RchiOBHm_Chr4g0407831

Potassium channel

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
30132039 .. 30134320
2282 bp
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UTR
Exon/CDS
Intron
PRQ37905

Sequence Viewer

Length: 1569 bp
ATGACAGGTGATAAAGATTTCCTGGCCAGAAAAAAAAAAAAAAAAACAGTTTCTGATGCTCCTGGGATGAAGAAAGCTCCTTTGTTAAAGAAACTGCTTAACAAAAGTGGCTCGTTATGGAAACTGTTTAACAAAAGTGGGTCTAATCCGGCTGAGAATGAAACTGACCAGTTGGGCTCAAATGAAGGGAGAGCATTTAACAATGAGGTTCGAATCGGAATCAATGAACCAGAGGTGATGCCTCACAGGAATGCTGTTCGAGAAGATGGGGGTTGTATGGATCAGAAGGTTAATAATGGTGCACCTGTTCAGGATATGGTTATTTTTAGCGGCGGTGTTCATCATCAGAGGCAGCAGCAAATTGAAAATAGTGGGGCAGATCATGTTGTTATCCATATTGAAGAAGGTGTGGTAGTTTGGGTTATAGTACCTAACATAATCCCGAGGCTGAATCTTGGAGCTGCGAACTTGGAACGCGCTTATTCATTGCTTTCTGTAGGAGGGATCATAACTCCATTTCACAATTTTATGAACTTCTGGCAGGGCAATGGTCAAGGATTGAGGCAGCAGCTCTACAATCTTATTCTGAGGCAGCAGCAGAATTATAATATTGGTGCACAGGGTGATAATGATTTTCACCAGCAACTAGTTCTGGACATTAAAGAAGCAGAAGGAGGAGTGGTAGGTGGGGGTAGGAGGATACCAAGGATCAGAGTGGCAGGTGGTGCTAGGAGGATACCAAGAATGATCCATGTGAGGTTGAGCGGTGGAGATGTGCCTGTCCATTCCACTTACGCATGGCTTTGTGAGAAAGGGCAATCAATTCCATTCAATGCTAGTGTGCATTCAGCGTATGGGTATGGTCAACAATCAATCTGGTTTGAGGAGGGAGGGCTTCCTCCGGCTGTTAAACCTTTTGCACCAGATACTGCAGACTTCCTCACCAAATCAAGTCCTTATTTCTGTCAGGGATTGATATCACTGGTCGTATTTTTCCTTGTTAGCTCACTACCGTACTTTTTCTTGAAGGGCTCAGGAGAAATAATTGGACCTAAAAATGATTCCAACGCCGACCCATTTTATTTCAGCATGGTCATAATGTCTTCCACAGGATACGGCGATATGTATCCCAAATCTACCCGTGCCAGACTGTTGACTTGCTTTTGGATACTTTTTGGTGTTGGAATTGTCGCTGGGCGATTAAGTACCGTGTTTAACTGCTTAGCCAATGCCTTTGGCAACCTGTTTTTTGGATACATGATTCGTCGATCTTCAGGTCAACTAATAACTGAAAGGTCCAGGGCAAAATACAAAGTTTGGTTCGCTGTGTTAGTGGTCGCCCTATGCATCGTTGTAGGTCTCTTTGGCTGCAAGTATTTGGAAGGAATGGACTGGCTGGAGTCCTTTTACTTGTCAGTGGTTACAGTATCATCAGTTGGTTTTGGAGATCTGCACTTTAATTCTTTAGCTGGAAAGGTTTTTGCGACTTTCTGGATACCAGTAAGCACCATTCTAGTTGGAATTTCATTTGGTTATATTTCAAAATGTGGATATGGAAGCTTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

522

Amino Acids

57.56

Weight (kDa)

9.27

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 329 - 408 5e-13 Ion channel
Ion_trans_2 PF07885 442 - 515 1.1e-11 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AarI CACCTGC 1 cut(s) 710
Acc36I ACCTGC 1 cut(s) 710
AccBSI CCGCTC 1 cut(s) 765
AccII CGCG 1 cut(s) 477
AciI CCGC 3 cut(s) 330, 333, 765
AclWI GGATC 4 cut(s) 288, 512, 716, 742
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 1521
AcuI CTGAAG 1 cut(s) 1257
AdeI CACNNNGTG 1 cut(s) 623
AfaI GTAC 3 cut(s) 429, 1016, 1207
AflII CTTAAG 1 cut(s) 1561
AgsI TTSAA 5 cut(s) 365, 401, 832, 1027, 1542
AhlI ACTAGT 1 cut(s) 646
AjnI CCWGG 3 cut(s) 21, 61, 1298
AluBI AGCT 6 cut(s) 77, 461, 571, 1005, 1469, 1560
AluI AGCT 6 cut(s) 77, 461, 571, 1005, 1469, 1560
Alw21I GWGCWC 2 cut(s) 304, 619
Alw26I GTCTC 1 cut(s) 1364
Alw44I GTGCAC 2 cut(s) 300, 615
AlwI GGATC 4 cut(s) 288, 512, 716, 742
AlwNI CAGNNNCTG 2 cut(s) 53, 929
Ama87I CYCGRG 1 cut(s) 442
AoxI GGCC 1 cut(s) 24
ApaLI GTGCAC 2 cut(s) 300, 615
ApeKI GCWGC 8 cut(s) 352, 355, 461, 565, 568, 592, 595, 1368
ApoI RAATTY 1 cut(s) 1521
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 2 cut(s) 1049, 1296
AsuHPI GGTGA 5 cut(s) 20, 247, 629, 635, 934
AsuII TTCGAA 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 442
AvaII GGWCC 2 cut(s) 1049, 1296
BaeGI GKGCMC 2 cut(s) 304, 619
BalI TGGCCA 1 cut(s) 26
BanII GRGCYC 2 cut(s) 179, 1034
BbsI GAAGAC 1 cut(s) 1095
Bbv12I GWGCWC 2 cut(s) 304, 619
BbvI GCAGC 8 cut(s) 364, 367, 448, 577, 580, 604, 607, 1355
BccI CCATC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 1132
BciT130I CCWGG 3 cut(s) 23, 63, 1300
BciVI GTATCC 7 cut(s) 693, 729, 1106, 1137, 1161, 1247, 1488
BcoDI GTCTC 1 cut(s) 1364
BcuI ACTAGT 1 cut(s) 646
BfaI CTAG 4 cut(s) 647, 729, 837, 1514
BfmI CTRYAG 2 cut(s) 495, 930
BfrI CTTAAG 1 cut(s) 1561
BfuAI ACCTGC 1 cut(s) 710
BfuI GTATCC 7 cut(s) 693, 729, 1106, 1137, 1161, 1247, 1488
BglII AGATCT 1 cut(s) 1447
BisI GCNGC 9 cut(s) 331, 353, 356, 462, 566, 569, 593, 596, 1369
BlpI GCTNAGC 1 cut(s) 1222
BlsI GCNGC 9 cut(s) 332, 354, 357, 463, 567, 570, 594, 597, 1370
Bme1390I CCNGG 3 cut(s) 23, 63, 1300
Bme18I GGWCC 2 cut(s) 1049, 1296
BmeT110I CYCGRG 1 cut(s) 442
BmgT120I GGNCC 2 cut(s) 1049, 1296
BmrFI CCNGG 3 cut(s) 23, 63, 1300
BmsI GCATC 3 cut(s) 46, 228, 1356
BpiI GAAGAC 1 cut(s) 1095
BpmI CTGGAG 1 cut(s) 1418
Bpu10I CCTNAGC 1 cut(s) 1033
Bpu1102I GCTNAGC 1 cut(s) 1222
Bpu14I TTCGAA 1 cut(s) 211
BsaBI GATNNNNATC 2 cut(s) 976, 1125
BsaI GGTCTC 1 cut(s) 1364
BsaJI CCNNGG 4 cut(s) 62, 443, 704, 1299
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bse1I ACTGG 4 cut(s) 169, 987, 1397, 1499
Bse3DI GCAATG 2 cut(s) 485, 553
Bse8I GATNNNNATC 2 cut(s) 976, 1125
BseBI CCWGG 3 cut(s) 23, 63, 1300
BseDI CCNNGG 4 cut(s) 62, 443, 704, 1299
BseGI GGATG 1 cut(s) 72
BseJI GATNNNNATC 2 cut(s) 976, 1125
BseMI GCAATG 2 cut(s) 485, 553
BseMII CTCAG 3 cut(s) 144, 578, 1047
BseNI ACTGG 4 cut(s) 169, 987, 1397, 1499
BseRI GAGGAG 2 cut(s) 690, 899
BseSI GKGCMC 2 cut(s) 304, 619
BseXI GCAGC 8 cut(s) 364, 367, 448, 577, 580, 604, 607, 1355
BseYI CCCAGC 1 cut(s) 1193
BsgI GTGCAG 1 cut(s) 1436
Bsh1236I CGCG 1 cut(s) 477
BshFI GGCC 1 cut(s) 26
BsiHKAI GWGCWC 2 cut(s) 304, 619
BsiHKCI CYCGRG 1 cut(s) 442
BsiSI CCGG 2 cut(s) 149, 902
BsmAI GTCTC 1 cut(s) 1364
BsmI GAATGC 2 cut(s) 256, 844
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 1364
BsoBI CYCGRG 1 cut(s) 442
Bsp119I TTCGAA 1 cut(s) 211
Bsp1286I GDGCHC 4 cut(s) 179, 304, 619, 1034
Bsp143I GATC 7 cut(s) 280, 379, 504, 708, 747, 1268, 1447
Bsp1720I GCTNAGC 1 cut(s) 1222
BspACI CCGC 3 cut(s) 330, 333, 765
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 3 cut(s) 145, 579, 1046
BspFNI CGCG 1 cut(s) 477
BspMAI CTGCAG 1 cut(s) 934
BspMI ACCTGC 1 cut(s) 710
BspPI GGATC 4 cut(s) 288, 512, 716, 742
BspT104I TTCGAA 1 cut(s) 211
BspTI CTTAAG 1 cut(s) 1561
BspTNI GGTCTC 1 cut(s) 1364
BsrBI CCGCTC 1 cut(s) 765
BsrDI GCAATG 2 cut(s) 485, 553
BsrI ACTGG 4 cut(s) 169, 987, 1397, 1499
BssECI CCNNGG 4 cut(s) 62, 443, 704, 1299
BssMI GATC 7 cut(s) 280, 379, 504, 708, 747, 1268, 1447
BssT1I CCWWGG 1 cut(s) 704
Bst2UI CCWGG 3 cut(s) 23, 63, 1300
Bst4CI ACNGT 6 cut(s) 49, 126, 1014, 1152, 1210, 1426
BstAFI CTTAAG 1 cut(s) 1561
BstAPI GCANNNNNTGC 1 cut(s) 725
BstBI TTCGAA 1 cut(s) 211
BstDEI CTNAG 4 cut(s) 153, 587, 1033, 1222
BstF5I GGATG 1 cut(s) 72
BstFNI CGCG 1 cut(s) 477
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 7 cut(s) 283, 382, 507, 711, 750, 1271, 1450
BstMAI GTCTC 1 cut(s) 1364
BstMBI GATC 7 cut(s) 280, 379, 504, 708, 747, 1268, 1447
BstMWI GCNNNNNNNGC 1 cut(s) 725
BstNI CCWGG 3 cut(s) 23, 63, 1300
BstSCI CCNGG 3 cut(s) 21, 61, 1298
BstSFI CTRYAG 2 cut(s) 495, 930
BstSLI GKGCMC 2 cut(s) 304, 619
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 8 cut(s) 364, 367, 448, 577, 580, 604, 607, 1355
BstV2I GAAGAC 1 cut(s) 1095
BstX2I RGATCY 1 cut(s) 1447
BstYI RGATCY 1 cut(s) 1447
BsuI GTATCC 7 cut(s) 693, 729, 1106, 1137, 1161, 1247, 1488
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 980, 1422
BveI ACCTGC 1 cut(s) 710
CaiI CAGNNNCTG 2 cut(s) 53, 929
CfoI GCGC 1 cut(s) 479
Cfr13I GGNCC 2 cut(s) 1049, 1296
Csp6I GTAC 3 cut(s) 428, 1015, 1206
CviAII CATG 5 cut(s) 383, 752, 798, 1090, 1258
CviQI GTAC 3 cut(s) 428, 1015, 1206
DdeI CTNAG 4 cut(s) 153, 587, 1033, 1222
DpnI GATC 7 cut(s) 282, 381, 506, 710, 749, 1270, 1449
DpnII GATC 7 cut(s) 280, 379, 504, 708, 747, 1268, 1447
DraIII CACNNNGTG 1 cut(s) 623
EaeI YGGCCR 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 704
Eco24I GRGCYC 2 cut(s) 179, 1034
Eco31I GGTCTC 1 cut(s) 1364
Eco32I GATATC 1 cut(s) 978
Eco47I GGWCC 2 cut(s) 1049, 1296
Eco57I CTGAAG 1 cut(s) 1257
Eco88I CYCGRG 1 cut(s) 442
EcoRII CCWGG 3 cut(s) 21, 61, 1298
EcoRV GATATC 1 cut(s) 978
EcoT14I CCWWGG 1 cut(s) 704
EcoT22I ATGCAT 1 cut(s) 1349
EcoT38I GRGCYC 2 cut(s) 179, 1034
ErhI CCWWGG 1 cut(s) 704
FaeI CATG 5 cut(s) 386, 755, 801, 1093, 1261
FatI CATG 5 cut(s) 382, 751, 797, 1089, 1257
Fnu4HI GCNGC 9 cut(s) 331, 353, 356, 462, 566, 569, 593, 596, 1369
FokI GGATG 1 cut(s) 79
FriOI GRGCYC 2 cut(s) 179, 1034
Fsp4HI GCNGC 9 cut(s) 331, 353, 356, 462, 566, 569, 593, 596, 1369
FspBI CTAG 4 cut(s) 647, 729, 837, 1514
GlaI GCGC 1 cut(s) 478
GluI GCNGC 9 cut(s) 331, 353, 356, 462, 566, 569, 593, 596, 1369
GsaI CCCAGC 1 cut(s) 1197
GsuI CTGGAG 1 cut(s) 1418
HaeIII GGCC 1 cut(s) 26
HapII CCGG 2 cut(s) 149, 902
HhaI GCGC 1 cut(s) 479
Hin1II CATG 5 cut(s) 386, 755, 801, 1093, 1261
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HincII GTYRAC 3 cut(s) 866, 1155, 1280
HindII GTYRAC 3 cut(s) 866, 1155, 1280
HindIII AAGCTT 1 cut(s) 1558
HinfI GANTC 6 cut(s) 213, 219, 451, 1061, 1261, 1400
HpaII CCGG 2 cut(s) 149, 902
HphI GGTGA 5 cut(s) 20, 247, 629, 635, 934
Hpy166II GTNNAC 5 cut(s) 302, 617, 866, 1155, 1280
Hpy188I TCNGA 6 cut(s) 55, 218, 285, 348, 588, 713
Hpy188III TCNNGA 7 cut(s) 260, 311, 442, 653, 1024, 1035, 1492
Hpy8I GTNNAC 5 cut(s) 302, 617, 866, 1155, 1280
Hpy99I CGWCG 1 cut(s) 1269
HpyAV CCTTC 6 cut(s) 179, 280, 398, 665, 1021, 1376
HpyCH4III ACNGT 6 cut(s) 49, 126, 1014, 1152, 1210, 1426
HpyCH4V TGCA 8 cut(s) 302, 617, 844, 920, 932, 1347, 1371, 1453
HpyF10VI GCNNNNNNNGC 1 cut(s) 725
HpyF3I CTNAG 4 cut(s) 153, 587, 1033, 1222
Hsp92II CATG 5 cut(s) 386, 755, 801, 1093, 1261
HspAI GCGC 1 cut(s) 477
Kzo9I GATC 7 cut(s) 280, 379, 504, 708, 747, 1268, 1447
LmnI GCTCC 3 cut(s) 64, 82, 458
Lsp1109I GCAGC 8 cut(s) 364, 367, 448, 577, 580, 604, 607, 1355
LweI GCATC 3 cut(s) 46, 228, 1356
MaeI CTAG 4 cut(s) 647, 729, 837, 1514
MaeIII GTNAC 1 cut(s) 1420
MalI GATC 7 cut(s) 282, 381, 506, 710, 749, 1270, 1449
MbiI CCGCTC 1 cut(s) 765
MboI GATC 7 cut(s) 280, 379, 504, 708, 747, 1268, 1447
MboII GAAGA 5 cut(s) 82, 275, 413, 1095, 1263
MflI RGATCY 1 cut(s) 1447
MhlI GDGCHC 4 cut(s) 179, 304, 619, 1034
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 8 cut(s) 360, 523, 601, 822, 1044, 1185, 1459, 1521
MluNI TGGCCA 1 cut(s) 26
MlyI GAGTC 1 cut(s) 1409
MmeI TCCRAC 3 cut(s) 1089, 1162, 1498
Mox20I TGGCCA 1 cut(s) 26
Mph1103I ATGCAT 1 cut(s) 1349
MscI TGGCCA 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 26
MspCI CTTAAG 1 cut(s) 1561
MspI CCGG 2 cut(s) 149, 902
MspR9I CCNGG 3 cut(s) 23, 63, 1300
Mva1269I GAATGC 2 cut(s) 256, 844
MvaI CCWGG 3 cut(s) 23, 63, 1300
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 725
NdeII GATC 7 cut(s) 280, 379, 504, 708, 747, 1268, 1447
NlaIII CATG 5 cut(s) 386, 755, 801, 1093, 1261
NsiI ATGCAT 1 cut(s) 1349
NspV TTCGAA 1 cut(s) 211
PaqCI CACCTGC 1 cut(s) 710
PctI GAATGC 2 cut(s) 256, 844
PfeI GAWTC 5 cut(s) 213, 219, 451, 1061, 1261
PkrI GCNGC 9 cut(s) 332, 354, 357, 463, 567, 570, 594, 597, 1370
PleI GAGTC 1 cut(s) 1408
PpsI GAGTC 1 cut(s) 1408
PsiI TTATAA 1 cut(s) 606
Psp6I CCWGG 3 cut(s) 21, 61, 1298
PspFI CCCAGC 1 cut(s) 1193
PspGI CCWGG 3 cut(s) 21, 61, 1298
PspPI GGNCC 2 cut(s) 1049, 1296
PstI CTGCAG 1 cut(s) 934
PstNI CAGNNNCTG 2 cut(s) 53, 929
PsuI RGATCY 1 cut(s) 1447
RsaI GTAC 3 cut(s) 429, 1016, 1207
RsaNI GTAC 3 cut(s) 428, 1015, 1206
RseI CAYNNNNRTG 1 cut(s) 249
SatI GCNGC 9 cut(s) 331, 353, 356, 462, 566, 569, 593, 596, 1369
Sau3AI GATC 7 cut(s) 280, 379, 504, 708, 747, 1268, 1447
Sau96I GGNCC 2 cut(s) 1049, 1296
SchI GAGTC 1 cut(s) 1409
ScrFI CCNGG 3 cut(s) 23, 63, 1300
SduI GDGCHC 4 cut(s) 179, 304, 619, 1034
SfaNI GCATC 3 cut(s) 46, 228, 1356
SfcI CTRYAG 2 cut(s) 495, 930
SfuI TTCGAA 1 cut(s) 211
SinI GGWCC 2 cut(s) 1049, 1296
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 1561
SmoI CTYRAG 1 cut(s) 1561
SpeI ACTAGT 1 cut(s) 646
Sse9I AATT 8 cut(s) 360, 523, 601, 822, 1044, 1185, 1459, 1521
SsiI CCGC 3 cut(s) 330, 333, 765
SspI AATATT 1 cut(s) 610
SspMI CTAG 4 cut(s) 647, 729, 837, 1514
StyD4I CCNGG 3 cut(s) 21, 61, 1298
StyI CCWWGG 1 cut(s) 704
TaaI ACNGT 6 cut(s) 49, 126, 1014, 1152, 1210, 1426
TaqI TCGA 3 cut(s) 211, 259, 1267
TasI AATT 8 cut(s) 360, 523, 601, 822, 1044, 1185, 1459, 1521
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 5 cut(s) 213, 219, 451, 1061, 1261
TscAI CASTG 2 cut(s) 987, 1422
TseI GCWGC 8 cut(s) 352, 355, 461, 565, 568, 592, 595, 1368
TspDTI ATGAA 8 cut(s) 83, 174, 198, 240, 329, 474, 545, 1515
TspRI CASTG 2 cut(s) 987, 1422
Vha464I CTTAAG 1 cut(s) 1561
VneI GTGCAC 2 cut(s) 300, 615
VpaK11BI GGWCC 2 cut(s) 1049, 1296
XapI RAATTY 1 cut(s) 1521
XspI CTAG 4 cut(s) 647, 729, 837, 1514
Zsp2I ATGCAT 1 cut(s) 1349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.