Protein SHOOT GRAVITROPISM
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G36810 AT2G36810 AT2G36810 |
| fragaria_vesca | FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 |
| malus_domestica | MD12G1104900.v1.1 MD12G1105200.v1.1 |
| prunus_persica | Prupe.7G124700_v2.0.a1 Prupe.7G124700_v2.0.a1 |
| pyrus_communis | pycom12g10320 pycom12g10330 pycom12g10430 |
| rosa_chinensis | RchiOBHm_Chr3g0471001 |
| rosa_laevigata | RLG00000024210 |
| rosa_multiflora | Rmu_co8323907.1_g000001 Rmu_co8431237.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00410320 |
| rosa_rugosa | Rorug03G0114800 |
| rosa_samantha | Rh3AG164300 Rh3BG190000 Rh3CG179900 Rh3DG186200 |
| rosa_wichuraiana | Rw3G015450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 3255 |
| Acc16I | TGCGCA | 1 cut(s) | 2420 |
| Acc36I | ACCTGC | 1 cut(s) | 4633 |
| AccB1I | GGYRCC | 1 cut(s) | 1783 |
| AccI | GTMKAC | 3 cut(s) | 1065, 4297, 4382 |
| AccII | CGCG | 4 cut(s) | 299, 520, 2472, 3657 |
| AccIII | TCCGGA | 1 cut(s) | 17 |
| AcoI | YGGCCR | 6 cut(s) | 162, 560, 3609, 3665, 3963, 4913 |
| AcsI | RAATTY | 4 cut(s) | 427, 667, 923, 3016 |
| AcuI | CTGAAG | 9 cut(s) | 1092, 1194, 2304, 2850, 3141, 3429, 3786, 4361, 4526 |
| AcyI | GRCGYC | 2 cut(s) | 5, 3252 |
| AdeI | CACNNNGTG | 2 cut(s) | 1142, 3104 |
| AfeI | AGCGCT | 1 cut(s) | 1257 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 136, 394, 536, 640, 964, 1522, 2703, 4744 |
| AflII | CTTAAG | 1 cut(s) | 1868 |
| AflIII | ACRYGT | 3 cut(s) | 508, 3730, 4300 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 655, 1455 |
| AhlI | ACTAGT | 1 cut(s) | 3578 |
| AjnI | CCWGG | 5 cut(s) | 1955, 2196, 3243, 3723, 4923 |
| Alw21I | GWGCWC | 5 cut(s) | 324, 936, 1138, 3578, 5069 |
| Alw26I | GTCTC | 7 cut(s) | 2836, 3069, 3139, 3780, 4104, 4132, 4320 |
| Alw44I | GTGCAC | 1 cut(s) | 1134 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 4223 |
| Ama87I | CYCGRG | 1 cut(s) | 419 |
| Aor13HI | TCCGGA | 1 cut(s) | 17 |
| Aor51HI | AGCGCT | 1 cut(s) | 1257 |
| ApaLI | GTGCAC | 1 cut(s) | 1134 |
| ApoI | RAATTY | 4 cut(s) | 427, 667, 923, 3016 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1042, 1074 |
| AseI | ATTAAT | 1 cut(s) | 2481 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 405, 3831 |
| AspLEI | GCGC | 5 cut(s) | 472, 1258, 2421, 2474, 4332 |
| AspS9I | GGNCC | 6 cut(s) | 352, 422, 908, 1304, 2524, 5074 |
| AsuC2I | CCSGG | 4 cut(s) | 420, 421, 772, 799 |
| AsuHPI | GGTGA | 6 cut(s) | 1450, 1663, 1972, 2935, 4476, 4790 |
| AsuII | TTCGAA | 2 cut(s) | 2245, 3584 |
| AvaI | CYCGRG | 1 cut(s) | 419 |
| AvaII | GGWCC | 3 cut(s) | 908, 1304, 2524 |
| AxyI | CCTNAGG | 2 cut(s) | 1689, 2701 |
| BaeGI | GKGCMC | 4 cut(s) | 1138, 2959, 3997, 4621 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1635, 1668, 5004, 5037 |
| BalI | TGGCCA | 4 cut(s) | 3611, 3667, 3965, 4915 |
| BamHI | GGATCC | 2 cut(s) | 259, 4501 |
| BanI | GGYRCC | 1 cut(s) | 1783 |
| BanII | GRGCYC | 2 cut(s) | 324, 936 |
| BauI | CACGAG | 1 cut(s) | 1668 |
| BbsI | GAAGAC | 4 cut(s) | 860, 1025, 1484, 3586 |
| Bbv12I | GWGCWC | 5 cut(s) | 324, 936, 1138, 3578, 5069 |
| BceAI | ACGGC | 6 cut(s) | 29, 149, 1196, 3200, 3519, 4544 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 355, 389, 4692, 4726 |
| BciT130I | CCWGG | 5 cut(s) | 1957, 2198, 3245, 3725, 4925 |
| BciVI | GTATCC | 2 cut(s) | 983, 3765 |
| BclI | TGATCA | 4 cut(s) | 2851, 3151, 3748, 4972 |
| BcnI | CCSGG | 4 cut(s) | 420, 421, 772, 799 |
| BcoDI | GTCTC | 7 cut(s) | 2836, 3069, 3139, 3780, 4104, 4132, 4320 |
| BcuI | ACTAGT | 1 cut(s) | 3578 |
| BfmI | CTRYAG | 6 cut(s) | 735, 3226, 3282, 4215, 4246, 4449 |
| BfoI | RGCGCY | 2 cut(s) | 1259, 4333 |
| BfrI | CTTAAG | 1 cut(s) | 1868 |
| BfuAI | ACCTGC | 1 cut(s) | 4633 |
| BfuI | GTATCC | 2 cut(s) | 983, 3765 |
| BglII | AGATCT | 3 cut(s) | 1628, 1864, 4036 |
| BlpI | GCTNAGC | 2 cut(s) | 935, 4848 |
| BmcAI | AGTACT | 2 cut(s) | 1770, 4720 |
| Bme1390I | CCNGG | 9 cut(s) | 420, 421, 772, 799, 1957, 2198, 3245, 3725, 4925 |
| Bme18I | GGWCC | 3 cut(s) | 908, 1304, 2524 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 655, 1455 |
| BmeT110I | CYCGRG | 1 cut(s) | 419 |
| BmgT120I | GGNCC | 6 cut(s) | 352, 422, 908, 1304, 2524, 5074 |
| BmiI | GGNNCC | 7 cut(s) | 36, 261, 1785, 2525, 2655, 4264, 4503 |
| BmrFI | CCNGG | 9 cut(s) | 420, 421, 772, 799, 1957, 2198, 3245, 3725, 4925 |
| BmrI | ACTGGG | 2 cut(s) | 3519, 4623 |
| BmuI | ACTGGG | 2 cut(s) | 3519, 4623 |
| BpiI | GAAGAC | 4 cut(s) | 860, 1025, 1484, 3586 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 293, 325 |
| BpmI | CTGGAG | 4 cut(s) | 21, 3266, 4930, 5109 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 935, 4848 |
| Bpu14I | TTCGAA | 2 cut(s) | 2245, 3584 |
| BpuEI | CTTGAG | 5 cut(s) | 2860, 2906, 4061, 4496, 4658 |
| BpuMI | CCSGG | 4 cut(s) | 420, 421, 772, 799 |
| BsaBI | GATNNNNATC | 3 cut(s) | 258, 2254, 3753 |
| BsaHI | GRCGYC | 2 cut(s) | 5, 3252 |
| BsaI | GGTCTC | 1 cut(s) | 4132 |
| BsaWI | WCCGGW | 4 cut(s) | 17, 136, 961, 2945 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 110, 140, 3066, 3096, 4277, 4307 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 136, 394, 536, 640, 964, 1522, 2703, 4744 |
| Bse118I | RCCGGY | 1 cut(s) | 558 |
| Bse1I | ACTGG | 5 cut(s) | 338, 3514, 4618, 4749, 5126 |
| Bse21I | CCTNAGG | 2 cut(s) | 1689, 2701 |
| Bse3DI | GCAATG | 3 cut(s) | 120, 482, 2166 |
| Bse8I | GATNNNNATC | 3 cut(s) | 258, 2254, 3753 |
| BseAI | TCCGGA | 1 cut(s) | 17 |
| BseBI | CCWGG | 5 cut(s) | 1957, 2198, 3245, 3725, 4925 |
| BseGI | GGATG | 7 cut(s) | 259, 403, 1396, 1942, 2109, 2177, 3239 |
| BseJI | GATNNNNATC | 3 cut(s) | 258, 2254, 3753 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 136, 394, 536, 640, 964, 1522, 2703, 4744 |
| BseMI | GCAATG | 3 cut(s) | 120, 482, 2166 |
| BseNI | ACTGG | 5 cut(s) | 338, 3514, 4618, 4749, 5126 |
| BseRI | GAGGAG | 6 cut(s) | 56, 189, 301, 944, 1706, 3283 |
| BseSI | GKGCMC | 4 cut(s) | 1138, 2959, 3997, 4621 |
| BseX3I | CGGCCG | 1 cut(s) | 162 |
| BseYI | CCCAGC | 3 cut(s) | 203, 3696, 4396 |
| BsgI | GTGCAG | 5 cut(s) | 1602, 1639, 2010, 2816, 3126 |
| Bsh1236I | CGCG | 4 cut(s) | 299, 520, 2472, 3657 |
| Bsh1285I | CGRYCG | 1 cut(s) | 165 |
| BshNI | GGYRCC | 1 cut(s) | 1783 |
| BsiEI | CGRYCG | 1 cut(s) | 165 |
| BsiHKAI | GWGCWC | 5 cut(s) | 324, 936, 1138, 3578, 5069 |
| BsiHKCI | CYCGRG | 1 cut(s) | 419 |
| BsiSI | CCGG | 9 cut(s) | 18, 137, 420, 559, 772, 799, 962, 2946, 4714 |
| BslFI | GGGAC | 6 cut(s) | 791, 1462, 1913, 2401, 2537, 2571 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 136, 394, 536, 640, 964, 1522, 2703, 4744 |
| BsmAI | GTCTC | 7 cut(s) | 2836, 3069, 3139, 3780, 4104, 4132, 4320 |
| BsmFI | GGGAC | 6 cut(s) | 791, 1462, 1913, 2401, 2537, 2571 |
| BsmI | GAATGC | 2 cut(s) | 3038, 4007 |
| Bso31I | GGTCTC | 1 cut(s) | 4132 |
| BsoBI | CYCGRG | 1 cut(s) | 419 |
| Bsp119I | TTCGAA | 2 cut(s) | 2245, 3584 |
| Bsp1286I | GDGCHC | 8 cut(s) | 324, 936, 1138, 2959, 3578, 3997, 4621, 5069 |
| Bsp13I | TCCGGA | 1 cut(s) | 17 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 935, 4848 |
| BspEI | TCCGGA | 1 cut(s) | 17 |
| BspFNI | CGCG | 4 cut(s) | 299, 520, 2472, 3657 |
| BspHI | TCATGA | 1 cut(s) | 270 |
| BspLI | GGNNCC | 7 cut(s) | 36, 261, 1785, 2525, 2655, 4264, 4503 |
| BspMAI | CTGCAG | 2 cut(s) | 4219, 4453 |
| BspMI | ACCTGC | 1 cut(s) | 4633 |
| BspT104I | TTCGAA | 2 cut(s) | 2245, 3584 |
| BspT107I | GGYRCC | 1 cut(s) | 1783 |
| BspTI | CTTAAG | 1 cut(s) | 1868 |
| BspTNI | GGTCTC | 1 cut(s) | 4132 |
| BsrDI | GCAATG | 3 cut(s) | 120, 482, 2166 |
| BsrFI | RCCGGY | 1 cut(s) | 558 |
| BsrI | ACTGG | 5 cut(s) | 338, 3514, 4618, 4749, 5126 |
| BssAI | RCCGGY | 1 cut(s) | 558 |
| BssNAI | GTATAC | 2 cut(s) | 1066, 4383 |
| BssNI | GRCGYC | 2 cut(s) | 5, 3252 |
| BssSI | CACGAG | 1 cut(s) | 1668 |
| BssT1I | CCWWGG | 4 cut(s) | 315, 2959, 4910, 5077 |
| Bst1107I | GTATAC | 2 cut(s) | 1066, 4383 |
| Bst2BI | CACGAG | 1 cut(s) | 1668 |
| Bst2UI | CCWGG | 5 cut(s) | 1957, 2198, 3245, 3725, 4925 |
| Bst6I | CTCTTC | 5 cut(s) | 2280, 2884, 3322, 3721, 3942 |
| BstACI | GRCGYC | 2 cut(s) | 5, 3252 |
| BstAFI | CTTAAG | 1 cut(s) | 1868 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 467, 1159, 2342, 2830, 4223 |
| BstBI | TTCGAA | 2 cut(s) | 2245, 3584 |
| BstDSI | CCRYGG | 1 cut(s) | 297 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 534 |
| BstF5I | GGATG | 7 cut(s) | 259, 403, 1396, 1942, 2109, 2177, 3239 |
| BstFNI | CGCG | 4 cut(s) | 299, 520, 2472, 3657 |
| BstH2I | RGCGCY | 2 cut(s) | 1259, 4333 |
| BstHHI | GCGC | 5 cut(s) | 472, 1258, 2421, 2474, 4332 |
| BstMAI | GTCTC | 7 cut(s) | 2836, 3069, 3139, 3780, 4104, 4132, 4320 |
| BstMCI | CGRYCG | 1 cut(s) | 165 |
| BstNI | CCWGG | 5 cut(s) | 1957, 2198, 3245, 3725, 4925 |
| BstNSI | RCATGY | 8 cut(s) | 512, 2306, 2634, 3518, 3734, 4304, 4652, 4780 |
| BstSCI | CCNGG | 9 cut(s) | 418, 419, 770, 797, 1955, 2196, 3243, 3723, 4923 |
| BstSFI | CTRYAG | 6 cut(s) | 735, 3226, 3282, 4215, 4246, 4449 |
| BstSLI | GKGCMC | 4 cut(s) | 1138, 2959, 3997, 4621 |
| BstUI | CGCG | 4 cut(s) | 299, 520, 2472, 3657 |
| BstV2I | GAAGAC | 4 cut(s) | 860, 1025, 1484, 3586 |
| BstX2I | RGATCY | 8 cut(s) | 259, 712, 1628, 1864, 1876, 3286, 4036, 4501 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 817 |
| BstYI | RGATCY | 8 cut(s) | 259, 712, 1628, 1864, 1876, 3286, 4036, 4501 |
| BstZ17I | GTATAC | 2 cut(s) | 1066, 4383 |
| BstZI | CGGCCG | 1 cut(s) | 162 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1689, 2701 |
| BsuI | GTATCC | 2 cut(s) | 983, 3765 |
| BtgI | CCRYGG | 1 cut(s) | 297 |
| BtgZI | GCGATG | 3 cut(s) | 88, 1269, 2021 |
| BtsCI | GGATG | 7 cut(s) | 259, 403, 1396, 1942, 2109, 2177, 3239 |
| BtsI | GCAGTG | 3 cut(s) | 2448, 3855, 4503 |
| BtsIMutI | CAGTG | 6 cut(s) | 1787, 2448, 3235, 3855, 4255, 4503 |
| BveI | ACCTGC | 1 cut(s) | 4633 |
| CaiI | CAGNNNCTG | 1 cut(s) | 4223 |
| CciI | TCATGA | 1 cut(s) | 270 |
| CfoI | GCGC | 5 cut(s) | 472, 1258, 2421, 2474, 4332 |
| Cfr10I | RCCGGY | 1 cut(s) | 558 |
| Cfr13I | GGNCC | 6 cut(s) | 352, 422, 908, 1304, 2524, 5074 |
| Cfr42I | CCGCGG | 1 cut(s) | 300 |
| Cfr9I | CCCGGG | 1 cut(s) | 419 |
| CseI | GACGC | 2 cut(s) | 784, 1328 |
| DraI | TTTAAA | 1 cut(s) | 2278 |
| DraIII | CACNNNGTG | 2 cut(s) | 1142, 3104 |
| DriI | GACNNNNNGTC | 2 cut(s) | 655, 1455 |
| EaeI | YGGCCR | 6 cut(s) | 162, 560, 3609, 3665, 3963, 4913 |
| EagI | CGGCCG | 1 cut(s) | 162 |
| Eam1104I | CTCTTC | 5 cut(s) | 2280, 2884, 3322, 3721, 3942 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 655, 1455 |
| EarI | CTCTTC | 5 cut(s) | 2280, 2884, 3322, 3721, 3942 |
| Ecl136II | GAGCTC | 2 cut(s) | 322, 934 |
| EclXI | CGGCCG | 1 cut(s) | 162 |
| Eco130I | CCWWGG | 4 cut(s) | 315, 2959, 4910, 5077 |
| Eco147I | AGGCCT | 1 cut(s) | 3062 |
| Eco24I | GRGCYC | 2 cut(s) | 324, 936 |
| Eco31I | GGTCTC | 1 cut(s) | 4132 |
| Eco32I | GATATC | 2 cut(s) | 1965, 5109 |
| Eco47I | GGWCC | 3 cut(s) | 908, 1304, 2524 |
| Eco47III | AGCGCT | 1 cut(s) | 1257 |
| Eco52I | CGGCCG | 1 cut(s) | 162 |
| Eco53kI | GAGCTC | 2 cut(s) | 322, 934 |
| Eco57I | CTGAAG | 9 cut(s) | 1092, 1194, 2304, 2850, 3141, 3429, 3786, 4361, 4526 |
| Eco81I | CCTNAGG | 2 cut(s) | 1689, 2701 |
| Eco88I | CYCGRG | 1 cut(s) | 419 |
| EcoICRI | GAGCTC | 2 cut(s) | 322, 934 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 534 |
| EcoRI | GAATTC | 1 cut(s) | 667 |
| EcoRII | CCWGG | 5 cut(s) | 1955, 2196, 3243, 3723, 4923 |
| EcoRV | GATATC | 2 cut(s) | 1965, 5109 |
| EcoT14I | CCWWGG | 4 cut(s) | 315, 2959, 4910, 5077 |
| EcoT22I | ATGCAT | 5 cut(s) | 484, 1607, 3691, 4579, 4782 |
| EcoT38I | GRGCYC | 2 cut(s) | 324, 936 |
| ErhI | CCWWGG | 4 cut(s) | 315, 2959, 4910, 5077 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2684, 2716 |
| FaqI | GGGAC | 6 cut(s) | 791, 1462, 1913, 2401, 2537, 2571 |
| FauI | CCCGC | 2 cut(s) | 513, 4111 |
| FauNDI | CATATG | 2 cut(s) | 1846, 2080 |
| FbaI | TGATCA | 4 cut(s) | 2851, 3151, 3748, 4972 |
| FblI | GTMKAC | 3 cut(s) | 1065, 4297, 4382 |
| FokI | GGATG | 7 cut(s) | 266, 410, 1403, 1949, 2116, 2164, 3226 |
| FriOI | GRGCYC | 2 cut(s) | 324, 936 |
| FspI | TGCGCA | 1 cut(s) | 2420 |
| GlaI | GCGC | 5 cut(s) | 471, 1257, 2420, 2473, 4331 |
| GsaI | CCCAGC | 3 cut(s) | 207, 3700, 4400 |
| GsuI | CTGGAG | 4 cut(s) | 21, 3266, 4930, 5109 |
| HaeII | RGCGCY | 2 cut(s) | 1259, 4333 |
| HapII | CCGG | 9 cut(s) | 18, 137, 420, 559, 772, 799, 962, 2946, 4714 |
| HgaI | GACGC | 2 cut(s) | 784, 1328 |
| HhaI | GCGC | 5 cut(s) | 472, 1258, 2421, 2474, 4332 |
| Hin1I | GRCGYC | 2 cut(s) | 5, 3252 |
| Hin6I | GCGC | 5 cut(s) | 470, 1256, 2419, 2472, 4330 |
| HinP1I | GCGC | 5 cut(s) | 470, 1256, 2419, 2472, 4330 |
| HincII | GTYRAC | 4 cut(s) | 2352, 3211, 4298, 5040 |
| HindII | GTYRAC | 4 cut(s) | 2352, 3211, 4298, 5040 |
| HindIII | AAGCTT | 3 cut(s) | 278, 1176, 1569 |
| HpaII | CCGG | 9 cut(s) | 18, 137, 420, 559, 772, 799, 962, 2946, 4714 |
| HphI | GGTGA | 6 cut(s) | 1450, 1663, 1972, 2935, 4476, 4790 |
| Hpy166II | GTNNAC | 8 cut(s) | 492, 1066, 1136, 2352, 3211, 4298, 4383, 5040 |
| Hpy8I | GTNNAC | 8 cut(s) | 492, 1066, 1136, 2352, 3211, 4298, 4383, 5040 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 77 |
| HpyCH4IV | ACGT | 3 cut(s) | 3252, 3535, 5063 |
| HpySE526I | ACGT | 3 cut(s) | 3252, 3535, 5063 |
| Hsp92I | GRCGYC | 2 cut(s) | 5, 3252 |
| HspAI | GCGC | 5 cut(s) | 470, 1256, 2419, 2472, 4330 |
| Kpn2I | TCCGGA | 1 cut(s) | 17 |
| Ksp22I | TGATCA | 4 cut(s) | 2851, 3151, 3748, 4972 |
| KspI | CCGCGG | 1 cut(s) | 300 |
| MaeII | ACGT | 3 cut(s) | 3252, 3535, 5063 |
| MaeIII | GTNAC | 9 cut(s) | 647, 1292, 1853, 1981, 3439, 3517, 3631, 4303, 4482 |
| MfeI | CAATTG | 5 cut(s) | 27, 2528, 2667, 2994, 3941 |
| MflI | RGATCY | 8 cut(s) | 259, 712, 1628, 1864, 1876, 3286, 4036, 4501 |
| MhlI | GDGCHC | 8 cut(s) | 324, 936, 1138, 2959, 3578, 3997, 4621, 5069 |
| MlsI | TGGCCA | 4 cut(s) | 3611, 3667, 3965, 4915 |
| MluNI | TGGCCA | 4 cut(s) | 3611, 3667, 3965, 4915 |
| MlyI | GAGTC | 7 cut(s) | 142, 240, 2297, 3318, 4322, 4487, 4875 |
| MmeI | TCCRAC | 8 cut(s) | 214, 991, 2156, 3048, 4012, 4343, 4726, 5002 |
| Mox20I | TGGCCA | 4 cut(s) | 3611, 3667, 3965, 4915 |
| Mph1103I | ATGCAT | 5 cut(s) | 484, 1607, 3691, 4579, 4782 |
| MroI | TCCGGA | 1 cut(s) | 17 |
| MroXI | GAANNNNTTC | 2 cut(s) | 405, 3831 |
| MscI | TGGCCA | 4 cut(s) | 3611, 3667, 3965, 4915 |
| MslI | CAYNNNNRTG | 1 cut(s) | 4680 |
| Msp20I | TGGCCA | 4 cut(s) | 3611, 3667, 3965, 4915 |
| MspA1I | CMGCKG | 9 cut(s) | 299, 1747, 2009, 2870, 3377, 3407, 3617, 4220, 4950 |
| MspCI | CTTAAG | 1 cut(s) | 1868 |
| MspI | CCGG | 9 cut(s) | 18, 137, 420, 559, 772, 799, 962, 2946, 4714 |
| MspR9I | CCNGG | 9 cut(s) | 420, 421, 772, 799, 1957, 2198, 3245, 3725, 4925 |
| MunI | CAATTG | 5 cut(s) | 27, 2528, 2667, 2994, 3941 |
| Mva1269I | GAATGC | 2 cut(s) | 3038, 4007 |
| MvaI | CCWGG | 5 cut(s) | 1957, 2198, 3245, 3725, 4925 |
| MvnI | CGCG | 4 cut(s) | 299, 520, 2472, 3657 |
| NciI | CCSGG | 4 cut(s) | 420, 421, 772, 799 |
| NdeI | CATATG | 2 cut(s) | 1846, 2080 |
| NlaIV | GGNNCC | 7 cut(s) | 36, 261, 1785, 2525, 2655, 4264, 4503 |
| NmeAIII | GCCGAG | 4 cut(s) | 140, 1188, 2383, 3595 |
| NmuCI | GTSAC | 4 cut(s) | 647, 1853, 3439, 4482 |
| NsbI | TGCGCA | 1 cut(s) | 2420 |
| NsiI | ATGCAT | 5 cut(s) | 484, 1607, 3691, 4579, 4782 |
| NspI | RCATGY | 8 cut(s) | 512, 2306, 2634, 3518, 3734, 4304, 4652, 4780 |
| NspV | TTCGAA | 2 cut(s) | 2245, 3584 |
| PagI | TCATGA | 1 cut(s) | 270 |
| PceI | AGGCCT | 1 cut(s) | 3062 |
| PciI | ACATGT | 3 cut(s) | 508, 3730, 4300 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 167, 4695 |
| PctI | GAATGC | 2 cut(s) | 3038, 4007 |
| PdmI | GAANNNNTTC | 2 cut(s) | 405, 3831 |
| PflFI | GACNNNGTC | 3 cut(s) | 2145, 2192, 4820 |
| PfoI | TCCNGGA | 2 cut(s) | 2196, 3723 |
| PleI | GAGTC | 7 cut(s) | 141, 239, 2296, 3317, 4321, 4486, 4874 |
| PpsI | GAGTC | 7 cut(s) | 141, 239, 2296, 3317, 4321, 4486, 4874 |
| PscI | ACATGT | 3 cut(s) | 508, 3730, 4300 |
| PshBI | ATTAAT | 1 cut(s) | 2481 |
| Psp124BI | GAGCTC | 2 cut(s) | 324, 936 |
| Psp6I | CCWGG | 5 cut(s) | 1955, 2196, 3243, 3723, 4923 |
| PspFI | CCCAGC | 3 cut(s) | 203, 3696, 4396 |
| PspGI | CCWGG | 5 cut(s) | 1955, 2196, 3243, 3723, 4923 |
| PspN4I | GGNNCC | 7 cut(s) | 36, 261, 1785, 2525, 2655, 4264, 4503 |
| PspPI | GGNCC | 6 cut(s) | 352, 422, 908, 1304, 2524, 5074 |
| PstI | CTGCAG | 2 cut(s) | 4219, 4453 |
| PstNI | CAGNNNCTG | 1 cut(s) | 4223 |
| PsuI | RGATCY | 8 cut(s) | 259, 712, 1628, 1864, 1876, 3286, 4036, 4501 |
| PsyI | GACNNNGTC | 3 cut(s) | 2145, 2192, 4820 |
| PvuII | CAGCTG | 8 cut(s) | 1747, 2009, 2870, 3377, 3407, 3617, 4220, 4950 |
| RseI | CAYNNNNRTG | 1 cut(s) | 4680 |
| SacI | GAGCTC | 2 cut(s) | 324, 936 |
| SacII | CCGCGG | 1 cut(s) | 300 |
| SalI | GTCGAC | 1 cut(s) | 4296 |
| Sau96I | GGNCC | 6 cut(s) | 352, 422, 908, 1304, 2524, 5074 |
| ScaI | AGTACT | 2 cut(s) | 1770, 4720 |
| SchI | GAGTC | 7 cut(s) | 142, 240, 2297, 3318, 4322, 4487, 4875 |
| ScrFI | CCNGG | 9 cut(s) | 420, 421, 772, 799, 1957, 2198, 3245, 3725, 4925 |
| SduI | GDGCHC | 8 cut(s) | 324, 936, 1138, 2959, 3578, 3997, 4621, 5069 |
| SfcI | CTRYAG | 6 cut(s) | 735, 3226, 3282, 4215, 4246, 4449 |
| Sfr303I | CCGCGG | 1 cut(s) | 300 |
| SfuI | TTCGAA | 2 cut(s) | 2245, 3584 |
| SgrBI | CCGCGG | 1 cut(s) | 300 |
| SinI | GGWCC | 3 cut(s) | 908, 1304, 2524 |
| SmaI | CCCGGG | 1 cut(s) | 421 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 4680 |
| SmlI | CTYRAG | 6 cut(s) | 1868, 2839, 2921, 4040, 4475, 4637 |
| SmoI | CTYRAG | 6 cut(s) | 1868, 2839, 2921, 4040, 4475, 4637 |
| SpeI | ACTAGT | 1 cut(s) | 3578 |
| SrfI | GCCCGGGC | 1 cut(s) | 421 |
| SseBI | AGGCCT | 1 cut(s) | 3062 |
| SspI | AATATT | 3 cut(s) | 405, 816, 4407 |
| SstI | GAGCTC | 2 cut(s) | 324, 936 |
| StuI | AGGCCT | 1 cut(s) | 3062 |
| StyD4I | CCNGG | 9 cut(s) | 418, 419, 770, 797, 1955, 2196, 3243, 3723, 4923 |
| StyI | CCWWGG | 4 cut(s) | 315, 2959, 4910, 5077 |
| TaiI | ACGT | 3 cut(s) | 3255, 3538, 5066 |
| TaqII | GACCGA | 2 cut(s) | 714, 4156 |
| TatI | WGTACW | 7 cut(s) | 892, 1768, 2633, 2905, 2978, 4351, 4718 |
| TauI | GCSGC | 3 cut(s) | 35, 2336, 2489 |
| TscAI | CASTG | 6 cut(s) | 1794, 2455, 3235, 3862, 4255, 4503 |
| TseFI | GTSAC | 4 cut(s) | 647, 1853, 3439, 4482 |
| Tsp45I | GTSAC | 4 cut(s) | 647, 1853, 3439, 4482 |
| TspGWI | ACGGA | 6 cut(s) | 196, 1296, 2075, 2337, 4623, 4848 |
| TspMI | CCCGGG | 1 cut(s) | 419 |
| TspRI | CASTG | 6 cut(s) | 1794, 2455, 3235, 3862, 4255, 4503 |
| Tth111I | GACNNNGTC | 3 cut(s) | 2145, 2192, 4820 |
| Vha464I | CTTAAG | 1 cut(s) | 1868 |
| VneI | GTGCAC | 1 cut(s) | 1134 |
| VpaK11BI | GGWCC | 3 cut(s) | 908, 1304, 2524 |
| VspI | ATTAAT | 1 cut(s) | 2481 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 534 |
| XapI | RAATTY | 4 cut(s) | 427, 667, 923, 3016 |
| XceI | RCATGY | 8 cut(s) | 512, 2306, 2634, 3518, 3734, 4304, 4652, 4780 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4495 |
| XmaI | CCCGGG | 1 cut(s) | 419 |
| XmiI | GTMKAC | 3 cut(s) | 1065, 4297, 4382 |
| XmnI | GAANNNNTTC | 2 cut(s) | 405, 3831 |
| ZraI | GACGTC | 1 cut(s) | 3253 |
| ZrmI | AGTACT | 2 cut(s) | 1770, 4720 |
| Zsp2I | ATGCAT | 5 cut(s) | 484, 1607, 3691, 4579, 4782 |