Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8323907.1

Orthogroup ID

OG0004148

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 918

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8323907.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 269 bp

atgcaggcgctggctcttctaactgcattccaagtgttctgtgaatgtgttggagatcttgagatgggaaagattttggctcgagatggagagcaaaatgaaaatgagaggtggatcaatcttattggagacatagcaggctgcatttctataaagagaccgaaagaggttcaacggatatgtgtaatttttagtaaatcattagatcgacaccaaagattccaaagggaagctgcagctgctgcattgtcagagtttatccgctacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cnd1

Protein Analysis

89

Amino Acids

10.14

Weight (kDa)

6.56

Isoelectric Point (pI)

26.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36810 AT2G36810 AT2G36810
fragaria_vesca	FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010
malus_domestica	MD12G1104900.v1.1 MD12G1105200.v1.1
prunus_persica	Prupe.7G124700_v2.0.a1 Prupe.7G124700_v2.0.a1
pyrus_communis	pycom12g10320 pycom12g10330 pycom12g10430
rosa_chinensis	RchiOBHm_Chr3g0471001
rosa_laevigata	RLG00000024210
rosa_multiflora	Rmu_co8323907.1_g000001 Rmu_co8431237.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410320
rosa_rugosa	Rorug03G0114800
rosa_samantha	Rh3AG164300 Rh3BG190000 Rh3CG179900 Rh3DG186200
rosa_wichuraiana	Rw3G015450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	2 cut(s)	233, 239
AluI	AGCT	2 cut(s)	233, 239
Alw26I	GTCTC	2 cut(s)	123, 151
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	2 cut(s)	10, 242
Ama87I	CYCGRG	1 cut(s)	81
ApeKI	GCWGC	5 cut(s)	141, 233, 236, 239, 242
AspLEI	GCGC	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	81
BbvI	GCAGC	5 cut(s)	128, 220, 226, 229, 248
BccI	CCATC	2 cut(s)	58, 80
BcoDI	GTCTC	2 cut(s)	123, 151
BfmI	CTRYAG	2 cut(s)	234, 265
BfoI	RGCGCY	1 cut(s)	11
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	5 cut(s)	142, 234, 237, 240, 243
BlsI	GCNGC	5 cut(s)	143, 235, 238, 241, 244
BmeT110I	CYCGRG	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	151
BseXI	GCAGC	5 cut(s)	128, 220, 226, 229, 248
BsiHKCI	CYCGRG	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	123, 151
BsmI	GAATGC	1 cut(s)	26
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	55, 114, 205
BspACI	CCGC	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	151
BssMI	GATC	3 cut(s)	55, 114, 205
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	3 cut(s)	6, 12, 139
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	3 cut(s)	58, 117, 208
BstMAI	GTCTC	2 cut(s)	123, 151
BstMBI	GATC	3 cut(s)	55, 114, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 242
BstSFI	CTRYAG	2 cut(s)	234, 265
BstV1I	GCAGC	5 cut(s)	128, 220, 226, 229, 248
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	6, 12, 139
CaiI	CAGNNNCTG	2 cut(s)	10, 242
CfoI	GCGC	1 cut(s)	10
CviJI	RGCY	5 cut(s)	14, 80, 141, 233, 239
CviKI_1	RGCY	5 cut(s)	14, 80, 141, 233, 239
DpnI	GATC	3 cut(s)	57, 116, 207
DpnII	GATC	3 cut(s)	55, 114, 205
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	81
FaiI	YATR	3 cut(s)	134, 152, 181
Fnu4HI	GCNGC	5 cut(s)	142, 234, 237, 240, 243
Fsp4HI	GCNGC	5 cut(s)	142, 234, 237, 240, 243
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	5 cut(s)	142, 234, 237, 240, 243
HaeII	RGCGCY	1 cut(s)	11
HhaI	GCGC	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	2 cut(s)	59, 83
HpyCH4V	TGCA	5 cut(s)	4, 26, 144, 236, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 242
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	3 cut(s)	55, 114, 205
LguI	GCTCTTC	1 cut(s)	21
LpnPI	CCDG	1 cut(s)	123
Lsp1109I	GCAGC	5 cut(s)	128, 220, 226, 229, 248
MalI	GATC	3 cut(s)	57, 116, 207
MboI	GATC	3 cut(s)	55, 114, 205
MboII	GAAGA	1 cut(s)	8
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	2 cut(s)	102, 160
MspA1I	CMGCKG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	239, 242
NdeII	GATC	3 cut(s)	55, 114, 205
PaeR7I	CTCGAG	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	21
PctI	GAATGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	219
PkrI	GCNGC	5 cut(s)	143, 235, 238, 241, 244
PstI	CTGCAG	1 cut(s)	238
PstNI	CAGNNNCTG	2 cut(s)	10, 242
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	21
SatI	GCNGC	5 cut(s)	142, 234, 237, 240, 243
Sau3AI	GATC	3 cut(s)	55, 114, 205
SetI	ASST	4 cut(s)	113, 171, 235, 241
SfcI	CTRYAG	2 cut(s)	234, 265
Sfr274I	CTCGAG	1 cut(s)	81
SgeI	CNNG	7 cut(s)	17, 23, 44, 71, 93, 95, 150
SlaI	CTCGAG	1 cut(s)	81
SmlI	CTYRAG	2 cut(s)	59, 81
SmoI	CTYRAG	2 cut(s)	59, 81
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	1 cut(s)	262
TaqI	TCGA	2 cut(s)	82, 208
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	219
TseI	GCWGC	5 cut(s)	141, 233, 236, 239, 242
TspDTI	ATGAA	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	190
XhoI	CTCGAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.