Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0014761

Physical Location & Seq

Genomic Coordinates Reverse (-)

14504700 .. 14509670

Gene Structure 4971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G014420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGAGAAGTTTAAATAACCAAAACCAAGGTTCGGGGTCTTCCGGGGTGAAGAAAAACTCGGGGATAAAGAAGCTGTGGAACATGATAAGAAAGAAAAAGTCTAGTCATTCAGGTTCTCCCAGGGTGAAGAAAGACTCGAGGATAAAGAAACTATGGAACATGGTGAGGAAGAAAAAGGTTAATCAGTCTGGTTTAAATGCAGCAGGGAATGTTGATGAGTTCAGGTCAAATGTAGATAATGACGATCTTCATAACAATGAGGAAATACAAGAGGTGCATAACAATGTGGAAATAGCAGGGCTGCATGGCAGGGTGCAGAACGATGTTGGTTACCTGGATGATGAGAATGTTCACAATGACAATCTTCATAACAATGTGGAAATACCAGAGGTGCAGAACGATGCTGGTAACTTGGATGAGAATGTTCACAATGACCACGTAATAGACATAGTGGAAATACAGGATGAGCAGAACTCGGATGAGGATGAGATAGTGGAAATGCAGGACAGGCATAACTCGGATGTGGATGAGAATGTTCAGGATGAAGTCATTTTGGAAATTGAAAATGATGTGGAAGTTGGGCTCGGGGCATGCAGAAATCCCAGAAGAATTATTGTGAAGTTGATGGGTAGAGTTGAGCATGTGGAATGTGCTTACGCCTGGCTTCATGAGGAAGGTAGACAAATTCCATTCAACACTGGTATGCTTTCTTGGCAGCTAGATGAAGAACTAAGAATACGGTTTTCGGAGGGAGGGGTACCTGCTCGGATAGATGATCTTGTTCCAGCAATGCGAACAGGAATAGCTTTGTTGGCATACTGTGTTTTTGGGAAGCTATTTTACTACTCTATGGTGGCAAAGAAAGGTATAAAAGGAGCTACTGAATACAATGCAGTAGATGCCCATTATTTTCTTATGGTGACTATGTCATCTACAGGATATGGTGATATCTCTGCCTCAAAGGATTCTACCCTTGCCAAAATAGTGATCTGCTTTATGATGCTGATAGGGTGTGGTTTTGTTGCTGGTCGATTATCCGCCCTATTCAACTTTTTCGGCAATGCTCTTGGCAACTGGGTTTTCGGATACATGGGTCGACGTAGGGGTCAACCAATACAGGAAAGCTCTAGGGTAAGATATAGGGTCTGCTTTGCAATAGCGGTAGTGGCTCTTTCTATTGGGTTTGGTATCATTGGGGGCAAGAATGAAGGAATGGGATGGCTTGATTCCATTTACTTCTCAGTCGCTACAGTATCATCTGTTGGATTTGGGGATGTCTATTACTCGTCTCAGCGTGGAAGGAAATTTGCGGCGTATTGGATTCCAGTTGGCACTACCCTCGTTGATCTCGCATTCGGATACCTGTCGCAGCGCGGCTATGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

462

Amino Acids

51.58

Weight (kDa)

5.79

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans_2	PF07885	269 - 352	1.7e-10	Ion channel
Ion_trans_2	PF07885	388 - 456	5.3e-10	Ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014761)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15980
rosa_chinensis	RchiOBHm_Chr4g0407831
rosa_laevigata	RLG00000008695 RLG00000024328
rosa_multiflora	Rmu_sc0000289.1_g000004 Rmu_sc0003573.1_g000038
rosa_roxburghii	Rroxscaffold_5G00352400 Rroxscaffold_6G00411530
rosa_rugosa	Rorug04G0081700
rosa_samantha	Rh3DG198500 Rh3DG198600 Rh4AG146700 Rh4BG144200 Rh4CG153200 Rh4DG140700
rosa_wichuraiana	Rw3G014420 Rw4G012040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1104
Acc36I	ACCTGC	1 cut(s)	769
Acc65I	GGTACC	1 cut(s)	757
AccB1I	GGYRCC	1 cut(s)	757
AccI	GTMKAC	2 cut(s)	679, 1096
AccII	CGCG	1 cut(s)	1374
AciI	CCGC	4 cut(s)	1038, 1160, 1310, 1374
AcsI	RAATTY	2 cut(s)	684, 1304
AfaI	GTAC	1 cut(s)	759
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	3 cut(s)	563, 694, 1048
AjnI	CCWGG	3 cut(s)	119, 333, 659
AluBI	AGCT	7 cut(s)	73, 718, 806, 835, 878, 1125, 1385
AluI	AGCT	7 cut(s)	73, 718, 806, 835, 878, 1125, 1385
Alw26I	GTCTC	1 cut(s)	1293
Ama87I	CYCGRG	3 cut(s)	58, 136, 584
ApeKI	GCWGC	4 cut(s)	200, 301, 715, 1369
ApoI	RAATTY	2 cut(s)	684, 1304
Asp718I	GGTACC	1 cut(s)	757
AspLEI	GCGC	1 cut(s)	1374
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	5 cut(s)	58, 136, 175, 931, 956
AvaI	CYCGRG	3 cut(s)	58, 136, 584
BaeI	ACNNNNGTAYC	2 cut(s)	1078, 1111
BanI	GGYRCC	1 cut(s)	757
BanII	GRGCYC	1 cut(s)	585
BarI	GAAGNNNNNNTAC	2 cut(s)	824, 856
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	4 cut(s)	212, 288, 727, 1381
BccI	CCATC	2 cut(s)	619, 1212
BcgI	CGANNNNNNTGC	2 cut(s)	1321, 1355
BciT130I	CCWGG	3 cut(s)	121, 335, 661
BciVI	GTATCC	2 cut(s)	1079, 1352
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	1293
BfaI	CTAG	3 cut(s)	102, 719, 1128
BfmI	CTRYAG	2 cut(s)	933, 1248
BfuAI	ACCTGC	1 cut(s)	769
BfuI	GTATCC	2 cut(s)	1079, 1352
BisI	GCNGC	6 cut(s)	201, 302, 716, 1311, 1370, 1375
BlsI	GCNGC	6 cut(s)	202, 303, 717, 1312, 1371, 1376
Bme1390I	CCNGG	4 cut(s)	43, 121, 335, 661
BmeT110I	CYCGRG	3 cut(s)	58, 136, 584
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	4 cut(s)	43, 121, 335, 661
BmrI	ACTGGG	1 cut(s)	1084
BmsI	GCATC	3 cut(s)	391, 889, 990
BmuI	ACTGGG	1 cut(s)	1084
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpuMI	CCSGG	1 cut(s)	43
BsaAI	YACGTR	1 cut(s)	439
BsaJI	CCNNGG	4 cut(s)	25, 42, 119, 120
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	3 cut(s)	703, 1079, 1325
Bse3DI	GCAATG	2 cut(s)	795, 1066
BseBI	CCWGG	3 cut(s)	121, 335, 661
BseDI	CCNNGG	4 cut(s)	25, 42, 119, 120
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	2 cut(s)	795, 1066
BseMII	CTCAG	2 cut(s)	1254, 1304
BseNI	ACTGG	3 cut(s)	703, 1079, 1325
BseXI	GCAGC	4 cut(s)	212, 288, 727, 1381
BsgI	GTGCAG	2 cut(s)	335, 413
Bsh1236I	CGCG	1 cut(s)	1374
BshNI	GGYRCC	1 cut(s)	757
BsiHKCI	CYCGRG	3 cut(s)	58, 136, 584
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	1293
BsmBI	CGTCTC	1 cut(s)	1293
BsmI	GAATGC	1 cut(s)	1352
BsoBI	CYCGRG	3 cut(s)	58, 136, 584
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	4 cut(s)	244, 775, 987, 1345
BspACI	CCGC	4 cut(s)	1038, 1160, 1310, 1374
BspCNI	CTCAG	2 cut(s)	1253, 1303
BspFNI	CGCG	1 cut(s)	1374
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	1 cut(s)	759
BspMI	ACCTGC	1 cut(s)	769
BspT107I	GGYRCC	1 cut(s)	757
BsrDI	GCAATG	2 cut(s)	795, 1066
BsrI	ACTGG	3 cut(s)	703, 1079, 1325
BssECI	CCNNGG	4 cut(s)	25, 42, 119, 120
BssMI	GATC	4 cut(s)	244, 775, 987, 1345
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	3 cut(s)	121, 335, 661
Bst4CI	ACNGT	3 cut(s)	741, 821, 1252
BstAPI	GCANNNNNTGC	1 cut(s)	899
BstBAI	YACGTR	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	592
BstDEI	CTNAG	3 cut(s)	731, 1240, 1290
BstEII	GGTNACC	1 cut(s)	329
BstFNI	CGCG	1 cut(s)	1374
BstHHI	GCGC	1 cut(s)	1374
BstKTI	GATC	4 cut(s)	247, 778, 990, 1348
BstMAI	GTCTC	1 cut(s)	1293
BstMBI	GATC	4 cut(s)	244, 775, 987, 1345
BstMWI	GCNNNNNNNGC	5 cut(s)	508, 712, 812, 899, 1166
BstNI	CCWGG	3 cut(s)	121, 335, 661
BstNSI	RCATGY	2 cut(s)	594, 644
BstPI	GGTNACC	1 cut(s)	329
BstSCI	CCNGG	4 cut(s)	41, 119, 333, 659
BstSFI	CTRYAG	2 cut(s)	933, 1248
BstUI	CGCG	1 cut(s)	1374
BstV1I	GCAGC	4 cut(s)	212, 288, 727, 1381
BstV2I	GAAGAC	1 cut(s)	30
BsuI	GTATCC	2 cut(s)	1079, 1352
BtsIMutI	CAGTG	1 cut(s)	696
BveI	ACCTGC	1 cut(s)	769
Cac8I	GCNNGC	1 cut(s)	592
CciI	TCATGA	1 cut(s)	667
CfoI	GCGC	1 cut(s)	1374
Csp6I	GTAC	1 cut(s)	758
CviAII	CATG	7 cut(s)	82, 160, 305, 591, 641, 668, 1090
CviQI	GTAC	1 cut(s)	758
DdeI	CTNAG	3 cut(s)	731, 1240, 1290
DpnI	GATC	4 cut(s)	246, 777, 989, 1347
DpnII	GATC	4 cut(s)	244, 775, 987, 1345
DraI	TTTAAA	2 cut(s)	12, 195
DrdI	GACNNNNNNGTC	1 cut(s)	1104
DseDI	GACNNNNNNGTC	1 cut(s)	1104
EciI	GGCGGA	1 cut(s)	1027
Eco130I	CCWWGG	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	585
Eco32I	GATATC	1 cut(s)	949
Eco88I	CYCGRG	3 cut(s)	58, 136, 584
Eco91I	GGTNACC	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	329
EcoRII	CCWGG	3 cut(s)	119, 333, 659
EcoRV	GATATC	1 cut(s)	949
EcoT14I	CCWWGG	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	1293
FaeI	CATG	7 cut(s)	85, 163, 308, 594, 644, 671, 1093
FatI	CATG	7 cut(s)	81, 159, 304, 590, 640, 667, 1089
FblI	GTMKAC	2 cut(s)	679, 1096
Fnu4HI	GCNGC	6 cut(s)	201, 302, 716, 1311, 1370, 1375
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	6 cut(s)	201, 302, 716, 1311, 1370, 1375
FspBI	CTAG	3 cut(s)	102, 719, 1128
GlaI	GCGC	1 cut(s)	1373
GluI	GCNGC	6 cut(s)	201, 302, 716, 1311, 1370, 1375
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	1 cut(s)	1374
Hin1II	CATG	7 cut(s)	85, 163, 308, 594, 644, 671, 1093
Hin6I	GCGC	1 cut(s)	1372
HinP1I	GCGC	1 cut(s)	1372
HincII	GTYRAC	2 cut(s)	1097, 1109
HindII	GTYRAC	2 cut(s)	1097, 1109
HinfI	GANTC	4 cut(s)	134, 965, 1226, 1321
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	5 cut(s)	58, 136, 175, 931, 956
Hpy166II	GTNNAC	5 cut(s)	352, 427, 680, 1097, 1109
Hpy188I	TCNGA	6 cut(s)	478, 520, 748, 768, 1085, 1358
Hpy188III	TCNNGA	2 cut(s)	539, 668
Hpy8I	GTNNAC	5 cut(s)	352, 427, 680, 1097, 1109
Hpy99I	CGWCG	1 cut(s)	1101
HpyAV	CCTTC	3 cut(s)	668, 1202, 1293
HpyCH4III	ACNGT	3 cut(s)	741, 821, 1252
HpyCH4IV	ACGT	2 cut(s)	438, 1099
HpyCH4V	TGCA	9 cut(s)	200, 277, 304, 316, 394, 502, 594, 893, 1154
HpyF10VI	GCNNNNNNNGC	5 cut(s)	508, 712, 812, 899, 1166
HpyF3I	CTNAG	3 cut(s)	731, 1240, 1290
HpySE526I	ACGT	2 cut(s)	438, 1099
Hsp92II	CATG	7 cut(s)	85, 163, 308, 594, 644, 671, 1093
HspAI	GCGC	1 cut(s)	1372
KpnI	GGTACC	1 cut(s)	761
Kzo9I	GATC	4 cut(s)	244, 775, 987, 1345
LmnI	GCTCC	2 cut(s)	875, 1382
Lsp1109I	GCAGC	4 cut(s)	212, 288, 727, 1381
LweI	GCATC	3 cut(s)	391, 889, 990
MaeI	CTAG	3 cut(s)	102, 719, 1128
MaeII	ACGT	2 cut(s)	438, 1099
MaeIII	GTNAC	3 cut(s)	329, 407, 919
MalI	GATC	4 cut(s)	246, 777, 989, 1347
MboI	GATC	4 cut(s)	244, 775, 987, 1345
MboII	GAAGA	8 cut(s)	30, 61, 139, 181, 239, 356, 618, 737
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	4 cut(s)	558, 609, 684, 1304
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	1243
MseI	TTAA	3 cut(s)	11, 180, 194
MslI	CAYNNNNRTG	4 cut(s)	255, 282, 372, 701
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	4 cut(s)	43, 121, 335, 661
Mva1269I	GAATGC	1 cut(s)	1352
MvaI	CCWGG	3 cut(s)	121, 335, 661
MvnI	CGCG	1 cut(s)	1374
MwoI	GCNNNNNNNGC	5 cut(s)	508, 712, 812, 899, 1166
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	4 cut(s)	244, 775, 987, 1345
NlaIII	CATG	7 cut(s)	85, 163, 308, 594, 644, 671, 1093
NlaIV	GGNNCC	1 cut(s)	759
NmuCI	GTSAC	1 cut(s)	919
NspI	RCATGY	2 cut(s)	594, 644
PaeI	GCATGC	1 cut(s)	594
PaeR7I	CTCGAG	1 cut(s)	136
PagI	TCATGA	1 cut(s)	667
PasI	CCCWGGG	1 cut(s)	120
PctI	GAATGC	1 cut(s)	1352
PfeI	GAWTC	3 cut(s)	965, 1226, 1321
PflFI	GACNNNGTC	1 cut(s)	925
PkrI	GCNGC	6 cut(s)	202, 303, 717, 1312, 1371, 1376
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Ppu21I	YACGTR	1 cut(s)	439
Psp6I	CCWGG	3 cut(s)	119, 333, 659
PspEI	GGTNACC	1 cut(s)	329
PspGI	CCWGG	3 cut(s)	119, 333, 659
PspN4I	GGNNCC	1 cut(s)	759
PspXI	VCTCGAGB	1 cut(s)	136
PsrI	GAACNNNNNNTAC	2 cut(s)	720, 752
PsyI	GACNNNGTC	1 cut(s)	925
RsaI	GTAC	1 cut(s)	759
RsaNI	GTAC	1 cut(s)	758
RseI	CAYNNNNRTG	4 cut(s)	255, 282, 372, 701
SalI	GTCGAC	1 cut(s)	1095
SaqAI	TTAA	3 cut(s)	11, 180, 194
SatI	GCNGC	6 cut(s)	201, 302, 716, 1311, 1370, 1375
Sau3AI	GATC	4 cut(s)	244, 775, 987, 1345
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	4 cut(s)	43, 121, 335, 661
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	3 cut(s)	391, 889, 990
SfcI	CTRYAG	2 cut(s)	933, 1248
Sfr274I	CTCGAG	1 cut(s)	136
SlaI	CTCGAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	4 cut(s)	255, 282, 372, 701
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
SphI	GCATGC	1 cut(s)	594
Sse9I	AATT	4 cut(s)	558, 609, 684, 1304
SsiI	CCGC	4 cut(s)	1038, 1160, 1310, 1374
SspMI	CTAG	3 cut(s)	102, 719, 1128
StyD4I	CCNGG	4 cut(s)	41, 119, 333, 659
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	3 cut(s)	741, 821, 1252
TaiI	ACGT	2 cut(s)	441, 1102
TaqI	TCGA	3 cut(s)	137, 1030, 1096
TasI	AATT	4 cut(s)	558, 609, 684, 1304
TauI	GCSGC	2 cut(s)	1313, 1377
TfiI	GAWTC	3 cut(s)	965, 1226, 1321
Tru1I	TTAA	3 cut(s)	11, 180, 194
Tru9I	TTAA	3 cut(s)	11, 180, 194
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	1 cut(s)	919
TseI	GCWGC	4 cut(s)	200, 301, 715, 1369
Tsp45I	GTSAC	1 cut(s)	919
TspDTI	ATGAA	6 cut(s)	239, 356, 558, 656, 738, 1221
TspRI	CASTG	1 cut(s)	703
Tth111I	GACNNNGTC	1 cut(s)	925
XapI	RAATTY	2 cut(s)	684, 1304
XceI	RCATGY	2 cut(s)	594, 644
XhoI	CTCGAG	1 cut(s)	136
XmiI	GTMKAC	2 cut(s)	679, 1096
XspI	CTAG	3 cut(s)	102, 719, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.