FvH4_6g15621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016880
Physical Location & Seq
Forward (+)
9721091 .. 9724722
3632 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15621.t1

Sequence Viewer

Length: 696 bp
ATGGCTCCCTACACGGCAATGTCCAAGCCCTACTTCCAGGGGTTGAGAGCAGCTGTTGTCGAGCACTTCTTGGACAGTTTCGGGATGATTCCACTGAACGACACGATGACGACAGGTTTCGAACTGTGTTATGATGTTGATAAGTATGGAGGAGCAGACGTATTTATGAGCAGGGCACCAATAGTTATGCTCCACCCTCTATATGGAGCTCAAAAATACCTTCGATTGCTGAAATTCGATTGCAATGGAGGAAACTTGAAGAGTGATTTGATGCAACAAAGAGGAGAATGCGCTATGGCAATTCTGATTGCTGTTGTAATAGTTGACAAGATATTGGATGAGGACGCGGAGGTGTTGGCCAGAGAAGGTAGGAGAAGAGGCGGAGGAGATAGGGCCGTGGGATTGGGCTCAGAAGTTAACAGAGTTAATGGGGGTCTTTGGGACAGTGATGATGTGTCGAATTTTAATTTATGGCACAGGATTGGCACTGGTTCCCCCCGATGCTTTTCTGACGTTTCTAAGAAAACATTATCAACCTTCAAGGCACCGGCCACCAAGGTGTACAGTCAGAAACATGATGATACGGCTGGAAGCAACCGGAAAAGATCGCGTTTCCGGCGTTTACAAGAAAACATCCTCATCCTACAAGGCACCGGCTACCGCGGGGTGCCGCCGGAAACTCGGGGATATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.64

Weight (kDa)

9.01

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 175, 544, 650, 667
AccII CGCG 3 cut(s) 347, 610, 663
AciI CCGC 5 cut(s) 347, 381, 661, 663, 671
AcoI YGGCCR 2 cut(s) 357, 549
AcsI RAATTY 2 cut(s) 233, 460
AfaI GTAC 1 cut(s) 563
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 2 cut(s) 259, 541
AjnI CCWGG 1 cut(s) 36
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AleI CACNNNNGTG 1 cut(s) 557
AluBI AGCT 2 cut(s) 53, 209
AluI AGCT 2 cut(s) 53, 209
Alw21I GWGCWC 2 cut(s) 66, 211
Ama87I CYCGRG 1 cut(s) 681
AoxI GGCC 3 cut(s) 357, 393, 549
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 2 cut(s) 233, 460
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 393
AsuII TTCGAA 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 681
BaeGI GKGCMC 1 cut(s) 178
BalI TGGCCA 1 cut(s) 359
BanI GGYRCC 4 cut(s) 175, 544, 650, 667
BanII GRGCYC 2 cut(s) 211, 410
Bbv12I GWGCWC 2 cut(s) 66, 211
BbvI GCAGC 1 cut(s) 62
BceAI ACGGC 3 cut(s) 30, 380, 600
BciT130I CCWGG 1 cut(s) 38
BfaI CTAG 1 cut(s) 694
BisI GCNGC 2 cut(s) 51, 671
BlsI GCNGC 2 cut(s) 52, 672
Bme1390I CCNGG 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 681
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 6 cut(s) 6, 177, 493, 546, 652, 669
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 2 cut(s) 261, 491
Bpu14I TTCGAA 1 cut(s) 120
BsaJI CCNNGG 4 cut(s) 37, 396, 555, 661
BsaWI WCCGGW 1 cut(s) 597
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse118I RCCGGY 2 cut(s) 547, 653
Bse1I ACTGG 1 cut(s) 493
Bse3DI GCAATG 2 cut(s) 24, 250
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 4 cut(s) 37, 396, 555, 661
BseGI GGATG 4 cut(s) 90, 343, 633, 639
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 2 cut(s) 24, 250
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 493
BseRI GAGGAG 3 cut(s) 165, 297, 399
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 1 cut(s) 62
Bsh1236I CGCG 3 cut(s) 347, 610, 663
BshFI GGCC 3 cut(s) 359, 395, 551
BshNI GGYRCC 4 cut(s) 175, 544, 650, 667
BsiHKAI GWGCWC 2 cut(s) 66, 211
BsiHKCI CYCGRG 1 cut(s) 681
BsiSI CCGG 5 cut(s) 548, 598, 616, 654, 674
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 455
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 3 cut(s) 359, 395, 551
BsoBI CYCGRG 1 cut(s) 681
Bsp119I TTCGAA 1 cut(s) 120
Bsp1286I GDGCHC 4 cut(s) 66, 178, 211, 410
Bsp1407I TGTACA 1 cut(s) 561
Bsp143I GATC 1 cut(s) 605
BspACI CCGC 5 cut(s) 347, 381, 661, 663, 671
BspANI GGCC 3 cut(s) 359, 395, 551
BspCNI CTCAG 1 cut(s) 422
BspFNI CGCG 3 cut(s) 347, 610, 663
BspLI GGNNCC 6 cut(s) 6, 177, 493, 546, 652, 669
BspT104I TTCGAA 1 cut(s) 120
BspT107I GGYRCC 4 cut(s) 175, 544, 650, 667
BsrDI GCAATG 2 cut(s) 24, 250
BsrFI RCCGGY 2 cut(s) 547, 653
BsrGI TGTACA 1 cut(s) 561
BsrI ACTGG 1 cut(s) 493
BssAI RCCGGY 2 cut(s) 547, 653
BssECI CCNNGG 4 cut(s) 37, 396, 555, 661
BssMI GATC 1 cut(s) 605
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 4 cut(s) 77, 126, 446, 566
Bst6I CTCTTC 2 cut(s) 254, 370
BstAUI TGTACA 1 cut(s) 561
BstBI TTCGAA 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 409, 519
BstDSI CCRYGG 2 cut(s) 396, 661
BstF5I GGATG 4 cut(s) 90, 343, 633, 639
BstFNI CGCG 3 cut(s) 347, 610, 663
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 1 cut(s) 608
BstMBI GATC 1 cut(s) 605
BstMWI GCNNNNNNNGC 1 cut(s) 616
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 178
BstUI CGCG 3 cut(s) 347, 610, 663
BstV1I GCAGC 1 cut(s) 62
BsuRI GGCC 3 cut(s) 359, 395, 551
BtgI CCRYGG 2 cut(s) 396, 661
BtsCI GGATG 4 cut(s) 90, 343, 633, 639
BtsIMutI CAGTG 3 cut(s) 92, 451, 486
CfoI GCGC 1 cut(s) 293
Cfr10I RCCGGY 2 cut(s) 547, 653
Cfr13I GGNCC 1 cut(s) 393
Cfr42I CCGCGG 1 cut(s) 664
CseI GACGC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 562
CviAII CATG 1 cut(s) 575
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 2 cut(s) 409, 519
DpnI GATC 1 cut(s) 607
DpnII GATC 1 cut(s) 605
EaeI YGGCCR 2 cut(s) 357, 549
Eam1104I CTCTTC 2 cut(s) 254, 370
EarI CTCTTC 2 cut(s) 254, 370
EciI GGCGGA 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 555
Eco24I GRGCYC 2 cut(s) 211, 410
Eco53kI GAGCTC 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 681
EcoICRI GAGCTC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 555
EcoT38I GRGCYC 2 cut(s) 211, 410
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 1 cut(s) 578
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FaqI GGGAC 1 cut(s) 455
FatI CATG 1 cut(s) 574
FauI CCCGC 1 cut(s) 656
Fnu4HI GCNGC 2 cut(s) 51, 671
FokI GGATG 4 cut(s) 97, 350, 620, 626
FriOI GRGCYC 2 cut(s) 211, 410
Fsp4HI GCNGC 2 cut(s) 51, 671
FspBI CTAG 1 cut(s) 694
GlaI GCGC 1 cut(s) 292
GluI GCNGC 2 cut(s) 51, 671
HaeIII GGCC 3 cut(s) 359, 395, 551
HapII CCGG 5 cut(s) 548, 598, 616, 654, 674
HgaI GACGC 1 cut(s) 353
HhaI GCGC 1 cut(s) 293
Hin1II CATG 1 cut(s) 578
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HincII GTYRAC 2 cut(s) 325, 418
HindII GTYRAC 2 cut(s) 325, 418
HinfI GANTC 1 cut(s) 88
HpaI GTTAAC 1 cut(s) 418
HpaII CCGG 5 cut(s) 548, 598, 616, 654, 674
Hpy166II GTNNAC 4 cut(s) 325, 418, 562, 623
Hpy188I TCNGA 4 cut(s) 306, 412, 511, 570
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 4 cut(s) 325, 418, 562, 623
HpyAV CCTTC 3 cut(s) 230, 359, 547
HpyCH4III ACNGT 4 cut(s) 77, 126, 446, 566
HpyCH4IV ACGT 2 cut(s) 159, 513
HpyCH4V TGCA 2 cut(s) 243, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 616
HpyF3I CTNAG 2 cut(s) 409, 519
HpySE526I ACGT 2 cut(s) 159, 513
Hsp92II CATG 1 cut(s) 578
HspAI GCGC 1 cut(s) 291
KspAI GTTAAC 1 cut(s) 418
KspI CCGCGG 1 cut(s) 664
Kzo9I GATC 1 cut(s) 605
LmnI GCTCC 4 cut(s) 10, 152, 195, 206
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 2 cut(s) 261, 491
MaeI CTAG 1 cut(s) 694
MaeII ACGT 2 cut(s) 159, 513
MalI GATC 1 cut(s) 607
MboI GATC 1 cut(s) 605
MboII GAAGA 2 cut(s) 271, 387
MhlI GDGCHC 4 cut(s) 66, 178, 211, 410
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 4 cut(s) 233, 300, 460, 466
MluNI TGGCCA 1 cut(s) 359
MnlI CCTC 9 cut(s) 143, 207, 242, 275, 334, 343, 371, 377, 647
Mox20I TGGCCA 1 cut(s) 359
MscI TGGCCA 1 cut(s) 359
MseI TTAA 3 cut(s) 417, 426, 465
MslI CAYNNNNRTG 2 cut(s) 17, 557
Msp20I TGGCCA 1 cut(s) 359
MspA1I CMGCKG 2 cut(s) 53, 663
MspI CCGG 5 cut(s) 548, 598, 616, 654, 674
MspR9I CCNGG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 3 cut(s) 347, 610, 663
MwoI GCNNNNNNNGC 1 cut(s) 616
NdeII GATC 1 cut(s) 605
NlaIII CATG 1 cut(s) 578
NlaIV GGNNCC 6 cut(s) 6, 177, 493, 546, 652, 669
NspV TTCGAA 1 cut(s) 120
OliI CACNNNNGTG 1 cut(s) 557
PctI GAATGC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 2 cut(s) 52, 672
Psp124BI GAGCTC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 6 cut(s) 6, 177, 493, 546, 652, 669
PspPI GGNCC 1 cut(s) 393
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
RseI CAYNNNNRTG 2 cut(s) 17, 557
SacI GAGCTC 1 cut(s) 211
SacII CCGCGG 1 cut(s) 664
SaqAI TTAA 3 cut(s) 417, 426, 465
SatI GCNGC 2 cut(s) 51, 671
Sau3AI GATC 1 cut(s) 605
Sau96I GGNCC 1 cut(s) 393
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 4 cut(s) 66, 178, 211, 410
SfaNI GCATC 2 cut(s) 261, 491
Sfr303I CCGCGG 1 cut(s) 664
SfuI TTCGAA 1 cut(s) 120
SgrBI CCGCGG 1 cut(s) 664
SmiMI CAYNNNNRTG 2 cut(s) 17, 557
Sse9I AATT 4 cut(s) 233, 300, 460, 466
SsiI CCGC 5 cut(s) 347, 381, 661, 663, 671
SspMI CTAG 1 cut(s) 694
SstI GAGCTC 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 4 cut(s) 77, 126, 446, 566
TaiI ACGT 2 cut(s) 162, 516
TaqI TCGA 5 cut(s) 60, 120, 223, 237, 458
TasI AATT 4 cut(s) 233, 300, 460, 466
TatI WGTACW 1 cut(s) 561
TauI GCSGC 1 cut(s) 673
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 3 cut(s) 417, 426, 465
Tru9I TTAA 3 cut(s) 417, 426, 465
TscAI CASTG 3 cut(s) 99, 451, 493
TseI GCWGC 1 cut(s) 50
TspRI CASTG 3 cut(s) 99, 451, 493
XapI RAATTY 2 cut(s) 233, 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XspI CTAG 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.