FvH4_6g15980

Potassium channel

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
9989834 .. 9992450
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15980.t1

Sequence Viewer

Length: 1341 bp
ATGGAACTCCACCAAACCTTTGCTGAAAAGATTTCTGTTGATATAGTAGAGGACAAATGTACTAAAAATGATGGAAGTGGTCTGGTCGCTTCAGTGTCTTTGAGTAAAAGAACGGGTATGACTAAGGAGAAGGTGAAAAGTAATTCCATAGCTTGTACACCAAAATCAGGGCTAAGGGGAAAAAGTCACTCGCACTCTTCACAAACTAAACCGTATACTATGAAAAGGAAAAGAGAAGGAGATGTGGAATATGCAACTAAGCGGCAGAAGTTGGATGGAGGGAGATATAGACAGGTACCACAGATGACAAGTTCAAATAACCAAAACCATCAGATAGTGAAGATACCGGAGGTGCAGGCCAGTGATGACCAAGTACACAACAACCCAATTAACCAGCATGATGAGGAAGGCCCTGGAAGAAGAGATGAAGAGCAGGAGAACCAAGTTGGTAGACCAGGTATAGATGTCAGAGATGATGTTAACAAAGAAGAGTTGGCAGGCAAAGGTACCAGATATATTATTGTGAAGCACGACTCCGTGGGACGTTATTGGGCATGGCTTGATGAAGGAGGAGGTCCCAGAGTTCCATTCAACGCCAATATGGAAATTGTGGAGCATAATGGTGACACAATGATGCATTTTCAGGAAGGAGTAGGACAGCCTATGGAGCCTCCTCCAGCAATGCCGGAAATGGGCATCAGGGGCTTTTTCACACTGGCGCAGACAAGTTTAGGTCTCTTGATCTACATGGTTTTTGGGATACTGTTCTACTATTCAATAGTGGGGGAAGATTCTCCTCATCCTCATCTAAAAGGAGCTGCTTCCTTCAACATACGAGATGCAGTATATTTTCTGATGGTGACCATGTCGTCAACTGGTTATGGTGACATTTCTACATTGCCGGATAGTAGTAGAGAGAAAACTCCTACCTCTGCCAAAGTGATTATTATTTTCATGATGCTGATAGGATGTGGTATCCTGGCCGGCCGGTTAAATGCCACATTTAGCTTTCTTGCCAATGCTTTTGGGAACCGGTTCTTTAACTACTTGGGTCAGCATAGGGGTAGTCCAGTCCCAGAGAACTCTCGGGCTAGATGGAGGTTCTGGTTTGCGGTAGTGGTTGTTTTCTTCTGCATTGGTTTGGGGATCATCGGTGGCATGAAGGAGAATTTAGGATGGGTGGATTCTATATATTTTTCGGTGGCCACTGTGTTATCGGTTGGGTATGGAGACTTCAGTTATAGTTCTCCCGGTGGCAGGTGGTTTGCTATTTGGTGGCTTCCAATAAGCACCACTGTTGTTAATGTCGCGTTGGGATATATCTCCCAATGCGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

447

Amino Acids

49.57

Weight (kDa)

7.69

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 246 - 338 4.9e-10 Ion channel
Ion_trans_2 PF07885 372 - 443 7.9e-10 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1248
AasI GACNNNNNNGTC 1 cut(s) 868
Acc36I ACCTGC 1 cut(s) 1248
Acc65I GGTACC 2 cut(s) 295, 506
AccB1I GGYRCC 2 cut(s) 295, 506
AccI GTMKAC 2 cut(s) 215, 451
AccII CGCG 1 cut(s) 1310
AciI CCGC 3 cut(s) 262, 1112, 1332
AclWI GGATC 1 cut(s) 1154
AcoI YGGCCR 3 cut(s) 981, 985, 1203
AcsI RAATTY 1 cut(s) 1168
AcuI CTGAAG 2 cut(s) 75, 1219
AfaI GTAC 5 cut(s) 61, 157, 297, 375, 508
AfiI CCNNNNNNNGG 3 cut(s) 167, 692, 1257
AgeI ACCGGT 1 cut(s) 1032
AgsI TTSAA 4 cut(s) 315, 592, 777, 829
AjnI CCWGG 3 cut(s) 412, 454, 978
AluBI AGCT 3 cut(s) 152, 818, 1008
AluI AGCT 3 cut(s) 152, 818, 1008
Alw26I GTCTC 2 cut(s) 740, 1224
AlwI GGATC 1 cut(s) 1154
Ama87I CYCGRG 1 cut(s) 1086
AoxI GGCC 5 cut(s) 357, 409, 981, 985, 1203
ApeKI GCWGC 1 cut(s) 818
ApoI RAATTY 1 cut(s) 1168
AsiGI ACCGGT 1 cut(s) 1032
Asp700I GAANNNNTTC 1 cut(s) 1034
Asp718I GGTACC 2 cut(s) 295, 506
AspLEI GCGC 1 cut(s) 721
AspS9I GGNCC 2 cut(s) 410, 575
AsuC2I CCSGG 1 cut(s) 1251
AsuHPI GGTGA 4 cut(s) 145, 635, 871, 896
AvaI CYCGRG 1 cut(s) 1086
AvaII GGWCC 1 cut(s) 575
BalI TGGCCA 1 cut(s) 1205
BanI GGYRCC 2 cut(s) 295, 506
BarI GAAGNNNNNNTAC 2 cut(s) 1217, 1249
BbvI GCAGC 1 cut(s) 805
BccI CCATC 6 cut(s) 65, 269, 336, 850, 1089, 1170
BciT130I CCWGG 3 cut(s) 414, 456, 980
BciVI GTATCC 2 cut(s) 753, 986
BcnI CCSGG 1 cut(s) 1251
BcoDI GTCTC 2 cut(s) 740, 1224
BfaI CTAG 1 cut(s) 1092
BfuAI ACCTGC 1 cut(s) 1248
BfuI GTATCC 2 cut(s) 753, 986
BisI GCNGC 2 cut(s) 263, 819
BlsI GCNGC 2 cut(s) 264, 820
Bme1390I CCNGG 4 cut(s) 414, 456, 980, 1251
Bme18I GGWCC 1 cut(s) 575
BmeT110I CYCGRG 1 cut(s) 1086
BmgT120I GGNCC 2 cut(s) 410, 575
BmiI GGNNCC 5 cut(s) 297, 508, 577, 669, 1031
BmrFI CCNGG 4 cut(s) 414, 456, 980, 1251
BmsI GCATC 4 cut(s) 624, 705, 829, 948
BpmI CTGGAG 1 cut(s) 660
Bpu10I CCTNAGC 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 1251
BsaI GGTCTC 1 cut(s) 740
BsaJI CCNNGG 2 cut(s) 412, 537
BsaWI WCCGGW 2 cut(s) 346, 1032
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 692, 1257
Bse118I RCCGGY 3 cut(s) 983, 987, 1032
Bse1I ACTGG 4 cut(s) 360, 720, 880, 1070
Bse3DI GCAATG 2 cut(s) 687, 896
BseBI CCWGG 3 cut(s) 414, 456, 980
BseDI CCNNGG 2 cut(s) 412, 537
BseGI GGATG 4 cut(s) 280, 799, 974, 1181
BseLI CCNNNNNNNGG 3 cut(s) 167, 692, 1257
BseMI GCAATG 2 cut(s) 687, 896
BseNI ACTGG 4 cut(s) 360, 720, 880, 1070
BseRI GAGGAG 3 cut(s) 585, 663, 786
BseX3I CGGCCG 1 cut(s) 985
BseXI GCAGC 1 cut(s) 805
BsgI GTGCAG 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 1310
Bsh1285I CGRYCG 1 cut(s) 988
BshFI GGCC 5 cut(s) 359, 411, 983, 987, 1205
BshNI GGYRCC 2 cut(s) 295, 506
BshTI ACCGGT 1 cut(s) 1032
BsiEI CGRYCG 1 cut(s) 988
BsiHKCI CYCGRG 1 cut(s) 1086
BsiSI CCGG 7 cut(s) 347, 686, 902, 984, 988, 1033, 1251
BslFI GGGAC 3 cut(s) 555, 561, 1058
BslI CCNNNNNNNGG 3 cut(s) 167, 692, 1257
BsmAI GTCTC 2 cut(s) 740, 1224
BsmFI GGGAC 3 cut(s) 555, 561, 1058
BsnI GGCC 5 cut(s) 359, 411, 983, 987, 1205
Bso31I GGTCTC 1 cut(s) 740
BsoBI CYCGRG 1 cut(s) 1086
Bsp1407I TGTACA 1 cut(s) 155
Bsp143I GATC 2 cut(s) 741, 1146
BspACI CCGC 3 cut(s) 262, 1112, 1332
BspANI GGCC 5 cut(s) 359, 411, 983, 987, 1205
BspFNI CGCG 1 cut(s) 1310
BspHI TCATGA 1 cut(s) 954
BspLI GGNNCC 5 cut(s) 297, 508, 577, 669, 1031
BspMI ACCTGC 1 cut(s) 1248
BspPI GGATC 1 cut(s) 1154
BspQI GCTCTTC 1 cut(s) 423
BspT107I GGYRCC 2 cut(s) 295, 506
BspTNI GGTCTC 1 cut(s) 740
BsrDI GCAATG 2 cut(s) 687, 896
BsrFI RCCGGY 3 cut(s) 983, 987, 1032
BsrGI TGTACA 1 cut(s) 155
BsrI ACTGG 4 cut(s) 360, 720, 880, 1070
BssAI RCCGGY 3 cut(s) 983, 987, 1032
BssECI CCNNGG 2 cut(s) 412, 537
BssMI GATC 2 cut(s) 741, 1146
BssNAI GTATAC 1 cut(s) 216
Bst1107I GTATAC 1 cut(s) 216
Bst2UI CCWGG 3 cut(s) 414, 456, 980
Bst4CI ACNGT 4 cut(s) 213, 765, 1210, 1297
Bst6I CTCTTC 4 cut(s) 202, 415, 423, 483
BstAUI TGTACA 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 357, 499, 985
BstDEI CTNAG 3 cut(s) 123, 173, 258
BstDSI CCRYGG 1 cut(s) 537
BstEII GGTNACC 1 cut(s) 859
BstF5I GGATG 4 cut(s) 280, 799, 974, 1181
BstFNI CGCG 1 cut(s) 1310
BstHHI GCGC 1 cut(s) 721
BstKTI GATC 2 cut(s) 744, 1149
BstMAI GTCTC 2 cut(s) 740, 1224
BstMBI GATC 2 cut(s) 741, 1146
BstMCI CGRYCG 1 cut(s) 988
BstMWI GCNNNNNNNGC 2 cut(s) 667, 702
BstNI CCWGG 3 cut(s) 414, 456, 980
BstPI GGTNACC 1 cut(s) 859
BstSCI CCNGG 4 cut(s) 412, 454, 978, 1249
BstUI CGCG 1 cut(s) 1310
BstV1I GCAGC 1 cut(s) 805
BstZ17I GTATAC 1 cut(s) 216
BstZI CGGCCG 1 cut(s) 985
BsuI GTATCC 2 cut(s) 753, 986
BsuRI GGCC 5 cut(s) 359, 411, 983, 987, 1205
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 4 cut(s) 280, 799, 974, 1181
BtsIMutI CAGTG 5 cut(s) 99, 367, 713, 1206, 1293
BveI ACCTGC 1 cut(s) 1248
Cac8I GCNNGC 3 cut(s) 357, 499, 985
CciI TCATGA 1 cut(s) 954
CfoI GCGC 1 cut(s) 721
Cfr10I RCCGGY 3 cut(s) 983, 987, 1032
Cfr13I GGNCC 2 cut(s) 410, 575
CsiI ACCWGGT 1 cut(s) 454
Csp6I GTAC 5 cut(s) 60, 156, 296, 374, 507
CspAI ACCGGT 1 cut(s) 1032
CviAII CATG 6 cut(s) 398, 555, 748, 865, 955, 1159
CviQI GTAC 5 cut(s) 60, 156, 296, 374, 507
DdeI CTNAG 3 cut(s) 123, 173, 258
DpnI GATC 2 cut(s) 743, 1148
DpnII GATC 2 cut(s) 741, 1146
DrdI GACNNNNNNGTC 1 cut(s) 868
DseDI GACNNNNNNGTC 1 cut(s) 868
EaeI YGGCCR 3 cut(s) 981, 985, 1203
EagI CGGCCG 1 cut(s) 985
Eam1104I CTCTTC 4 cut(s) 202, 415, 423, 483
EarI CTCTTC 4 cut(s) 202, 415, 423, 483
EclXI CGGCCG 1 cut(s) 985
Eco31I GGTCTC 1 cut(s) 740
Eco47I GGWCC 1 cut(s) 575
Eco52I CGGCCG 1 cut(s) 985
Eco57I CTGAAG 2 cut(s) 75, 1219
Eco88I CYCGRG 1 cut(s) 1086
Eco91I GGTNACC 1 cut(s) 859
EcoO109I RGGNCCY 2 cut(s) 410, 575
EcoO65I GGTNACC 1 cut(s) 859
EcoRII CCWGG 3 cut(s) 412, 454, 978
EcoT22I ATGCAT 1 cut(s) 639
FaeI CATG 6 cut(s) 401, 558, 751, 868, 958, 1162
FaqI GGGAC 3 cut(s) 555, 561, 1058
FatI CATG 6 cut(s) 397, 554, 747, 864, 954, 1158
FblI GTMKAC 2 cut(s) 215, 451
Fnu4HI GCNGC 2 cut(s) 263, 819
FokI GGATG 4 cut(s) 287, 786, 981, 1188
FseI GGCCGGCC 1 cut(s) 987
Fsp4HI GCNGC 2 cut(s) 263, 819
FspBI CTAG 1 cut(s) 1092
GlaI GCGC 1 cut(s) 720
GluI GCNGC 2 cut(s) 263, 819
GsuI CTGGAG 1 cut(s) 660
HaeIII GGCC 5 cut(s) 359, 411, 983, 987, 1205
HapII CCGG 7 cut(s) 347, 686, 902, 984, 988, 1033, 1251
HhaI GCGC 1 cut(s) 721
Hin1II CATG 6 cut(s) 401, 558, 751, 868, 958, 1162
Hin6I GCGC 1 cut(s) 719
HinP1I GCGC 1 cut(s) 719
HincII GTYRAC 2 cut(s) 481, 873
HindII GTYRAC 2 cut(s) 481, 873
HinfI GANTC 3 cut(s) 533, 791, 1184
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 7 cut(s) 347, 686, 902, 984, 988, 1033, 1251
HphI GGTGA 4 cut(s) 145, 635, 871, 896
Hpy166II GTNNAC 6 cut(s) 158, 216, 376, 452, 481, 873
Hpy188I TCNGA 3 cut(s) 333, 470, 855
Hpy188III TCNNGA 3 cut(s) 644, 739, 955
Hpy8I GTNNAC 6 cut(s) 158, 216, 376, 452, 481, 873
HpyAV CCTTC 7 cut(s) 124, 230, 401, 560, 641, 835, 1156
HpyCH4III ACNGT 4 cut(s) 213, 765, 1210, 1297
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 5 cut(s) 254, 355, 637, 842, 1134
HpyF10VI GCNNNNNNNGC 2 cut(s) 667, 702
HpyF3I CTNAG 3 cut(s) 123, 173, 258
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 6 cut(s) 401, 558, 751, 868, 958, 1162
HspAI GCGC 1 cut(s) 719
KpnI GGTACC 2 cut(s) 299, 510
KroI GCCGGC 1 cut(s) 983
KroNI GCCGGC 1 cut(s) 985
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 2 cut(s) 741, 1146
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 3 cut(s) 613, 667, 815
Lsp1109I GCAGC 1 cut(s) 805
LweI GCATC 4 cut(s) 624, 705, 829, 948
MabI ACCWGGT 1 cut(s) 454
MaeI CTAG 1 cut(s) 1092
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 4 cut(s) 185, 623, 859, 884
MalI GATC 2 cut(s) 743, 1148
MboI GATC 2 cut(s) 741, 1146
MboII GAAGA 8 cut(s) 189, 352, 429, 432, 440, 500, 800, 1120
MlsI TGGCCA 1 cut(s) 1205
MluCI AATT 4 cut(s) 142, 387, 606, 1168
MluNI TGGCCA 1 cut(s) 1205
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 252
Mox20I TGGCCA 1 cut(s) 1205
Mph1103I ATGCAT 1 cut(s) 639
MroNI GCCGGC 1 cut(s) 983
MroXI GAANNNNTTC 1 cut(s) 1034
MscI TGGCCA 1 cut(s) 1205
MseI TTAA 5 cut(s) 390, 480, 992, 1041, 1302
MslI CAYNNNNRTG 2 cut(s) 621, 632
Msp20I TGGCCA 1 cut(s) 1205
MspI CCGG 7 cut(s) 347, 686, 902, 984, 988, 1033, 1251
MspR9I CCNGG 4 cut(s) 414, 456, 980, 1251
MvaI CCWGG 3 cut(s) 414, 456, 980
MvnI CGCG 1 cut(s) 1310
MwoI GCNNNNNNNGC 2 cut(s) 667, 702
NaeI GCCGGC 1 cut(s) 985
NciI CCSGG 1 cut(s) 1251
NdeII GATC 2 cut(s) 741, 1146
NgoMIV GCCGGC 1 cut(s) 983
NlaIII CATG 6 cut(s) 401, 558, 751, 868, 958, 1162
NlaIV GGNNCC 5 cut(s) 297, 508, 577, 669, 1031
NmuCI GTSAC 4 cut(s) 185, 623, 859, 884
NsiI ATGCAT 1 cut(s) 639
PagI TCATGA 1 cut(s) 954
PaqCI CACCTGC 1 cut(s) 1248
PciSI GCTCTTC 1 cut(s) 423
PdiI GCCGGC 1 cut(s) 985
PdmI GAANNNNTTC 1 cut(s) 1034
PfeI GAWTC 2 cut(s) 791, 1184
PflFI GACNNNGTC 1 cut(s) 865
PinAI ACCGGT 1 cut(s) 1032
PkrI GCNGC 2 cut(s) 264, 820
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
PpuMI RGGWCCY 1 cut(s) 575
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 3 cut(s) 412, 454, 978
PspEI GGTNACC 1 cut(s) 859
PspGI CCWGG 3 cut(s) 412, 454, 978
PspN4I GGNNCC 5 cut(s) 297, 508, 577, 669, 1031
PspPI GGNCC 2 cut(s) 410, 575
PspPPI RGGWCCY 1 cut(s) 575
PsyI GACNNNGTC 1 cut(s) 865
RigI GGCCGGCC 1 cut(s) 987
RsaI GTAC 5 cut(s) 61, 157, 297, 375, 508
RsaNI GTAC 5 cut(s) 60, 156, 296, 374, 507
RseI CAYNNNNRTG 2 cut(s) 621, 632
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 5 cut(s) 390, 480, 992, 1041, 1302
SatI GCNGC 2 cut(s) 263, 819
Sau3AI GATC 2 cut(s) 741, 1146
Sau96I GGNCC 2 cut(s) 410, 575
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 4 cut(s) 414, 456, 980, 1251
SexAI ACCWGGT 1 cut(s) 454
SfaNI GCATC 4 cut(s) 624, 705, 829, 948
SinI GGWCC 1 cut(s) 575
SmiMI CAYNNNNRTG 2 cut(s) 621, 632
Sse9I AATT 4 cut(s) 142, 387, 606, 1168
SsiI CCGC 3 cut(s) 262, 1112, 1332
SspMI CTAG 1 cut(s) 1092
StyD4I CCNGG 4 cut(s) 412, 454, 978, 1249
TaaI ACNGT 4 cut(s) 213, 765, 1210, 1297
TaiI ACGT 1 cut(s) 547
TasI AATT 4 cut(s) 142, 387, 606, 1168
TatI WGTACW 3 cut(s) 59, 155, 373
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 2 cut(s) 791, 1184
Tru1I TTAA 5 cut(s) 390, 480, 992, 1041, 1302
Tru9I TTAA 5 cut(s) 390, 480, 992, 1041, 1302
TscAI CASTG 5 cut(s) 99, 367, 720, 1213, 1300
TseFI GTSAC 4 cut(s) 185, 623, 859, 884
TseI GCWGC 1 cut(s) 818
Tsp45I GTSAC 4 cut(s) 185, 623, 859, 884
TspDTI ATGAA 5 cut(s) 236, 441, 579, 943, 1175
TspGWI ACGGA 1 cut(s) 526
TspRI CASTG 5 cut(s) 99, 367, 720, 1213, 1300
Tth111I GACNNNGTC 1 cut(s) 865
VpaK11BI GGWCC 1 cut(s) 575
XapI RAATTY 1 cut(s) 1168
XmiI GTMKAC 2 cut(s) 215, 451
XmnI GAANNNNTTC 1 cut(s) 1034
XspI CTAG 1 cut(s) 1092
Zsp2I ATGCAT 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.