Rroxscaffold_6G00411530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014761
Physical Location & Seq
Reverse (-)
34077682 .. 34078853
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411530.1

Sequence Viewer

Length: 606 bp
ATGATGAGAATGTTCATGCATAATGACCACGTAATAGACATAGTGGAAATACAGGATGAGCAGAACTCGGATGAGGAAGAGTTAGTGGAAATACAGGACGGGCATAACTCGGATGTGGATGAGAATGTTCAGGATGAAGTCATTTTGGAAATTGAAAATGATGTGGAAGTTGGGCTCGGGGCATGCAGAAATCCCAGAAGAATTATTGTGAAGTTGATGGGTAGAGTTGAGCATGTGGAATGTGCTTACGCCTGGCTTCATGAGGAAGGTAGACAAGTTCCATTCAACAATGGTATGCTTTCTTGGCAGCTAGATGAAGAACTAAGAATACGGTTTTTGGAGGGAGGGACAGGAATAGCTTTGTTGGCATACTGGGTTTTTGGGACGCTATTTTACTACTCTATGGTGGCAGAGAGAAAGTCGCTACGGTATCAACTGTTGGATTTGGGGATCTCTATTACTCGTCTCGGCGTGGAAGGCGATTTGCGGCATATTGGATTTCAGTTGGCACTACCCTCGTTGATCTCGCATTCGGATACCTGTCGCAGCGCGGCTATGGAGCTTGAAACTGCAGGTGTGGAGTTGCATACAGATGCGAAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.98

Weight (kDa)

4.57

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 563
Acc36I ACCTGC 1 cut(s) 563
AccI GTMKAC 1 cut(s) 271
AccII CGCG 1 cut(s) 551
AciI CCGC 2 cut(s) 487, 551
AclWI GGATC 1 cut(s) 458
AgsI TTSAA 3 cut(s) 155, 286, 566
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 3 cut(s) 310, 359, 562
AluI AGCT 3 cut(s) 310, 359, 562
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 176
ApeKI GCWGC 2 cut(s) 307, 546
AspLEI GCGC 1 cut(s) 551
AvaI CYCGRG 1 cut(s) 176
BanII GRGCYC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 319, 558
BccI CCATC 1 cut(s) 211
BcgI CGANNNNNNTGC 2 cut(s) 498, 532
BciT130I CCWGG 1 cut(s) 253
BciVI GTATCC 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 570
BfuAI ACCTGC 1 cut(s) 563
BfuI GTATCC 1 cut(s) 529
BisI GCNGC 4 cut(s) 308, 488, 547, 552
BlsI GCNGC 4 cut(s) 309, 489, 548, 553
Bme1390I CCNGG 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 253
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 583
BmuI ACTGGG 1 cut(s) 382
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BsaAI YACGTR 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 253
BseGI GGATG 5 cut(s) 61, 76, 118, 124, 139
BseNI ACTGG 1 cut(s) 377
BseXI GCAGC 2 cut(s) 319, 558
Bsh1236I CGCG 1 cut(s) 551
BsiHKCI CYCGRG 1 cut(s) 176
BslFI GGGAC 2 cut(s) 361, 397
BsmAI GTCTC 1 cut(s) 470
BsmBI CGTCTC 1 cut(s) 470
BsmFI GGGAC 2 cut(s) 361, 397
BsmI GAATGC 1 cut(s) 529
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 2 cut(s) 450, 522
BspACI CCGC 2 cut(s) 487, 551
BspFNI CGCG 1 cut(s) 551
BspHI TCATGA 1 cut(s) 259
BspMAI CTGCAG 1 cut(s) 574
BspMI ACCTGC 1 cut(s) 563
BspPI GGATC 1 cut(s) 458
BsrI ACTGG 1 cut(s) 377
BssMI GATC 2 cut(s) 450, 522
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 3 cut(s) 333, 429, 438
Bst6I CTCTTC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 323
BstF5I GGATG 5 cut(s) 61, 76, 118, 124, 139
BstFNI CGCG 1 cut(s) 551
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 2 cut(s) 453, 525
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 2 cut(s) 450, 522
BstMWI GCNNNNNNNGC 3 cut(s) 304, 365, 477
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 2 cut(s) 186, 236
BstSCI CCNGG 1 cut(s) 251
BstSFI CTRYAG 1 cut(s) 570
BstUI CGCG 1 cut(s) 551
BstV1I GCAGC 2 cut(s) 319, 558
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
BsuI GTATCC 1 cut(s) 529
BtsCI GGATG 5 cut(s) 61, 76, 118, 124, 139
BveI ACCTGC 1 cut(s) 563
Cac8I GCNNGC 1 cut(s) 184
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 551
CseI GACGC 1 cut(s) 394
CviAII CATG 4 cut(s) 16, 183, 233, 260
CviJI RGCY 6 cut(s) 175, 256, 310, 359, 554, 562
CviKI_1 RGCY 6 cut(s) 175, 256, 310, 359, 554, 562
DdeI CTNAG 1 cut(s) 323
DpnI GATC 2 cut(s) 452, 524
DpnII GATC 2 cut(s) 450, 522
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 251
EcoT22I ATGCAT 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 470
FaeI CATG 4 cut(s) 19, 186, 236, 263
FaqI GGGAC 2 cut(s) 361, 397
FatI CATG 4 cut(s) 15, 182, 232, 259
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 4 cut(s) 308, 488, 547, 552
FokI GGATG 5 cut(s) 68, 83, 125, 131, 146
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 4 cut(s) 308, 488, 547, 552
FspBI CTAG 1 cut(s) 311
GlaI GCGC 1 cut(s) 550
GluI GCNGC 4 cut(s) 308, 488, 547, 552
HgaI GACGC 1 cut(s) 394
HhaI GCGC 1 cut(s) 551
Hin1II CATG 4 cut(s) 19, 186, 236, 263
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 3 cut(s) 70, 112, 535
Hpy188III TCNNGA 2 cut(s) 131, 260
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 260, 470
HpyCH4III ACNGT 3 cut(s) 333, 429, 438
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 4 cut(s) 19, 186, 572, 586
HpyF10VI GCNNNNNNNGC 3 cut(s) 304, 365, 477
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 4 cut(s) 19, 186, 236, 263
HspAI GCGC 1 cut(s) 549
Kzo9I GATC 2 cut(s) 450, 522
LmnI GCTCC 1 cut(s) 559
Lsp1109I GCAGC 2 cut(s) 319, 558
LweI GCATC 1 cut(s) 583
MaeI CTAG 1 cut(s) 311
MaeII ACGT 1 cut(s) 30
MalI GATC 2 cut(s) 452, 524
MboI GATC 2 cut(s) 450, 522
MboII GAAGA 3 cut(s) 89, 210, 329
MflI RGATCY 1 cut(s) 450
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 150, 201
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 5 cut(s) 67, 256, 334, 338, 526
Mph1103I ATGCAT 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 591
MspR9I CCNGG 1 cut(s) 253
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 551
MwoI GCNNNNNNNGC 3 cut(s) 304, 365, 477
NdeII GATC 2 cut(s) 450, 522
NlaIII CATG 4 cut(s) 19, 186, 236, 263
NmeAIII GCCGAG 1 cut(s) 447
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 2 cut(s) 186, 236
PaeI GCATGC 1 cut(s) 186
PagI TCATGA 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 563
PctI GAATGC 1 cut(s) 529
PkrI GCNGC 4 cut(s) 309, 489, 548, 553
Ppu21I YACGTR 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PsrI GAACNNNNNNTAC 2 cut(s) 312, 344
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 1 cut(s) 450
RseI CAYNNNNRTG 1 cut(s) 591
SatI GCNGC 4 cut(s) 308, 488, 547, 552
Sau3AI GATC 2 cut(s) 450, 522
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 1 cut(s) 177
SetI ASST 7 cut(s) 33, 271, 312, 361, 542, 564, 577
SfaNI GCATC 1 cut(s) 583
SfcI CTRYAG 1 cut(s) 570
SmiMI CAYNNNNRTG 1 cut(s) 591
SphI GCATGC 1 cut(s) 186
Sse9I AATT 2 cut(s) 150, 201
SsiI CCGC 2 cut(s) 487, 551
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 251
TaaI ACNGT 3 cut(s) 333, 429, 438
TaiI ACGT 1 cut(s) 33
TasI AATT 2 cut(s) 150, 201
TauI GCSGC 2 cut(s) 490, 554
TseI GCWGC 2 cut(s) 307, 546
TspDTI ATGAA 4 cut(s) 4, 150, 248, 330
XceI RCATGY 2 cut(s) 186, 236
XmiI GTMKAC 1 cut(s) 271
XspI CTAG 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.