Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0015113

Physical Location & Seq

Genomic Coordinates Reverse (-)

11089780 .. 11091585

Gene Structure 1806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g08920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGATGAGTTTTGGCTTCGTTGTTGGCATCCTGGGAATTGTAATTCTCTCTCACGCTGCTTATTCAACCGTTCAATACAGGGGATTGTTGAAGATTATGGAGGAAGAGTTTTCAGGACCTCCATTAACTGTGGTCGCCGAATTGCTTCTAGGGCTAGGGTTCTGTATGTGGGCGGCACTTACTGTCCCGGGCACGTTTCTTTCGATTCATCCCTATTCTGAAGAGAACAGGATTGTTTCTCTACCAGACAACCTTGACTTTATCGATCTTCAACCATCGTGCCAGAGTGTTTCCCGTGGAGTTGGATTTGAAGTTCAAACACTGACGATTTCAACCATCGTGGAATGTATTCGACCAAAGTACCGACGATTTCAGTTTCTTTCTTGGCCTTTAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015318 GO:0016020 GO:0016021 GO:0022857 GO:0022890 GO:0030176 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0032991 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072546 GO:0097708 GO:0098655 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMgT

Protein Analysis

134

Amino Acids

14.75

Weight (kDa)

5.24

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03345 AT5G03345
fragaria_vesca	FvH4_6g16280
malus_domestica	MD04G1094200.v1.1 MD12G1113800.v1.1
prunus_persica	Prupe.6G232700_v2.0.a1
pyrus_communis	pycom04g08920 pycom12g11270
rosa_chinensis	RchiOBHm_Chr3g0470141
rosa_laevigata	RLG00000024293
rosa_multiflora	Rmu_sc0005600.1_g000014
rosa_roxburghii	Rroxscaffold_6G00411130
rosa_rugosa	Rorug03G0107400
rosa_samantha	Rh3DG194500
rosa_wichuraiana	Rw3G014730 Rw3G014820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	365
AgsI	TTSAA	7 cut(s)	69, 77, 94, 275, 314, 320, 336
AjnI	CCWGG	1 cut(s)	33
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
Ama87I	CYCGRG	1 cut(s)	190
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	59
Asp700I	GAANNNNTTC	2 cut(s)	147, 351
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	2 cut(s)	191, 192
AvaI	CYCGRG	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	197
BaeI	ACNNNNGTAYC	2 cut(s)	347, 380
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	2 cut(s)	286, 347
BciT130I	CCWGG	1 cut(s)	35
BcnI	CCSGG	2 cut(s)	191, 192
BfaI	CTAG	2 cut(s)	152, 158
BisI	GCNGC	2 cut(s)	60, 177
BlsI	GCNGC	2 cut(s)	61, 178
Bme1390I	CCNGG	3 cut(s)	35, 191, 192
Bme18I	GGWCC	1 cut(s)	119
BmeT110I	CYCGRG	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	119
BmrFI	CCNGG	3 cut(s)	35, 191, 192
BmsI	GCATC	1 cut(s)	39
BpuMI	CCSGG	2 cut(s)	191, 192
Bsa29I	ATCGAT	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	34, 190, 298
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
BseBI	CCWGG	1 cut(s)	35
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	34, 190, 298
BseGI	GGATG	2 cut(s)	30, 211
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	46
BshFI	GGCC	1 cut(s)	391
BshVI	ATCGAT	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	391
BsoBI	CYCGRG	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	1 cut(s)	391
BspDI	ATCGAT	1 cut(s)	267
BssECI	CCNNGG	3 cut(s)	34, 190, 298
BssMI	GATC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	3 cut(s)	73, 133, 187
Bst6I	CTCTTC	2 cut(s)	102, 219
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	2 cut(s)	30, 211
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	3 cut(s)	33, 189, 190
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	391
BsuTUI	ATCGAT	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	298
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	30, 211
BtsIMutI	CAGTG	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	119
Cfr9I	CCCGGG	1 cut(s)	190
ClaI	ATCGAT	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	364
CspCI	CAANNNNNGTGG	2 cut(s)	324, 359
CviJI	RGCY	3 cut(s)	18, 157, 391
CviKI_1	RGCY	3 cut(s)	18, 157, 391
CviQI	GTAC	1 cut(s)	364
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	2 cut(s)	102, 219
EarI	CTCTTC	2 cut(s)	102, 219
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	33
FaiI	YATR	2 cut(s)	101, 170
FaqI	GGGAC	1 cut(s)	173
Fnu4HI	GCNGC	2 cut(s)	60, 177
FokI	GGATG	2 cut(s)	17, 198
Fsp4HI	GCNGC	2 cut(s)	60, 177
FspBI	CTAG	2 cut(s)	152, 158
GluI	GCNGC	2 cut(s)	60, 177
HaeIII	GGCC	1 cut(s)	391
HapII	CCGG	1 cut(s)	191
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	1 cut(s)	117
Hpy99I	CGWCG	1 cut(s)	372
HpyCH4III	ACNGT	3 cut(s)	73, 133, 187
HpyCH4IV	ACGT	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpySE526I	ACGT	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	268
LpnPI	CCDG	8 cut(s)	20, 47, 67, 102, 204, 217, 261, 299
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	2 cut(s)	152, 158
MaeII	ACGT	1 cut(s)	197
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	4 cut(s)	106, 119, 236, 263
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	3 cut(s)	39, 45, 143
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	2 cut(s)	97, 132
MroXI	GAANNNNTTC	2 cut(s)	147, 351
MseI	TTAA	1 cut(s)	128
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	3 cut(s)	35, 191, 192
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	154
NciI	CCSGG	2 cut(s)	191, 192
NdeII	GATC	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PdmI	GAANNNNTTC	2 cut(s)	147, 351
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	61, 178
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	119
PspPPI	RGGWCCY	1 cut(s)	119
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	2 cut(s)	60, 177
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	3 cut(s)	35, 191, 192
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	3 cut(s)	124, 200, 258
SfaNI	GCATC	1 cut(s)	39
SinI	GGWCC	1 cut(s)	119
SmaI	CCCGGG	1 cut(s)	192
Sse9I	AATT	3 cut(s)	39, 45, 143
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	2 cut(s)	152, 158
StyD4I	CCNGG	3 cut(s)	33, 189, 190
TaaI	ACNGT	3 cut(s)	73, 133, 187
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	3 cut(s)	206, 267, 355
TasI	AATT	3 cut(s)	39, 45, 143
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	1 cut(s)	330
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	200
TspMI	CCCGGG	1 cut(s)	190
TspRI	CASTG	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	119
XmaI	CCCGGG	1 cut(s)	190
XmnI	GAANNNNTTC	2 cut(s)	147, 351
XspI	CTAG	2 cut(s)	152, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.