Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015113

Physical Location & Seq

Genomic Coordinates Forward (+)

10244897 .. 10247096

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGGTTTCAGCTTGGGGTTCCTGGTTGGCATCTTCGGGGTTCTGATTCTCTCTCATGCCGCCTACTCAACTGTTCAGTATAGGGGATTGTTGAAGATTATGGAGGAGGAATTTTCAGGGCCTCCGTTTACTGTGGTGGCGGAATTGCTGGTAGGGCTAGTGTTGAGTTTGTGGGCAGGACTTACTGTTCCGGGCACGTTTCTGTCGATACATCCCCATTCTGAAGAGAATAGGATTGTTGCTCTACCGGCAAACCTAGACTTTATGGTCTTCAACCATCGTGGCAAAGTATTTCCCCTGGAGATGGATTTGAAGCTGAAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015318 GO:0016020 GO:0016021 GO:0022857 GO:0022890 GO:0030176 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0032991 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072546 GO:0097708 GO:0098655 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMgT

Protein Analysis

109

Amino Acids

11.94

Weight (kDa)

6.16

Isoelectric Point (pI)

22.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03345 AT5G03345
fragaria_vesca	FvH4_6g16280
malus_domestica	MD04G1094200.v1.1 MD12G1113800.v1.1
prunus_persica	Prupe.6G232700_v2.0.a1
pyrus_communis	pycom04g08920 pycom12g11270
rosa_chinensis	RchiOBHm_Chr3g0470141
rosa_laevigata	RLG00000024293
rosa_multiflora	Rmu_sc0005600.1_g000014
rosa_roxburghii	Rroxscaffold_6G00411130
rosa_rugosa	Rorug03G0107400
rosa_samantha	Rh3DG194500
rosa_wichuraiana	Rw3G014730 Rw3G014820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AciI	CCGC	2 cut(s)	60, 140
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	94, 274, 313
AjnI	CCWGG	2 cut(s)	21, 297
AloI	GAACNNNNNNTCC	2 cut(s)	171, 203
AluBI	AGCT	2 cut(s)	12, 316
AluI	AGCT	2 cut(s)	12, 316
AoxI	GGCC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	262
BccI	CCATC	2 cut(s)	285, 298
BciT130I	CCWGG	2 cut(s)	23, 299
BcnI	CCSGG	1 cut(s)	192
BfaI	CTAG	2 cut(s)	158, 257
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	3 cut(s)	23, 192, 299
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	20
BmrFI	CCNGG	3 cut(s)	23, 192, 299
BmsI	GCATC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse118I	RCCGGY	1 cut(s)	247
BseBI	CCWGG	2 cut(s)	23, 299
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	197
BshFI	GGCC	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	191, 248
BslI	CCNNNNNNNGG	1 cut(s)	304
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	197
BspACI	CCGC	2 cut(s)	60, 140
BspANI	GGCC	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	297
Bst2UI	CCWGG	2 cut(s)	23, 299
Bst4CI	ACNGT	3 cut(s)	73, 133, 187
Bst6I	CTCTTC	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 248
BstNI	CCWGG	2 cut(s)	23, 299
BstSCI	CCNGG	3 cut(s)	21, 190, 297
BstSLI	GKGCMC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	119
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	4 cut(s)	12, 121, 157, 316
CviKI_1	RGCY	4 cut(s)	12, 121, 157, 316
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	21, 297
FaeI	CATG	1 cut(s)	59
FaiI	YATR	4 cut(s)	57, 81, 101, 266
FatI	CATG	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	2 cut(s)	158, 257
GluI	GCNGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	2 cut(s)	191, 248
Hin1II	CATG	1 cut(s)	59
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	2 cut(s)	191, 248
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	2 cut(s)	45, 223
Hpy8I	GTNNAC	1 cut(s)	129
HpyCH4III	ACNGT	3 cut(s)	73, 133, 187
HpyCH4IV	ACGT	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 248
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	59
LpnPI	CCDG	9 cut(s)	8, 35, 102, 134, 162, 204, 261, 284, 311
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	2 cut(s)	158, 257
MaeII	ACGT	1 cut(s)	197
MboII	GAAGA	4 cut(s)	25, 106, 236, 262
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	2 cut(s)	110, 143
MnlI	CCTC	3 cut(s)	97, 100, 132
MseI	TTAA	1 cut(s)	325
MspI	CCGG	2 cut(s)	191, 248
MspR9I	CCNGG	3 cut(s)	23, 192, 299
MvaI	CCWGG	2 cut(s)	23, 299
MwoI	GCNNNNNNNGC	2 cut(s)	154, 248
NciI	CCSGG	1 cut(s)	192
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	21, 297
PspGI	CCWGG	2 cut(s)	21, 297
PspN4I	GGNNCC	1 cut(s)	20
PspPI	GGNCC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	325
SatI	GCNGC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	3 cut(s)	23, 192, 299
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	4 cut(s)	14, 200, 258, 318
SfaNI	GCATC	1 cut(s)	39
Sse9I	AATT	2 cut(s)	110, 143
SsiI	CCGC	2 cut(s)	60, 140
SspMI	CTAG	2 cut(s)	158, 257
StyD4I	CCNGG	3 cut(s)	21, 190, 297
TaaI	ACNGT	3 cut(s)	73, 133, 187
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	206
TasI	AATT	2 cut(s)	110, 143
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	325
Tru9I	TTAA	1 cut(s)	325
TspGWI	ACGGA	1 cut(s)	114
XapI	RAATTY	1 cut(s)	110
XspI	CTAG	2 cut(s)	158, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.