Rh3DG194500

membrane magnesium

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
17460466 .. 17462353
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG194500.1

Sequence Viewer

Length: 327 bp
ATGGGTTTCAGTCTGGGATTCTTGGTCGGAATCTTCGGAGTTCTGATTCTGTTTCATGCCGCTTACTCAACCGTTCAGTATAGGGGATTGTTGAAGATTATGGAGGAGGAGTTTTCAGGACCACCAATCACTGTGGTGGCTGAATTGCTTCTAGGGTTAGTGTTGAGTTTGTGGGCAGGACTCACGGTTCCGGGCACGTTTCTGTCAATACATCCCCATTCTGAAGAGAATAGGATAGTTGCTCTACCGGCTAACCTAGACTTTATGATCTTCAACCATCGTGGGAAAATATTTCCCGTGGAGATGGATTTGAAGCTGAAACATTAA

Protein Analysis

108

Amino Acids

11.99

Weight (kDa)

6.16

Isoelectric Point (pI)

22.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03345 AT5G03345
fragaria_vesca FvH4_6g16280
malus_domestica MD04G1094200.v1.1 MD12G1113800.v1.1
prunus_persica Prupe.6G232700_v2.0.a1
pyrus_communis pycom04g08920 pycom12g11270
rosa_chinensis RchiOBHm_Chr3g0470141
rosa_laevigata RLG00000024293
rosa_multiflora Rmu_sc0005600.1_g000014
rosa_roxburghii Rroxscaffold_6G00411130
rosa_rugosa Rorug03G0107400
rosa_samantha Rh3DG194500
rosa_wichuraiana Rw3G014730 Rw3G014820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 243
AgsI TTSAA 3 cut(s) 94, 274, 313
AleI CACNNNNGTG 1 cut(s) 134
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 192
AvaII GGWCC 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 197
BccI CCATC 2 cut(s) 285, 298
BcnI CCSGG 1 cut(s) 192
BfaI CTAG 2 cut(s) 152, 257
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bse118I RCCGGY 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 211
BseRI GAGGAG 2 cut(s) 119, 122
BseSI GKGCMC 1 cut(s) 197
BsiSI CCGG 2 cut(s) 191, 248
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 73, 133, 187
Bst6I CTCTTC 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 197
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 129
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 119
CspCI CAANNNNNGTGG 4 cut(s) 114, 149, 262, 297
CviAII CATG 1 cut(s) 56
CviJI RGCY 3 cut(s) 140, 251, 316
CviKI_1 RGCY 3 cut(s) 140, 251, 316
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 243
FaeI CATG 1 cut(s) 59
FaiI YATR 4 cut(s) 57, 81, 101, 266
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 2 cut(s) 152, 257
GluI GCNGC 1 cut(s) 60
HapII CCGG 2 cut(s) 191, 248
Hin1II CATG 1 cut(s) 59
HinfI GANTC 4 cut(s) 18, 30, 46, 180
HpaII CCGG 2 cut(s) 191, 248
Hpy188I TCNGA 4 cut(s) 29, 38, 45, 223
Hpy188III TCNNGA 1 cut(s) 117
HpyCH4III ACNGT 3 cut(s) 73, 133, 187
HpyCH4IV ACGT 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 1 cut(s) 59
Kzo9I GATC 1 cut(s) 267
LpnPI CCDG 4 cut(s) 102, 162, 204, 261
MaeI CTAG 2 cut(s) 152, 257
MaeII ACGT 1 cut(s) 197
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 4 cut(s) 25, 106, 236, 262
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 1 cut(s) 143
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 2 cut(s) 97, 100
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 1 cut(s) 325
MslI CAYNNNNRTG 1 cut(s) 134
MspI CCGG 2 cut(s) 191, 248
MspR9I CCNGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 248
NciI CCSGG 1 cut(s) 192
NdeII GATC 1 cut(s) 267
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 189
OliI CACNNNNGTG 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 3 cut(s) 18, 30, 46
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 1 cut(s) 119
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 197
SetI ASST 3 cut(s) 200, 258, 318
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 1 cut(s) 143
SsiI CCGC 1 cut(s) 60
SspI AATATT 1 cut(s) 291
SspMI CTAG 2 cut(s) 152, 257
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 3 cut(s) 73, 133, 187
TaiI ACGT 1 cut(s) 200
TasI AATT 1 cut(s) 143
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 3 cut(s) 18, 30, 46
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 44
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 2 cut(s) 152, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.