Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005600.1

Orthogroup ID

OG0015113

Physical Location & Seq

Genomic Coordinates Forward (+)

63137 .. 65482

Gene Structure 2346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005600.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgggtttcagtctgggattcttggtcggaatcttgggagttctgattctgtttcatgccgcttactcaactgttcagtataggggattgttgaagattatggaggaggagttttcaggaccaccaatcactgtggtggctgaattgcttctagggttagtgttgagtttgtgggcagggctcacggttccgggcacgtttctgtcaatacatccccattctgaagagaataggtatgtgttaagagtggtggctgaattgcttctagggttagtgttgagtttgtgggcagggctcacggttccgggcacgtttctgtcaatacatccccattctgaagagaataggatagttgctctaccggctaacctagactttatgatcttcaaccatcgtgggaaagtatttcccgtggagatggatttgaagctgaaacattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015318 GO:0016020 GO:0016021 GO:0022857 GO:0022890 GO:0030176 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0032991 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072546 GO:0097708 GO:0098655 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMgT

Protein Analysis

146

Amino Acids

16.13

Weight (kDa)

6.13

Isoelectric Point (pI)

28.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03345 AT5G03345
fragaria_vesca	FvH4_6g16280
malus_domestica	MD04G1094200.v1.1 MD12G1113800.v1.1
prunus_persica	Prupe.6G232700_v2.0.a1
pyrus_communis	pycom04g08920 pycom12g11270
rosa_chinensis	RchiOBHm_Chr3g0470141
rosa_laevigata	RLG00000024293
rosa_multiflora	Rmu_sc0005600.1_g000014
rosa_roxburghii	Rroxscaffold_6G00411130
rosa_rugosa	Rorug03G0107400
rosa_samantha	Rh3DG194500
rosa_wichuraiana	Rw3G014730 Rw3G014820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	60
AcuI	CTGAAG	2 cut(s)	243, 357
AgsI	TTSAA	3 cut(s)	94, 388, 427
AleI	CACNNNNGTG	1 cut(s)	134
AluBI	AGCT	1 cut(s)	430
AluI	AGCT	1 cut(s)	430
Asp700I	GAANNNNTTC	2 cut(s)	147, 261
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	2 cut(s)	192, 306
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	2 cut(s)	197, 311
BanII	GRGCYC	2 cut(s)	183, 297
BccI	CCATC	2 cut(s)	399, 412
BcnI	CCSGG	2 cut(s)	192, 306
BfaI	CTAG	3 cut(s)	152, 266, 371
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	2 cut(s)	192, 306
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	189, 303
BmrFI	CCNGG	2 cut(s)	192, 306
BpuMI	CCSGG	2 cut(s)	192, 306
BsaJI	CCNNGG	1 cut(s)	411
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bse118I	RCCGGY	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	2 cut(s)	211, 325
BseRI	GAGGAG	2 cut(s)	119, 122
BseSI	GKGCMC	2 cut(s)	197, 311
BsiSI	CCGG	3 cut(s)	191, 305, 362
Bsp1286I	GDGCHC	4 cut(s)	183, 197, 297, 311
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	189, 303
BsrFI	RCCGGY	1 cut(s)	361
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	1 cut(s)	381
Bst4CI	ACNGT	4 cut(s)	73, 133, 187, 301
Bst6I	CTCTTC	2 cut(s)	219, 333
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	2 cut(s)	211, 325
BstKTI	GATC	1 cut(s)	384
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	190, 304
BstSLI	GKGCMC	2 cut(s)	197, 311
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	2 cut(s)	211, 325
BtsIMutI	CAGTG	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	119
CspCI	CAANNNNNGTGG	4 cut(s)	114, 149, 376, 411
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	6 cut(s)	140, 181, 254, 295, 365, 430
CviKI_1	RGCY	6 cut(s)	140, 181, 254, 295, 365, 430
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	219, 333
EarI	CTCTTC	2 cut(s)	219, 333
Eco24I	GRGCYC	2 cut(s)	183, 297
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	243, 357
EcoT38I	GRGCYC	2 cut(s)	183, 297
FaeI	CATG	1 cut(s)	59
FaiI	YATR	5 cut(s)	57, 81, 101, 237, 380
FatI	CATG	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	2 cut(s)	198, 312
FriOI	GRGCYC	2 cut(s)	183, 297
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	3 cut(s)	152, 266, 371
GluI	GCNGC	1 cut(s)	60
HapII	CCGG	3 cut(s)	191, 305, 362
Hin1II	CATG	1 cut(s)	59
HinfI	GANTC	3 cut(s)	18, 30, 46
HpaII	CCGG	3 cut(s)	191, 305, 362
Hpy188I	TCNGA	4 cut(s)	29, 45, 223, 337
Hpy188III	TCNNGA	1 cut(s)	117
HpyCH4III	ACNGT	4 cut(s)	73, 133, 187, 301
HpyCH4IV	ACGT	2 cut(s)	197, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpySE526I	ACGT	2 cut(s)	197, 311
Hsp92II	CATG	1 cut(s)	59
Kzo9I	GATC	1 cut(s)	381
LpnPI	CCDG	6 cut(s)	102, 162, 204, 276, 318, 375
MaeI	CTAG	3 cut(s)	152, 266, 371
MaeII	ACGT	2 cut(s)	197, 311
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	4 cut(s)	106, 236, 350, 376
MhlI	GDGCHC	4 cut(s)	183, 197, 297, 311
MluCI	AATT	2 cut(s)	143, 257
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	2 cut(s)	97, 100
MroXI	GAANNNNTTC	2 cut(s)	147, 261
MseI	TTAA	2 cut(s)	242, 439
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	3 cut(s)	191, 305, 362
MspR9I	CCNGG	2 cut(s)	192, 306
MwoI	GCNNNNNNNGC	1 cut(s)	362
NciI	CCSGG	2 cut(s)	192, 306
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	189, 303
OliI	CACNNNNGTG	1 cut(s)	134
PdmI	GAANNNNTTC	2 cut(s)	147, 261
PfeI	GAWTC	3 cut(s)	18, 30, 46
PkrI	GCNGC	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	189, 303
PspPI	GGNCC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	242, 439
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	192, 306
SduI	GDGCHC	4 cut(s)	183, 197, 297, 311
SetI	ASST	5 cut(s)	200, 236, 314, 372, 432
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	2 cut(s)	143, 257
SsiI	CCGC	1 cut(s)	60
SspMI	CTAG	3 cut(s)	152, 266, 371
StyD4I	CCNGG	2 cut(s)	190, 304
TaaI	ACNGT	4 cut(s)	73, 133, 187, 301
TaiI	ACGT	2 cut(s)	200, 314
TasI	AATT	2 cut(s)	143, 257
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	3 cut(s)	18, 30, 46
Tru1I	TTAA	2 cut(s)	242, 439
Tru9I	TTAA	2 cut(s)	242, 439
TscAI	CASTG	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	119
XmnI	GAANNNNTTC	2 cut(s)	147, 261
XspI	CTAG	3 cut(s)	152, 266, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.