Rh3DG198500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014761
Physical Location & Seq
Forward (+)
17913262 .. 17914434
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG198500.1

Sequence Viewer

Length: 1173 bp
ATGAGAAGTTTAAATAACCAAAACCAAGGTTCGGGGTCTTCCGGGGTGAAGAAAAACTCGGGGACAAAGAAGCTGTGGAACATGATAAGAAAGAAAAAGTCCAGTCATTCAGGTTCTCCCAGGGTGAAGAAAGACTCGAGGATAAAGAAACTATGGAACATGGTGAGGAAGAAAAAGGTTAATCAGTCTGGTTTAAATGCAGCAGGGAATGTTGATGAGTTCAGGTCAAATGTAGATAATGACGATCTTCATAACAATGAGGAAATACAAGAGGTGCATAACAATGTGGAAATAGCAGGGCTGCAGAACGATGACAATGTGGAAATAGCAGGGCTGCATGGCAGGGTGCAGAACGATGTTGGTTACCTGGATGATGAGAATGTTCACAATGACAATCTTCATAACAATGTGGAAATACCAGAGGTGCAGAACGATGCTGGTAACTTGGATGAGAATGTTCACAATGACCACGTAATAGACATAGTGGAAATACAGGATGAGCAGAACTCGGATGAGGATGAGATAGTGGAAATGCAGGACAGGCATAACTCGGATGTGGATGAGAATGTTCAGGATGAAGTCATTTTGGAAATTGAAAATGATGTGGAGGTTGGGCTCGGGGCATGCAGAAATCCCAGAAGAATTATTGTGAAGTTGATGGGTAGAGTTGAGCATGTGGAATGTGCTTACGCCTGGCTTCATGAGGAAGGTAGACAAATTCCATTCAACAATGGTATGCTTTCTTGGCAGCTAGATGAAGAACTAAGAATACGGTTTTCGGAGGGAGGGGTACCTGCTCGGATAGATGATCTTGTTCCAGCAATGCGAGCGGGCTTCATCACTCGGGCATTGCCTTATATTCTGCAGACAGGAATAGCTTTGTTGGCATACTGTGTTTTTGGGAAGCTATTTTACTACTCTATGGTGGCAAAGAAAGGTATAAAAGGAGCTACTGAATACAAGGCAGTAGATGCCCATTATTTTCTTATGGTGACTCTGTCATCTACAGGATATGGTGATATCTCTGCCTCAAAGGATTCTACCCTTGCCAAAAGTGATCTGCTTTATGATGCTGATAGGGTGTGGTTTTGTTGCTGGTCGATTATCCGCCCTATTCAACTTTTTCGGCAATGCTCTTGGCAACTGGGTTTTCGGATACATGGGCCGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

390

Amino Acids

44.18

Weight (kDa)

5.29

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 293 - 345 3.9e-06 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 802
Acc65I GGTACC 1 cut(s) 790
AccB1I GGYRCC 1 cut(s) 790
AccBSI CCGCTC 1 cut(s) 830
AccI GTMKAC 1 cut(s) 712
AciI CCGC 2 cut(s) 830, 1108
AcsI RAATTY 1 cut(s) 717
AfaI GTAC 1 cut(s) 792
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 3 cut(s) 596, 727, 1118
AjnI CCWGG 3 cut(s) 119, 366, 692
AluBI AGCT 5 cut(s) 73, 751, 878, 907, 950
AluI AGCT 5 cut(s) 73, 751, 878, 907, 950
Ama87I CYCGRG 4 cut(s) 58, 136, 617, 843
AoxI GGCC 1 cut(s) 1163
ApeKI GCWGC 4 cut(s) 200, 301, 334, 748
ApoI RAATTY 1 cut(s) 717
Asp718I GGTACC 1 cut(s) 790
AspS9I GGNCC 1 cut(s) 1163
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 5 cut(s) 58, 136, 175, 1003, 1028
AvaI CYCGRG 4 cut(s) 58, 136, 617, 843
BanI GGYRCC 1 cut(s) 790
BanII GRGCYC 1 cut(s) 618
BarI GAAGNNNNNNTAC 2 cut(s) 896, 928
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 4 cut(s) 212, 288, 321, 760
BccI CCATC 1 cut(s) 652
BciT130I CCWGG 3 cut(s) 121, 368, 694
BciVI GTATCC 1 cut(s) 1149
BcnI CCSGG 1 cut(s) 43
BfaI CTAG 1 cut(s) 752
BfmI CTRYAG 3 cut(s) 302, 863, 1005
BfuAI ACCTGC 1 cut(s) 802
BfuI GTATCC 1 cut(s) 1149
BisI GCNGC 4 cut(s) 201, 302, 335, 749
BlsI GCNGC 4 cut(s) 202, 303, 336, 750
Bme1390I CCNGG 4 cut(s) 43, 121, 368, 694
BmeT110I CYCGRG 4 cut(s) 58, 136, 617, 843
BmgT120I GGNCC 1 cut(s) 1163
BmiI GGNNCC 1 cut(s) 792
BmrFI CCNGG 4 cut(s) 43, 121, 368, 694
BmrI ACTGGG 1 cut(s) 1154
BmsI GCATC 3 cut(s) 424, 961, 1060
BmuI ACTGGG 1 cut(s) 1154
BpiI GAAGAC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 491, 523
BpuMI CCSGG 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 472
BsaJI CCNNGG 4 cut(s) 25, 42, 119, 120
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 2 cut(s) 102, 1149
Bse3DI GCAATG 3 cut(s) 828, 848, 1136
BseBI CCWGG 3 cut(s) 121, 368, 694
BseDI CCNNGG 4 cut(s) 25, 42, 119, 120
BseGI GGATG 8 cut(s) 376, 454, 502, 517, 523, 559, 565, 580
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMI GCAATG 3 cut(s) 828, 848, 1136
BseNI ACTGG 2 cut(s) 102, 1149
BseXI GCAGC 4 cut(s) 212, 288, 321, 760
BsgI GTGCAG 2 cut(s) 368, 446
BshFI GGCC 1 cut(s) 1165
BshNI GGYRCC 1 cut(s) 790
BsiHKCI CYCGRG 4 cut(s) 58, 136, 617, 843
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 1 cut(s) 1165
BsoBI CYCGRG 4 cut(s) 58, 136, 617, 843
Bsp1286I GDGCHC 1 cut(s) 618
Bsp143I GATC 3 cut(s) 244, 808, 1057
BspACI CCGC 2 cut(s) 830, 1108
BspANI GGCC 1 cut(s) 1165
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 1 cut(s) 792
BspMAI CTGCAG 2 cut(s) 306, 867
BspMI ACCTGC 1 cut(s) 802
BspT107I GGYRCC 1 cut(s) 790
BsrBI CCGCTC 1 cut(s) 830
BsrDI GCAATG 3 cut(s) 828, 848, 1136
BsrI ACTGG 2 cut(s) 102, 1149
BssECI CCNNGG 4 cut(s) 25, 42, 119, 120
BssMI GATC 3 cut(s) 244, 808, 1057
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 3 cut(s) 121, 368, 694
Bst4CI ACNGT 2 cut(s) 774, 893
BstAPI GCANNNNNTGC 1 cut(s) 971
BstBAI YACGTR 1 cut(s) 472
BstC8I GCNNGC 3 cut(s) 625, 828, 832
BstDEI CTNAG 1 cut(s) 764
BstEII GGTNACC 1 cut(s) 362
BstF5I GGATG 8 cut(s) 376, 454, 502, 517, 523, 559, 565, 580
BstKTI GATC 3 cut(s) 247, 811, 1060
BstMBI GATC 3 cut(s) 244, 808, 1057
BstMWI GCNNNNNNNGC 5 cut(s) 541, 745, 827, 884, 971
BstNI CCWGG 3 cut(s) 121, 368, 694
BstNSI RCATGY 2 cut(s) 627, 677
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 4 cut(s) 41, 119, 366, 692
BstSFI CTRYAG 3 cut(s) 302, 863, 1005
BstV1I GCAGC 4 cut(s) 212, 288, 321, 760
BstV2I GAAGAC 1 cut(s) 30
BsuI GTATCC 1 cut(s) 1149
BsuRI GGCC 1 cut(s) 1165
BtsCI GGATG 8 cut(s) 376, 454, 502, 517, 523, 559, 565, 580
BveI ACCTGC 1 cut(s) 802
Cac8I GCNNGC 3 cut(s) 625, 828, 832
CciI TCATGA 1 cut(s) 700
Cfr13I GGNCC 1 cut(s) 1163
Csp6I GTAC 1 cut(s) 791
CviAII CATG 7 cut(s) 82, 160, 338, 624, 674, 701, 1160
CviQI GTAC 1 cut(s) 791
DdeI CTNAG 1 cut(s) 764
DpnI GATC 3 cut(s) 246, 810, 1059
DpnII GATC 3 cut(s) 244, 808, 1057
DraI TTTAAA 2 cut(s) 12, 195
EciI GGCGGA 1 cut(s) 1097
Eco130I CCWWGG 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 618
Eco32I GATATC 1 cut(s) 1021
Eco88I CYCGRG 4 cut(s) 58, 136, 617, 843
Eco91I GGTNACC 1 cut(s) 362
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 3 cut(s) 119, 366, 692
EcoRV GATATC 1 cut(s) 1021
EcoT14I CCWWGG 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 618
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 7 cut(s) 85, 163, 341, 627, 677, 704, 1163
FaqI GGGAC 1 cut(s) 76
FatI CATG 7 cut(s) 81, 159, 337, 623, 673, 700, 1159
FauI CCCGC 1 cut(s) 823
FblI GTMKAC 1 cut(s) 712
Fnu4HI GCNGC 4 cut(s) 201, 302, 335, 749
FokI GGATG 8 cut(s) 383, 461, 509, 524, 530, 566, 572, 587
FriOI GRGCYC 1 cut(s) 618
Fsp4HI GCNGC 4 cut(s) 201, 302, 335, 749
FspBI CTAG 1 cut(s) 752
GluI GCNGC 4 cut(s) 201, 302, 335, 749
HaeIII GGCC 1 cut(s) 1165
HapII CCGG 1 cut(s) 42
Hin1II CATG 7 cut(s) 85, 163, 341, 627, 677, 704, 1163
HinfI GANTC 3 cut(s) 134, 994, 1037
HpaII CCGG 1 cut(s) 42
HphI GGTGA 5 cut(s) 58, 136, 175, 1003, 1028
Hpy166II GTNNAC 3 cut(s) 385, 460, 713
Hpy188I TCNGA 5 cut(s) 511, 553, 781, 801, 1155
Hpy188III TCNNGA 2 cut(s) 572, 701
Hpy8I GTNNAC 3 cut(s) 385, 460, 713
Hpy99I CGWCG 1 cut(s) 1171
HpyAV CCTTC 1 cut(s) 701
HpyCH4III ACNGT 2 cut(s) 774, 893
HpyCH4IV ACGT 2 cut(s) 471, 1169
HpyCH4V TGCA 9 cut(s) 200, 277, 304, 337, 349, 427, 535, 627, 865
HpyF10VI GCNNNNNNNGC 5 cut(s) 541, 745, 827, 884, 971
HpyF3I CTNAG 1 cut(s) 764
HpySE526I ACGT 2 cut(s) 471, 1169
Hsp92II CATG 7 cut(s) 85, 163, 341, 627, 677, 704, 1163
KpnI GGTACC 1 cut(s) 794
Kzo9I GATC 3 cut(s) 244, 808, 1057
LmnI GCTCC 1 cut(s) 947
Lsp1109I GCAGC 4 cut(s) 212, 288, 321, 760
LweI GCATC 3 cut(s) 424, 961, 1060
MaeI CTAG 1 cut(s) 752
MaeII ACGT 2 cut(s) 471, 1169
MaeIII GTNAC 3 cut(s) 362, 440, 991
MalI GATC 3 cut(s) 246, 810, 1059
MbiI CCGCTC 1 cut(s) 830
MboI GATC 3 cut(s) 244, 808, 1057
MboII GAAGA 8 cut(s) 30, 61, 139, 181, 239, 389, 651, 770
MhlI GDGCHC 1 cut(s) 618
MluCI AATT 3 cut(s) 591, 642, 717
MlyI GAGTC 2 cut(s) 128, 988
MseI TTAA 3 cut(s) 11, 180, 194
MslI CAYNNNNRTG 3 cut(s) 255, 282, 405
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 4 cut(s) 43, 121, 368, 694
MvaI CCWGG 3 cut(s) 121, 368, 694
MwoI GCNNNNNNNGC 5 cut(s) 541, 745, 827, 884, 971
NciI CCSGG 1 cut(s) 43
NdeII GATC 3 cut(s) 244, 808, 1057
NlaIII CATG 7 cut(s) 85, 163, 341, 627, 677, 704, 1163
NlaIV GGNNCC 1 cut(s) 792
NmuCI GTSAC 1 cut(s) 991
NspI RCATGY 2 cut(s) 627, 677
PaeI GCATGC 1 cut(s) 627
PaeR7I CTCGAG 1 cut(s) 136
PagI TCATGA 1 cut(s) 700
PasI CCCWGGG 1 cut(s) 120
PfeI GAWTC 1 cut(s) 1037
PflFI GACNNNGTC 1 cut(s) 997
PkrI GCNGC 4 cut(s) 202, 303, 336, 750
PleI GAGTC 2 cut(s) 128, 988
PpsI GAGTC 2 cut(s) 128, 988
Ppu21I YACGTR 1 cut(s) 472
Psp6I CCWGG 3 cut(s) 119, 366, 692
PspEI GGTNACC 1 cut(s) 362
PspGI CCWGG 3 cut(s) 119, 366, 692
PspN4I GGNNCC 1 cut(s) 792
PspPI GGNCC 1 cut(s) 1163
PspXI VCTCGAGB 1 cut(s) 136
PsrI GAACNNNNNNTAC 2 cut(s) 753, 785
PstI CTGCAG 2 cut(s) 306, 867
PsyI GACNNNGTC 1 cut(s) 997
RsaI GTAC 1 cut(s) 792
RsaNI GTAC 1 cut(s) 791
RseI CAYNNNNRTG 3 cut(s) 255, 282, 405
SaqAI TTAA 3 cut(s) 11, 180, 194
SatI GCNGC 4 cut(s) 201, 302, 335, 749
Sau3AI GATC 3 cut(s) 244, 808, 1057
Sau96I GGNCC 1 cut(s) 1163
SchI GAGTC 2 cut(s) 128, 988
ScrFI CCNGG 4 cut(s) 43, 121, 368, 694
SduI GDGCHC 1 cut(s) 618
SfaNI GCATC 3 cut(s) 424, 961, 1060
SfcI CTRYAG 3 cut(s) 302, 863, 1005
Sfr274I CTCGAG 1 cut(s) 136
SlaI CTCGAG 1 cut(s) 136
SmiMI CAYNNNNRTG 3 cut(s) 255, 282, 405
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
SphI GCATGC 1 cut(s) 627
Sse9I AATT 3 cut(s) 591, 642, 717
SsiI CCGC 2 cut(s) 830, 1108
SspMI CTAG 1 cut(s) 752
StyD4I CCNGG 4 cut(s) 41, 119, 366, 692
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 2 cut(s) 774, 893
TaiI ACGT 2 cut(s) 474, 1172
TaqI TCGA 2 cut(s) 137, 1100
TasI AATT 3 cut(s) 591, 642, 717
TfiI GAWTC 1 cut(s) 1037
Tru1I TTAA 3 cut(s) 11, 180, 194
Tru9I TTAA 3 cut(s) 11, 180, 194
TseFI GTSAC 1 cut(s) 991
TseI GCWGC 4 cut(s) 200, 301, 334, 748
Tsp45I GTSAC 1 cut(s) 991
TspDTI ATGAA 6 cut(s) 239, 389, 591, 689, 771, 826
Tth111I GACNNNGTC 1 cut(s) 997
XapI RAATTY 1 cut(s) 717
XceI RCATGY 2 cut(s) 627, 677
XhoI CTCGAG 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 712
XspI CTAG 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.