Rroxscaffold_6G00392140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016880
Physical Location & Seq
Reverse (-)
11348102 .. 11349363
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392140.1

Sequence Viewer

Length: 249 bp
ATGGATCGGATTTGGATCTATATCCACTCCAGATCCGTGGTTATAGAACGGCGGAGCAACTGGTGCCTGGGCACCACGTCAAACGGTGACCCAAGTCACCAAATTTCCACTGTTGTTCCTTCCACCGGGGCTGGGGCAAGAGAGCAGTGGGTGACCCAAGTCAAGAGCTCGGGCAGCATGGTGACTGAGTTGATGACCCAGGCCTCCATTTTGGTGACTGAGGATAGACGCGCCTGGCAATGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.33

Weight (kDa)

9.29

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 63, 71
AccII CGCG 1 cut(s) 231
AciI CCGC 1 cut(s) 52
AclWI GGATC 3 cut(s) 12, 23, 27
AcsI RAATTY 1 cut(s) 102
AfiI CCNNNNNNNGG 3 cut(s) 125, 132, 240
AjiI CACGTC 1 cut(s) 78
AjnI CCWGG 3 cut(s) 66, 198, 233
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw21I GWGCWC 1 cut(s) 170
AlwI GGATC 3 cut(s) 12, 23, 27
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 102
AspLEI GCGC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 5 cut(s) 89, 98, 163, 193, 226
AvaI CYCGRG 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 74
BanI GGYRCC 2 cut(s) 63, 71
BanII GRGCYC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 186
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 3 cut(s) 68, 200, 235
BcnI CCSGG 1 cut(s) 127
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
Bme1390I CCNGG 4 cut(s) 68, 127, 200, 235
BmeT110I CYCGRG 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 78
BmiI GGNNCC 2 cut(s) 65, 73
BmrFI CCNGG 4 cut(s) 68, 127, 200, 235
BoxI GACNNNNGTC 2 cut(s) 93, 158
BpmI CTGGAG 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 127
BsaBI GATNNNNATC 2 cut(s) 14, 20
BsaJI CCNNGG 4 cut(s) 36, 67, 126, 198
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 132, 240
Bse1I ACTGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 245
Bse8I GATNNNNATC 2 cut(s) 14, 20
BseBI CCWGG 3 cut(s) 68, 200, 235
BseDI CCNNGG 4 cut(s) 36, 67, 126, 198
BseJI GATNNNNATC 2 cut(s) 14, 20
BseLI CCNNNNNNNGG 3 cut(s) 125, 132, 240
BseMI GCAATG 1 cut(s) 245
BseMII CTCAG 2 cut(s) 177, 210
BseNI ACTGG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 1 cut(s) 186
BseYI CCCAGC 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 1 cut(s) 203
BshNI GGYRCC 2 cut(s) 63, 71
BsiHKAI GWGCWC 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 1 cut(s) 126
BslI CCNNNNNNNGG 3 cut(s) 125, 132, 240
BsnI GGCC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 74, 170
Bsp143I GATC 3 cut(s) 4, 15, 32
BspACI CCGC 1 cut(s) 52
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 2 cut(s) 178, 211
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 65, 73
BspPI GGATC 3 cut(s) 12, 23, 27
BspT107I GGYRCC 2 cut(s) 63, 71
BsrDI GCAATG 1 cut(s) 245
BsrI ACTGG 1 cut(s) 65
BssECI CCNNGG 4 cut(s) 36, 67, 126, 198
BssMI GATC 3 cut(s) 4, 15, 32
Bst2UI CCWGG 3 cut(s) 68, 200, 235
Bst4CI ACNGT 2 cut(s) 86, 112
BstAPI GCANNNNNTGC 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 186, 219
BstDSI CCRYGG 1 cut(s) 36
BstEII GGTNACC 2 cut(s) 86, 151
BstFNI CGCG 1 cut(s) 231
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 3 cut(s) 7, 18, 35
BstMBI GATC 3 cut(s) 4, 15, 32
BstMWI GCNNNNNNNGC 2 cut(s) 63, 174
BstNI CCWGG 3 cut(s) 68, 200, 235
BstPAI GACNNNNGTC 2 cut(s) 93, 158
BstPI GGTNACC 2 cut(s) 86, 151
BstSCI CCNGG 4 cut(s) 66, 125, 198, 233
BstSLI GKGCMC 1 cut(s) 74
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 186
BstX2I RGATCY 2 cut(s) 15, 32
BstXI CCANNNNNNTGG 1 cut(s) 37
BstYI RGATCY 2 cut(s) 15, 32
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 36
BtrI CACGTC 1 cut(s) 78
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 108, 152
CfoI GCGC 1 cut(s) 233
CseI GACGC 1 cut(s) 237
CviAII CATG 1 cut(s) 178
CviJI RGCY 3 cut(s) 131, 168, 203
CviKI_1 RGCY 3 cut(s) 131, 168, 203
DdeI CTNAG 2 cut(s) 186, 219
DpnI GATC 3 cut(s) 6, 17, 34
DpnII GATC 3 cut(s) 4, 15, 32
EciI GGCGGA 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 169
Eco91I GGTNACC 2 cut(s) 86, 151
EcoICRI GAGCTC 1 cut(s) 168
EcoO65I GGTNACC 2 cut(s) 86, 151
EcoRII CCWGG 3 cut(s) 66, 198, 233
EcoT38I GRGCYC 1 cut(s) 170
FaeI CATG 1 cut(s) 181
FaiI YATR 3 cut(s) 21, 44, 179
FatI CATG 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 175
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 175
GlaI GCGC 1 cut(s) 232
GluI GCNGC 1 cut(s) 175
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 13
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 126
HgaI GACGC 1 cut(s) 237
HhaI GCGC 1 cut(s) 233
Hin1II CATG 1 cut(s) 181
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HpaII CCGG 1 cut(s) 126
HphI GGTGA 5 cut(s) 89, 98, 163, 193, 226
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 30, 163
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 2 cut(s) 86, 112
HpyCH4IV ACGT 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 174
HpyF3I CTNAG 2 cut(s) 186, 219
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 1 cut(s) 181
HspAI GCGC 1 cut(s) 231
Kzo9I GATC 3 cut(s) 4, 15, 32
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 9 cut(s) 43, 46, 53, 80, 117, 139, 185, 212, 220
Lsp1109I GCAGC 1 cut(s) 186
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 5 cut(s) 86, 95, 151, 181, 214
MalI GATC 3 cut(s) 6, 17, 34
MboI GATC 3 cut(s) 4, 15, 32
MflI RGATCY 2 cut(s) 15, 32
MhlI GDGCHC 2 cut(s) 74, 170
MluCI AATT 1 cut(s) 102
MnlI CCTC 3 cut(s) 214, 214, 237
MslI CAYNNNNRTG 1 cut(s) 212
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 4 cut(s) 68, 127, 200, 235
MvaI CCWGG 3 cut(s) 68, 200, 235
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 63, 174
NciI CCSGG 1 cut(s) 127
NdeII GATC 3 cut(s) 4, 15, 32
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 2 cut(s) 65, 73
NmuCI GTSAC 5 cut(s) 86, 95, 151, 181, 214
PceI AGGCCT 1 cut(s) 203
PkrI GCNGC 1 cut(s) 176
PshAI GACNNNNGTC 2 cut(s) 93, 158
Psp124BI GAGCTC 1 cut(s) 170
Psp6I CCWGG 3 cut(s) 66, 198, 233
PspEI GGTNACC 2 cut(s) 86, 151
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 3 cut(s) 66, 198, 233
PspN4I GGNNCC 2 cut(s) 65, 73
PsuI RGATCY 2 cut(s) 15, 32
RseI CAYNNNNRTG 1 cut(s) 212
SacI GAGCTC 1 cut(s) 170
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 3 cut(s) 4, 15, 32
ScrFI CCNGG 4 cut(s) 68, 127, 200, 235
SduI GDGCHC 2 cut(s) 74, 170
SetI ASST 3 cut(s) 80, 170, 248
SmiMI CAYNNNNRTG 1 cut(s) 212
Sse9I AATT 1 cut(s) 102
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 1 cut(s) 52
SstI GAGCTC 1 cut(s) 170
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 4 cut(s) 66, 125, 198, 233
TaaI ACNGT 2 cut(s) 86, 112
TaiI ACGT 1 cut(s) 80
TasI AATT 1 cut(s) 102
TscAI CASTG 2 cut(s) 115, 152
TseFI GTSAC 5 cut(s) 86, 95, 151, 181, 214
TseI GCWGC 1 cut(s) 174
Tsp45I GTSAC 5 cut(s) 86, 95, 151, 181, 214
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 2 cut(s) 115, 152
XapI RAATTY 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.