Rh3AG149500

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0016880
Physical Location & Seq
Forward (+)
13250645 .. 13251983
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG149500.1

Sequence Viewer

Length: 864 bp
ATGTTCTATGTCCAACTGGGCATAGGCACTCCGGCTTTTGATACCGTAAGCCCCATGACCTGGTTACAGGTTCCAGAGCGCGAGCTTTGCTTTCCTGTGGACGAGGGAGGGTCCTTCGACCCCAACCACTCCTCTACGTTTACATTGTTGAGCTCTGGCGACCCGATGTGCTCTCCTCCCCTCGGCAATATTCCATTGTCCAACGGCTCATGCGACTACAACCTTGGATATAGCAAGGGATTTTTCAGCACGGACATACTCTCATACTCTGTTGATGATGCTGCTGCTACCGAGGTTTCACTTAACGTGTCTTTCGGTTGCGGCTTATTCAATCAATTGGCTTTCGGTGGTGACGACGAATCAGGGAATCCCATCTCCGGTGTGATGGGATTGGGTCTCGGTCATCCTTCCGGAAGGCAAGGACGCGACCTTGGACTTCAGTCCTCAAGCTGTCCTTACCGGGGCGGTACAGAGTACCAGACTCCTCGAACAACCTCCCCTTCTATACCACCACTACTACTTGATCAAGGTCACCGGCATCATGGTCAACGGGAATCTCTGCCGGCGGAAGGACTCACTTTCGGCATTGACTCGATTTCTCCATACACTGCAATGTTCAAGCCGTATGTAGGAGTTGAGGGATGTGGTTCTCAAACATTTCATGGACAAGGGACCGGCAGTTGTGCACTTGTGCTACACTTGGAGGGTGGAGCGCCTCTGGAGCTGCAAAATGCCTCCGAGTTGTTTGAGGATGAGGGCTGTCTCACCATCATCTCTGTTGATGATGATAGGAGTATGCCAAACCTTTTAGGGGTGCACAACCACATGACTTACAGGTTCCAGTTCGAACCAGATGACCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

287

Amino Acids

30.64

Weight (kDa)

4.38

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 2 - 135 2.9e-14 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 60
AccII CGCG 2 cut(s) 81, 426
AccIII TCCGGA 1 cut(s) 410
AciI CCGC 3 cut(s) 321, 465, 566
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 2 cut(s) 469, 476
AfiI CCNNNNNNNGG 7 cut(s) 60, 182, 377, 461, 569, 629, 811
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 2 cut(s) 331, 619
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 4 cut(s) 85, 153, 450, 724
AluI AGCT 4 cut(s) 85, 153, 450, 724
Alw21I GWGCWC 4 cut(s) 155, 173, 688, 819
Alw26I GTCTC 2 cut(s) 401, 767
Alw44I GTGCAC 2 cut(s) 684, 815
Aor13HI TCCGGA 1 cut(s) 410
ApaLI GTGCAC 2 cut(s) 684, 815
ApeKI GCWGC 3 cut(s) 281, 284, 724
AspLEI GCGC 2 cut(s) 81, 715
AspS9I GGNCC 2 cut(s) 111, 672
AsuC2I CCSGG 1 cut(s) 461
AsuHPI GGTGA 3 cut(s) 362, 524, 757
AsuII TTCGAA 1 cut(s) 846
AvaII GGWCC 2 cut(s) 111, 672
BaeGI GKGCMC 2 cut(s) 688, 819
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 4 cut(s) 155, 173, 688, 819
BbvI GCAGC 3 cut(s) 268, 271, 711
BccI CCATC 3 cut(s) 379, 380, 776
BceAI ACGGC 2 cut(s) 220, 607
BciT130I CCWGG 1 cut(s) 61
BclI TGATCA 1 cut(s) 523
BcnI CCSGG 1 cut(s) 461
BcoDI GTCTC 2 cut(s) 401, 767
BfoI RGCGCY 1 cut(s) 716
BisI GCNGC 4 cut(s) 282, 285, 322, 725
BlsI GCNGC 4 cut(s) 283, 286, 323, 726
Bme1390I CCNGG 2 cut(s) 61, 461
Bme18I GGWCC 2 cut(s) 111, 672
BmgT120I GGNCC 2 cut(s) 111, 672
BmiI GGNNCC 4 cut(s) 72, 112, 673, 839
BmrFI CCNGG 2 cut(s) 61, 461
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 2 cut(s) 268, 547
BmuI ACTGGG 1 cut(s) 26
BoxI GACNNNNGTC 1 cut(s) 439
BpmI CTGGAG 1 cut(s) 740
Bpu14I TTCGAA 1 cut(s) 846
BpuEI CTTGAG 1 cut(s) 430
BpuMI CCSGG 1 cut(s) 461
BsaI GGTCTC 1 cut(s) 401
BsaJI CCNNGG 5 cut(s) 181, 223, 291, 430, 460
BsaWI WCCGGW 2 cut(s) 377, 410
Bsc4I CCNNNNNNNGG 7 cut(s) 60, 182, 377, 461, 569, 629, 811
Bse118I RCCGGY 3 cut(s) 534, 562, 674
Bse1I ACTGG 2 cut(s) 21, 841
Bse3DI GCAATG 1 cut(s) 618
BseAI TCCGGA 1 cut(s) 410
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 5 cut(s) 181, 223, 291, 430, 460
BseGI GGATG 3 cut(s) 403, 647, 757
BseLI CCNNNNNNNGG 7 cut(s) 60, 182, 377, 461, 569, 629, 811
BseMI GCAATG 1 cut(s) 618
BseNI ACTGG 2 cut(s) 21, 841
BseRI GAGGAG 3 cut(s) 121, 165, 474
BseSI GKGCMC 2 cut(s) 688, 819
BseXI GCAGC 3 cut(s) 268, 271, 711
Bsh1236I CGCG 2 cut(s) 81, 426
BsiHKAI GWGCWC 4 cut(s) 155, 173, 688, 819
BsiSI CCGG 7 cut(s) 32, 378, 411, 460, 535, 563, 675
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 7 cut(s) 60, 182, 377, 461, 569, 629, 811
BsmAI GTCTC 2 cut(s) 401, 767
BsmFI GGGAC 1 cut(s) 685
Bso31I GGTCTC 1 cut(s) 401
Bsp119I TTCGAA 1 cut(s) 846
Bsp1286I GDGCHC 4 cut(s) 155, 173, 688, 819
Bsp13I TCCGGA 1 cut(s) 410
Bsp143I GATC 1 cut(s) 523
BspACI CCGC 3 cut(s) 321, 465, 566
BspEI TCCGGA 1 cut(s) 410
BspFNI CGCG 2 cut(s) 81, 426
BspLI GGNNCC 4 cut(s) 72, 112, 673, 839
BspT104I TTCGAA 1 cut(s) 846
BspTNI GGTCTC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 618
BsrFI RCCGGY 3 cut(s) 534, 562, 674
BsrI ACTGG 2 cut(s) 21, 841
BssAI RCCGGY 3 cut(s) 534, 562, 674
BssECI CCNNGG 5 cut(s) 181, 223, 291, 430, 460
BssMI GATC 1 cut(s) 523
BssT1I CCWWGG 2 cut(s) 223, 430
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 46
BstBI TTCGAA 1 cut(s) 846
BstC8I GCNNGC 2 cut(s) 83, 564
BstEII GGTNACC 1 cut(s) 530
BstF5I GGATG 3 cut(s) 403, 647, 757
BstFNI CGCG 2 cut(s) 81, 426
BstH2I RGCGCY 1 cut(s) 716
BstHHI GCGC 2 cut(s) 81, 715
BstKTI GATC 1 cut(s) 526
BstMAI GTCTC 2 cut(s) 401, 767
BstMBI GATC 1 cut(s) 523
BstMWI GCNNNNNNNGC 2 cut(s) 87, 721
BstNI CCWGG 1 cut(s) 61
BstPAI GACNNNNGTC 1 cut(s) 439
BstPI GGTNACC 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 59, 459
BstSLI GKGCMC 2 cut(s) 688, 819
BstUI CGCG 2 cut(s) 81, 426
BstV1I GCAGC 3 cut(s) 268, 271, 711
BtsCI GGATG 3 cut(s) 403, 647, 757
BtsI GCAGTG 1 cut(s) 606
BtsIMutI CAGTG 1 cut(s) 606
Cac8I GCNNGC 2 cut(s) 83, 564
CfoI GCGC 2 cut(s) 81, 715
Cfr10I RCCGGY 3 cut(s) 534, 562, 674
Cfr13I GGNCC 2 cut(s) 111, 672
CseI GACGC 1 cut(s) 432
CsiI ACCWGGT 1 cut(s) 59
Csp6I GTAC 2 cut(s) 468, 475
CviAII CATG 5 cut(s) 55, 210, 542, 662, 826
CviQI GTAC 2 cut(s) 468, 475
DpnI GATC 1 cut(s) 525
DpnII GATC 1 cut(s) 523
EciI GGCGGA 1 cut(s) 581
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 223, 430
Eco24I GRGCYC 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 401
Eco47I GGWCC 2 cut(s) 111, 672
Eco53kI GAGCTC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 422
Eco91I GGTNACC 1 cut(s) 530
EcoICRI GAGCTC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 111
EcoO65I GGTNACC 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 59
EcoT14I CCWWGG 2 cut(s) 223, 430
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 2 cut(s) 223, 430
FaeI CATG 5 cut(s) 58, 213, 545, 665, 829
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FaqI GGGAC 1 cut(s) 685
FatI CATG 5 cut(s) 54, 209, 541, 661, 825
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 4 cut(s) 282, 285, 322, 725
FokI GGATG 3 cut(s) 390, 654, 764
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 4 cut(s) 282, 285, 322, 725
GlaI GCGC 2 cut(s) 80, 714
GluI GCNGC 4 cut(s) 282, 285, 322, 725
GsuI CTGGAG 1 cut(s) 740
HaeII RGCGCY 1 cut(s) 716
HapII CCGG 7 cut(s) 32, 378, 411, 460, 535, 563, 675
HgaI GACGC 1 cut(s) 432
HhaI GCGC 2 cut(s) 81, 715
Hin1II CATG 5 cut(s) 58, 213, 545, 665, 829
Hin6I GCGC 2 cut(s) 79, 713
HinP1I GCGC 2 cut(s) 79, 713
HincII GTYRAC 1 cut(s) 548
HindII GTYRAC 1 cut(s) 548
HinfI GANTC 6 cut(s) 359, 367, 481, 554, 573, 590
HpaII CCGG 7 cut(s) 32, 378, 411, 460, 535, 563, 675
HphI GGTGA 3 cut(s) 362, 524, 757
Hpy166II GTNNAC 5 cut(s) 100, 141, 548, 686, 817
Hpy188I TCNGA 1 cut(s) 739
Hpy188III TCNNGA 3 cut(s) 74, 411, 719
Hpy8I GTNNAC 5 cut(s) 100, 141, 548, 686, 817
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 5 cut(s) 124, 408, 417, 510, 563
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 2 cut(s) 137, 306
HpyCH4V TGCA 4 cut(s) 611, 686, 727, 817
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 721
HpySE526I ACGT 2 cut(s) 137, 306
Hsp92II CATG 5 cut(s) 58, 213, 545, 665, 829
HspAI GCGC 2 cut(s) 79, 713
Kpn2I TCCGGA 1 cut(s) 410
KroI GCCGGC 1 cut(s) 562
KroNI GCCGGC 1 cut(s) 564
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 1 cut(s) 523
LmnI GCTCC 2 cut(s) 710, 721
Lsp1109I GCAGC 3 cut(s) 268, 271, 711
LweI GCATC 2 cut(s) 268, 547
MabI ACCWGGT 1 cut(s) 59
MaeII ACGT 2 cut(s) 137, 306
MaeIII GTNAC 3 cut(s) 63, 350, 530
MalI GATC 1 cut(s) 525
MboI GATC 1 cut(s) 523
MfeI CAATTG 1 cut(s) 335
MhlI GDGCHC 4 cut(s) 155, 173, 688, 819
MluCI AATT 1 cut(s) 335
MlyI GAGTC 3 cut(s) 475, 567, 584
MmeI TCCRAC 2 cut(s) 37, 225
MroI TCCGGA 1 cut(s) 410
MroNI GCCGGC 1 cut(s) 562
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 611
MspI CCGG 7 cut(s) 32, 378, 411, 460, 535, 563, 675
MspR9I CCNGG 2 cut(s) 61, 461
MunI CAATTG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 61
MvnI CGCG 2 cut(s) 81, 426
MwoI GCNNNNNNNGC 2 cut(s) 87, 721
NaeI GCCGGC 1 cut(s) 564
NciI CCSGG 1 cut(s) 461
NdeII GATC 1 cut(s) 523
NgoMIV GCCGGC 1 cut(s) 562
NlaIII CATG 5 cut(s) 58, 213, 545, 665, 829
NlaIV GGNNCC 4 cut(s) 72, 112, 673, 839
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 2 cut(s) 350, 530
NspV TTCGAA 1 cut(s) 846
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 351
PdiI GCCGGC 1 cut(s) 564
PfeI GAWTC 3 cut(s) 359, 367, 554
PflMI CCANNNNNTGG 1 cut(s) 60
PkrI GCNGC 4 cut(s) 283, 286, 323, 726
PleI GAGTC 3 cut(s) 475, 567, 584
PpsI GAGTC 3 cut(s) 475, 567, 584
PpuMI RGGWCCY 1 cut(s) 111
PshAI GACNNNNGTC 1 cut(s) 439
Psp124BI GAGCTC 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 530
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 4 cut(s) 72, 112, 673, 839
PspPI GGNCC 2 cut(s) 111, 672
PspPPI RGGWCCY 1 cut(s) 111
RsaI GTAC 2 cut(s) 469, 476
RsaNI GTAC 2 cut(s) 468, 475
RseI CAYNNNNRTG 1 cut(s) 611
SacI GAGCTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 4 cut(s) 282, 285, 322, 725
Sau3AI GATC 1 cut(s) 523
Sau96I GGNCC 2 cut(s) 111, 672
SchI GAGTC 3 cut(s) 475, 567, 584
ScrFI CCNGG 2 cut(s) 61, 461
SduI GDGCHC 4 cut(s) 155, 173, 688, 819
SexAI ACCWGGT 1 cut(s) 59
SfaNI GCATC 2 cut(s) 268, 547
SfuI TTCGAA 1 cut(s) 846
SinI GGWCC 2 cut(s) 111, 672
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 1 cut(s) 335
SsiI CCGC 3 cut(s) 321, 465, 566
SspI AATATT 1 cut(s) 190
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 59, 459
StyI CCWWGG 2 cut(s) 223, 430
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 2 cut(s) 140, 309
TaqI TCGA 4 cut(s) 117, 487, 593, 846
TaqII GACCGA 1 cut(s) 389
TasI AATT 1 cut(s) 335
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 3 cut(s) 359, 367, 554
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 2 cut(s) 350, 530
TseI GCWGC 3 cut(s) 281, 284, 724
Tsp45I GTSAC 2 cut(s) 350, 530
TspDTI ATGAA 1 cut(s) 650
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 613
Van91I CCANNNNNTGG 1 cut(s) 60
VneI GTGCAC 2 cut(s) 684, 815
VpaK11BI GGWCC 2 cut(s) 111, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.