CCANNNNNTGG 1 cut(s) 210
AccII CGCG 2 cut(s) 231, 632
AciI CCGC 3 cut(s) 468, 671, 772
AclI AACGTT 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 578
AcsI RAATTY 1 cut(s) 908
AcuI CTGAAG 2 cut(s) 628, 672
AcyI GRCGYC 1 cut(s) 839
AfaI GTAC 2 cut(s) 675, 682
AfiI CCNNNNNNNGG 6 cut(s) 210, 332, 524, 576, 667, 775
AflIII ACRYGT 1 cut(s) 453
AgeI ACCGGT 1 cut(s) 594
AgsI TTSAA 2 cut(s) 478, 887
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 7 cut(s) 119, 235, 303, 656, 871, 883, 975
AluI AGCT 7 cut(s) 119, 235, 303, 656, 871, 883, 975
Alw21I GWGCWC 3 cut(s) 305, 323, 939
Alw26I GTCTC 3 cut(s) 548, 566, 1018
Alw44I GTGCAC 1 cut(s) 935
AoxI GGCC 2 cut(s) 169, 578
ApaLI GTGCAC 1 cut(s) 935
ApeKI GCWGC 6 cut(s) 44, 53, 116, 428, 431, 975
ApoI RAATTY 1 cut(s) 908
AsiGI ACCGGT 1 cut(s) 594
Asp700I GAANNNNTTC 1 cut(s) 68
AspA2I CCTAGG 1 cut(s) 172
AspLEI GCGC 3 cut(s) 231, 841, 966
AspS9I GGNCC 4 cut(s) 169, 261, 592, 923
AsuC2I CCSGG 1 cut(s) 667
AsuHPI GGTGA 3 cut(s) 509, 730, 1008
AvaII GGWCC 3 cut(s) 261, 592, 923
AvrII CCTAGG 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 939
BanI GGYRCC 1 cut(s) 838
BanII GRGCYC 1 cut(s) 305
Bbv12I GWGCWC 3 cut(s) 305, 323, 939
BbvI GCAGC 6 cut(s) 40, 56, 128, 415, 418, 962
BccI CCATC 7 cut(s) 83, 145, 526, 527, 583, 829, 1027
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 1 cut(s) 211
BclI TGATCA 1 cut(s) 729
BcnI CCSGG 1 cut(s) 667
BcoDI GTCTC 3 cut(s) 548, 566, 1018
BfaI CTAG 3 cut(s) 107, 113, 173
BfoI RGCGCY 2 cut(s) 842, 967
BisI GCNGC 7 cut(s) 45, 54, 117, 429, 432, 469, 976
BlnI CCTAGG 1 cut(s) 172
BlsI GCNGC 7 cut(s) 46, 55, 118, 430, 433, 470, 977
Bme1390I CCNGG 2 cut(s) 211, 667
Bme18I GGWCC 3 cut(s) 261, 592, 923
BmgT120I GGNCC 4 cut(s) 169, 261, 592, 923
BmiI GGNNCC 4 cut(s) 222, 262, 840, 924
BmrFI CCNGG 2 cut(s) 211, 667
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 2 cut(s) 415, 753
BmuI ACTGGG 1 cut(s) 176
BoxI GACNNNNGTC 1 cut(s) 645
BpmI CTGGAG 1 cut(s) 991
BpuEI CTTGAG 1 cut(s) 794
BpuMI CCSGG 1 cut(s) 667
BsaHI GRCGYC 1 cut(s) 839
BsaI GGTCTC 2 cut(s) 548, 566
BsaJI CCNNGG 6 cut(s) 172, 331, 370, 438, 636, 666
BsaWI WCCGGW 3 cut(s) 524, 557, 594
Bsc4I CCNNNNNNNGG 6 cut(s) 210, 332, 524, 576, 667, 775
Bse118I RCCGGY 5 cut(s) 580, 594, 740, 768, 925
Bse1I ACTGG 2 cut(s) 54, 171
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 6 cut(s) 172, 331, 370, 438, 636, 666
BseGI GGATG 5 cut(s) 137, 550, 805, 840, 1008
BseLI CCNNNNNNNGG 6 cut(s) 210, 332, 524, 576, 667, 775
BseMII CTCAG 1 cut(s) 905
BseNI ACTGG 2 cut(s) 54, 171
BseRI GAGGAG 3 cut(s) 271, 315, 680
BseSI GKGCMC 1 cut(s) 939
BseX3I CGGCCG 1 cut(s) 578
BseXI GCAGC 6 cut(s) 40, 56, 128, 415, 418, 962
Bsh1236I CGCG 2 cut(s) 231, 632
Bsh1285I CGRYCG 1 cut(s) 581
BshFI GGCC 2 cut(s) 171, 580
BshNI GGYRCC 1 cut(s) 838
BshTI ACCGGT 1 cut(s) 594
BsiEI CGRYCG 1 cut(s) 581
BsiHKAI GWGCWC 3 cut(s) 305, 323, 939
BslFI GGGAC 1 cut(s) 936
BslI CCNNNNNNNGG 6 cut(s) 210, 332, 524, 576, 667, 775
BsmAI GTCTC 3 cut(s) 548, 566, 1018
BsmFI GGGAC 1 cut(s) 936
BsmI GAATGC 2 cut(s) 336, 609
BsnI GGCC 2 cut(s) 171, 580
Bso31I GGTCTC 2 cut(s) 548, 566
Bsp1286I GDGCHC 3 cut(s) 305, 323, 939
Bsp143I GATC 1 cut(s) 729
BspACI CCGC 3 cut(s) 468, 671, 772
BspANI GGCC 2 cut(s) 171, 580
BspCNI CTCAG 1 cut(s) 906
BspFNI CGCG 2 cut(s) 231, 632
BspHI TCATGA 1 cut(s) 585
BspLI GGNNCC 4 cut(s) 222, 262, 840, 924
BspT107I GGYRCC 1 cut(s) 838
BspTNI GGTCTC 2 cut(s) 548, 566
BsrFI RCCGGY 5 cut(s) 580, 594, 740, 768, 925
BsrI ACTGG 2 cut(s) 54, 171
BssAI RCCGGY 5 cut(s) 580, 594, 740, 768, 925
BssECI CCNNGG 6 cut(s) 172, 331, 370, 438, 636, 666
BssMI GATC 1 cut(s) 729
BssNI GRCGYC 1 cut(s) 839
BssT1I CCWWGG 3 cut(s) 172, 370, 636
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 196
BstACI GRCGYC 1 cut(s) 839
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 233, 770
BstDEI CTNAG 1 cut(s) 914
BstEII GGTNACC 1 cut(s) 736
BstF5I GGATG 5 cut(s) 137, 550, 805, 840, 1008
BstFNI CGCG 2 cut(s) 231, 632
BstH2I RGCGCY 2 cut(s) 842, 967
BstHHI GCGC 3 cut(s) 231, 841, 966
BstKTI GATC 1 cut(s) 732
BstMAI GTCTC 3 cut(s) 548, 566, 1018
BstMBI GATC 1 cut(s) 729
BstMCI CGRYCG 1 cut(s) 581
BstMWI GCNNNNNNNGC 6 cut(s) 50, 53, 116, 125, 237, 972
BstNI CCWGG 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 154
BstPAI GACNNNNGTC 1 cut(s) 645
BstPI GGTNACC 1 cut(s) 736
BstSCI CCNGG 2 cut(s) 209, 665
BstSLI GKGCMC 1 cut(s) 939
BstUI CGCG 2 cut(s) 231, 632
BstV1I GCAGC 6 cut(s) 40, 56, 128, 415, 418, 962
BstZI CGGCCG 1 cut(s) 578
BsuRI GGCC 2 cut(s) 171, 580
BtsCI GGATG 5 cut(s) 137, 550, 805, 840, 1008
BtsIMutI CAGTG 2 cut(s) 47, 842
Cac8I GCNNGC 2 cut(s) 233, 770
CciI TCATGA 1 cut(s) 585
CfoI GCGC 3 cut(s) 231, 841, 966
Cfr10I RCCGGY 5 cut(s) 580, 594, 740, 768, 925
Cfr13I GGNCC 4 cut(s) 169, 261, 592, 923
CseI GACGC 1 cut(s) 638
CsiI ACCWGGT 1 cut(s) 209
Csp6I GTAC 2 cut(s) 674, 681
CspAI ACCGGT 1 cut(s) 594
CviAII CATG 6 cut(s) 151, 205, 357, 586, 748, 820
CviQI GTAC 2 cut(s) 674, 681
DdeI CTNAG 1 cut(s) 914
DinI GGCGCC 1 cut(s) 840
DpnI GATC 1 cut(s) 731
DpnII GATC 1 cut(s) 729
EaeI YGGCCR 1 cut(s) 578
EagI CGGCCG 1 cut(s) 578
EciI GGCGGA 1 cut(s) 787
Ecl136II GAGCTC 1 cut(s) 303
EclXI CGGCCG 1 cut(s) 578
Eco130I CCWWGG 3 cut(s) 172, 370, 636
Eco24I GRGCYC 1 cut(s) 305
Eco31I GGTCTC 2 cut(s) 548, 566
Eco47I GGWCC 3 cut(s) 261, 592, 923
Eco52I CGGCCG 1 cut(s) 578
Eco53kI GAGCTC 1 cut(s) 303
Eco57I CTGAAG 2 cut(s) 628, 672
Eco91I GGTNACC 1 cut(s) 736
EcoICRI GAGCTC 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 261
EcoO65I GGTNACC 1 cut(s) 736
EcoRII CCWGG 1 cut(s) 209
EcoT14I CCWWGG 3 cut(s) 172, 370, 636
EcoT38I GRGCYC 1 cut(s) 305
EgeI GGCGCC 1 cut(s) 840
EheI GGCGCC 1 cut(s) 840
ErhI CCWWGG 3 cut(s) 172, 370, 636
FaeI CATG 6 cut(s) 154, 208, 360, 589, 751, 823
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FaqI GGGAC 1 cut(s) 936
FatI CATG 6 cut(s) 150, 204, 356, 585, 747, 819
FbaI TGATCA 1 cut(s) 729
Fnu4HI GCNGC 7 cut(s) 45, 54, 117, 429, 432, 469, 976
FokI GGATG 5 cut(s) 124, 537, 812, 847, 1015
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 7 cut(s) 45, 54, 117, 429, 432, 469, 976
FspBI CTAG 3 cut(s) 107, 113, 173
GlaI GCGC 3 cut(s) 230, 840, 965
GluI GCNGC 7 cut(s) 45, 54, 117, 429, 432, 469, 976
GsuI CTGGAG 1 cut(s) 991
HaeII RGCGCY 2 cut(s) 842, 967
HaeIII GGCC 2 cut(s) 171, 580
HgaI GACGC 1 cut(s) 638
HhaI GCGC 3 cut(s) 231, 841, 966
Hin1I GRCGYC 1 cut(s) 839
Hin1II CATG 6 cut(s) 154, 208, 360, 589, 751, 823
Hin6I GCGC 3 cut(s) 229, 839, 964
HinP1I GCGC 3 cut(s) 229, 839, 964
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HinfI GANTC 5 cut(s) 506, 514, 687, 760, 779
HphI GGTGA 3 cut(s) 509, 730, 1008
Hpy166II GTNNAC 4 cut(s) 250, 291, 754, 937
Hpy188I TCNGA 3 cut(s) 790, 915, 990
Hpy188III TCNNGA 5 cut(s) 224, 586, 626, 650, 970
Hpy8I GTNNAC 4 cut(s) 250, 291, 754, 937
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 5 cut(s) 274, 564, 716, 769, 890
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 3 cut(s) 82, 287, 453
HpyCH4V TGCA 3 cut(s) 609, 937, 978
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 53, 116, 125, 237, 972
HpyF3I CTNAG 1 cut(s) 914
HpySE526I ACGT 3 cut(s) 82, 287, 453
Hsp92I GRCGYC 1 cut(s) 839
Hsp92II CATG 6 cut(s) 154, 208, 360, 589, 751, 823
HspAI GCGC 3 cut(s) 229, 839, 964
KasI GGCGCC 1 cut(s) 838
KroI GCCGGC 1 cut(s) 768
KroNI GCCGGC 1 cut(s) 770
Ksp22I TGATCA 1 cut(s) 729
Kzo9I GATC 1 cut(s) 729
LmnI GCTCC 4 cut(s) 124, 868, 961, 972
Lsp1109I GCAGC 6 cut(s) 40, 56, 128, 415, 418, 962
LweI GCATC 2 cut(s) 415, 753
MabI ACCWGGT 1 cut(s) 209
MaeI CTAG 3 cut(s) 107, 113, 173
MaeII ACGT 3 cut(s) 82, 287, 453
MaeIII GTNAC 4 cut(s) 101, 213, 497, 736
MalI GATC 1 cut(s) 731
MboI GATC 1 cut(s) 729
MboII GAAGA 1 cut(s) 14
MfeI CAATTG 1 cut(s) 482
MhlI GDGCHC 3 cut(s) 305, 323, 939
MluCI AATT 3 cut(s) 18, 482, 908
Mly113I GGCGCC 1 cut(s) 839
MlyI GAGTC 2 cut(s) 681, 773
MmeI TCCRAC 4 cut(s) 111, 165, 187, 372
MroNI GCCGGC 1 cut(s) 768
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 2 cut(s) 17, 450
MspR9I CCNGG 2 cut(s) 211, 667
MunI CAATTG 1 cut(s) 482
Mva1269I GAATGC 2 cut(s) 336, 609
MvaI CCWGG 1 cut(s) 211
MvnI CGCG 2 cut(s) 231, 632
MwoI GCNNNNNNNGC 6 cut(s) 50, 53, 116, 125, 237, 972
NaeI GCCGGC 1 cut(s) 770
NarI GGCGCC 1 cut(s) 839
NciI CCSGG 1 cut(s) 667
NdeII GATC 1 cut(s) 729
NgoMIV GCCGGC 1 cut(s) 768
NlaIII CATG 6 cut(s) 154, 208, 360, 589, 751, 823
NlaIV GGNNCC 4 cut(s) 222, 262, 840, 924
NmeAIII GCCGAG 1 cut(s) 312
NmuCI GTSAC 3 cut(s) 101, 497, 736
NspI RCATGY 1 cut(s) 154
PagI TCATGA 1 cut(s) 585
PcsI WCGNNNNNNNCGW 2 cut(s) 357, 498
PctI GAATGC 2 cut(s) 336, 609
PdiI GCCGGC 1 cut(s) 770
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 3 cut(s) 506, 514, 760
PflMI CCANNNNNTGG 1 cut(s) 210
PinAI ACCGGT 1 cut(s) 594
PkrI GCNGC 7 cut(s) 46, 55, 118, 430, 433, 470, 977
PleI GAGTC 2 cut(s) 681, 773
PluTI GGCGCC 1 cut(s) 842
PpsI GAGTC 2 cut(s) 681, 773
PpuMI RGGWCCY 1 cut(s) 261
PshAI GACNNNNGTC 1 cut(s) 645
Psp124BI GAGCTC 1 cut(s) 305
Psp1406I AACGTT 1 cut(s) 82
Psp5II RGGWCCY 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 209
PspEI GGTNACC 1 cut(s) 736
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 4 cut(s) 222, 262, 840, 924
PspPI GGNCC 4 cut(s) 169, 261, 592, 923
PspPPI RGGWCCY 1 cut(s) 261
RsaI GTAC 2 cut(s) 675, 682
RsaNI GTAC 2 cut(s) 674, 681
SacI GAGCTC 1 cut(s) 305
SaqAI TTAA 2 cut(s) 17, 450
SatI GCNGC 7 cut(s) 45, 54, 117, 429, 432, 469, 976
Sau3AI GATC 1 cut(s) 729
Sau96I GGNCC 4 cut(s) 169, 261, 592, 923
SchI GAGTC 2 cut(s) 681, 773
ScrFI CCNGG 2 cut(s) 211, 667
SduI GDGCHC 3 cut(s) 305, 323, 939
SexAI ACCWGGT 1 cut(s) 209
SfaNI GCATC 2 cut(s) 415, 753
SfoI GGCGCC 1 cut(s) 840
SinI GGWCC 3 cut(s) 261, 592, 923
SmlI CTYRAG 1 cut(s) 809
SmoI CTYRAG 1 cut(s) 809
Sse9I AATT 3 cut(s) 18, 482, 908
SsiI CCGC 3 cut(s) 468, 671, 772
SspDI GGCGCC 1 cut(s) 838
SspMI CTAG 3 cut(s) 107, 113, 173
SstI GAGCTC 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 209, 665
StyI CCWWGG 3 cut(s) 172, 370, 636
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 3 cut(s) 85, 290, 456
TaqI TCGA 2 cut(s) 267, 693
TaqII GACCGA 1 cut(s) 536
TasI AATT 3 cut(s) 18, 482, 908
TauI GCSGC 1 cut(s) 471
TfiI GAWTC 3 cut(s) 506, 514, 760
Tru1I TTAA 2 cut(s) 17, 450
Tru9I TTAA 2 cut(s) 17, 450
TscAI CASTG 2 cut(s) 54, 849
TseFI GTSAC 3 cut(s) 101, 497, 736
TseI GCWGC 6 cut(s) 44, 53, 116, 428, 431, 975
Tsp45I GTSAC 3 cut(s) 101, 497, 736
TspDTI ATGAA 3 cut(s) 17, 808, 909
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 2 cut(s) 54, 849
Van91I CCANNNNNTGG 1 cut(s) 210
VneI GTGCAC 1 cut(s) 935
VpaK11BI GGWCC 3 cut(s) 261, 592, 923
XapI RAATTY 1 cut(s) 908
XceI RCATGY 1 cut(s) 154
XmaJI CCTAGG 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 3 cut(s) 107, 113, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.