pycom12g11270

membrane magnesium

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
13484001 .. 13486787
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g11270.4

Sequence Viewer

Length: 327 bp
ATGGCGATGAGTTTGGGCTTCGTTGTTGGCATCTTAGGCGTTGTAATTCTCTCTCATGCCGCTTATTCAACCGTTCAATACAGAGGATTGTTGAAGATTATGGAGGAAGAGTTTCCAGGACCTCCATTGACTGTGGTGGTTGAATTGCTTCTAGGGTTAGCGTTCTGTATGTGGGCGGCACTTACTGTCCCGGGCACGTTTCTTTCGATTCATCCCCATTCTGAAGAGAATCGGATTGTTTCTCTACCAGACAACCTTGACTTTATGATTTTCAACCATCGGGCCAGAGTGTTACCTGTGGAGATGGATTTGAAGTTCAAACACTGA

Protein Analysis

109

Amino Acids

12.05

Weight (kDa)

5.88

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03345 AT5G03345
fragaria_vesca FvH4_6g16280
malus_domestica MD04G1094200.v1.1 MD12G1113800.v1.1
prunus_persica Prupe.6G232700_v2.0.a1
pyrus_communis pycom04g08920 pycom12g11270
rosa_chinensis RchiOBHm_Chr3g0470141
rosa_laevigata RLG00000024293
rosa_multiflora Rmu_sc0005600.1_g000014
rosa_roxburghii Rroxscaffold_6G00411130
rosa_rugosa Rorug03G0107400
rosa_samantha Rh3DG194500
rosa_wichuraiana Rw3G014730 Rw3G014820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 60, 176
AcuI CTGAAG 1 cut(s) 243
AgsI TTSAA 7 cut(s) 69, 77, 94, 143, 274, 313, 319
AjnI CCWGG 1 cut(s) 115
AloI GAACNNNNNNTCC 1 cut(s) 299
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 1 cut(s) 282
Asp700I GAANNNNTTC 2 cut(s) 111, 147
AspS9I GGNCC 2 cut(s) 119, 282
AsuC2I CCSGG 2 cut(s) 191, 192
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 197
BccI CCATC 2 cut(s) 285, 298
BciT130I CCWGG 1 cut(s) 117
BcnI CCSGG 2 cut(s) 191, 192
BfaI CTAG 1 cut(s) 152
BisI GCNGC 2 cut(s) 60, 177
BlsI GCNGC 2 cut(s) 61, 178
Bme1390I CCNGG 3 cut(s) 117, 191, 192
Bme18I GGWCC 1 cut(s) 119
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 119, 282
BmrFI CCNGG 3 cut(s) 117, 191, 192
BmsI GCATC 1 cut(s) 39
BpuMI CCSGG 2 cut(s) 191, 192
BsaJI CCNNGG 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 211
BseSI GKGCMC 1 cut(s) 197
BshFI GGCC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 284
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 197
BspACI CCGC 2 cut(s) 60, 176
BspANI GGCC 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 73, 133, 187
Bst6I CTCTTC 2 cut(s) 102, 219
BstDEI CTNAG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 3 cut(s) 115, 189, 190
BstSLI GKGCMC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 284
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 119, 282
Cfr9I CCCGGG 1 cut(s) 190
CviAII CATG 1 cut(s) 56
CviJI RGCY 2 cut(s) 18, 284
CviKI_1 RGCY 2 cut(s) 18, 284
DdeI CTNAG 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 102, 219
EarI CTCTTC 2 cut(s) 102, 219
Eco47I GGWCC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 115
FaeI CATG 1 cut(s) 59
FaiI YATR 4 cut(s) 57, 101, 170, 266
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 60, 177
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 60, 177
FspBI CTAG 1 cut(s) 152
GluI GCNGC 2 cut(s) 60, 177
HaeIII GGCC 1 cut(s) 284
HapII CCGG 1 cut(s) 191
Hin1II CATG 1 cut(s) 59
HinfI GANTC 2 cut(s) 208, 229
HpaII CCGG 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 223, 234
HpyCH4III ACNGT 3 cut(s) 73, 133, 187
HpyCH4IV ACGT 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 1 cut(s) 59
LpnPI CCDG 6 cut(s) 102, 129, 204, 261, 298, 309
LweI GCATC 1 cut(s) 39
MaeI CTAG 1 cut(s) 152
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 291
MboII GAAGA 3 cut(s) 106, 119, 236
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 2 cut(s) 45, 143
MnlI CCTC 3 cut(s) 77, 97, 132
MroXI GAANNNNTTC 2 cut(s) 111, 147
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 3 cut(s) 117, 191, 192
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 36
NciI CCSGG 2 cut(s) 191, 192
NlaIII CATG 1 cut(s) 59
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PdmI GAANNNNTTC 2 cut(s) 111, 147
PfeI GAWTC 2 cut(s) 208, 229
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 2 cut(s) 61, 178
PpuMI RGGWCCY 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspPI GGNCC 2 cut(s) 119, 282
PspPPI RGGWCCY 1 cut(s) 119
SatI GCNGC 2 cut(s) 60, 177
Sau96I GGNCC 2 cut(s) 119, 282
ScrFI CCNGG 3 cut(s) 117, 191, 192
SduI GDGCHC 1 cut(s) 197
SetI ASST 4 cut(s) 124, 200, 258, 298
SfaNI GCATC 1 cut(s) 39
SinI GGWCC 1 cut(s) 119
SmaI CCCGGG 1 cut(s) 192
Sse9I AATT 2 cut(s) 45, 143
SsiI CCGC 2 cut(s) 60, 176
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 3 cut(s) 115, 189, 190
TaaI ACNGT 3 cut(s) 73, 133, 187
TaiI ACGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 206
TasI AATT 2 cut(s) 45, 143
TauI GCSGC 2 cut(s) 62, 179
TfiI GAWTC 2 cut(s) 208, 229
TspDTI ATGAA 1 cut(s) 200
TspMI CCCGGG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 119
XmaI CCCGGG 1 cut(s) 190
XmnI GAANNNNTTC 2 cut(s) 111, 147
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.