Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004148

Physical Location & Seq

Genomic Coordinates Forward (+)

9322513 .. 9323145

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0114800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTTGTTCCGTGGCTTTCCCTATTCCTGTTTTGCATCCCCGGGGCTGCAATAAATTTTTGTACCTGAGCAACCCCTGCATTTCCTTGCCAAAGCTTGGCTACAGTTCACTGAATCACAACCGATTTCGACGATTGTCTTCGATCGATGGCAACAACTCTGGTAGTGGTTTGTCTGATTCTGAAAGCTTGTCCTTTAGACCTGAAGATTCAAGTGGAAATAGTGATAGTGGTCAAGGACGCACTGCGACATCCAATGAGACTTTGAAGAAACTGAGGAGATATGGGATTGCTGGATTGTTGTCATATGGGTTATTGAATACTGCCTACTATCTTACGACATTTCTCTTTGTGTGGTTCTATGTTGCACCAACACCTGGAAGGATGGGTTACCTTGCTGCTGCTCAGCGATTTCTTAAAATAATGGCCATGGTGTGGGCTGGTAGCCAGGTTACTAAGCTTATACGAGCTGGAGGAGCCCTTGCTCTTGCTCCTTTTGTGGACAGGGGATTGTCTTGGTTCACTATCAAGTTCCATTTTGAGTCTCAGGGAAAGGCTTTTGCGGCAATTGTTGGAGTTTGCTTTGGACTGGCCTTGGTTTTGTTTTTCGCTGTAACATTGCTTTGGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cnd1

Protein Analysis

210

Amino Acids

22.9

Weight (kDa)

9.83

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36810 AT2G36810 AT2G36810
fragaria_vesca	FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010
malus_domestica	MD12G1104900.v1.1 MD12G1105200.v1.1
prunus_persica	Prupe.7G124700_v2.0.a1 Prupe.7G124700_v2.0.a1
pyrus_communis	pycom12g10320 pycom12g10330 pycom12g10430
rosa_chinensis	RchiOBHm_Chr3g0471001
rosa_laevigata	RLG00000024210
rosa_multiflora	Rmu_co8323907.1_g000001 Rmu_co8431237.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410320
rosa_rugosa	Rorug03G0114800
rosa_samantha	Rh3AG164300 Rh3BG190000 Rh3CG179900 Rh3DG186200
rosa_wichuraiana	Rw3G015450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	98, 377, 435
AciI	CCGC	1 cut(s)	563
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	3 cut(s)	98, 377, 435
AgsI	TTSAA	3 cut(s)	213, 268, 319
AjnI	CCWGG	2 cut(s)	376, 447
AluBI	AGCT	4 cut(s)	97, 189, 460, 470
AluI	AGCT	4 cut(s)	97, 189, 460, 470
Alw26I	GTCTC	2 cut(s)	254, 549
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	2 cut(s)	426, 591
ApeKI	GCWGC	3 cut(s)	48, 398, 401
ApoI	RAATTY	1 cut(s)	56
AsuC2I	CCSGG	2 cut(s)	43, 44
AvaI	CYCGRG	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	35, 385, 388
BccI	CCATC	2 cut(s)	143, 379
BciT130I	CCWGG	2 cut(s)	378, 449
BcnI	CCSGG	2 cut(s)	43, 44
BcoDI	GTCTC	2 cut(s)	254, 549
BfmI	CTRYAG	1 cut(s)	103
BisI	GCNGC	4 cut(s)	49, 399, 402, 564
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	4 cut(s)	50, 400, 403, 565
Bme1390I	CCNGG	4 cut(s)	43, 44, 378, 449
BmeT110I	CYCGRG	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	478
BmrFI	CCNGG	4 cut(s)	43, 44, 378, 449
BmsI	GCATC	1 cut(s)	46
BoxI	GACNNNNGTC	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	68
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuMI	CCSGG	2 cut(s)	43, 44
Bsa29I	ATCGAT	1 cut(s)	147
BsaJI	CCNNGG	6 cut(s)	12, 41, 42, 43, 429, 594
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 377, 435
Bse1I	ACTGG	1 cut(s)	594
Bse3DI	GCAATG	1 cut(s)	617
BseBI	CCWGG	2 cut(s)	378, 449
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	6 cut(s)	12, 41, 42, 43, 429, 594
BseGI	GGATG	3 cut(s)	37, 251, 390
BseLI	CCNNNNNNNGG	3 cut(s)	98, 377, 435
BseMI	GCAATG	1 cut(s)	617
BseMII	CTCAG	4 cut(s)	59, 266, 419, 560
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	2 cut(s)	292, 489
BseXI	GCAGC	3 cut(s)	35, 385, 388
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	428, 593
BshVI	ATCGAT	1 cut(s)	147
BsiEI	CGRYCG	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	98, 377, 435
BsmAI	GTCTC	2 cut(s)	254, 549
BsnI	GGCC	2 cut(s)	428, 593
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	1 cut(s)	144
Bsp1720I	GCTNAGC	1 cut(s)	405
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	1 cut(s)	563
BspANI	GGCC	2 cut(s)	428, 593
BspCNI	CTCAG	4 cut(s)	60, 267, 418, 559
BspDI	ATCGAT	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	617
BsrI	ACTGG	1 cut(s)	594
BssECI	CCNNGG	6 cut(s)	12, 41, 42, 43, 429, 594
BssMI	GATC	1 cut(s)	144
BssT1I	CCWWGG	2 cut(s)	429, 594
Bst2UI	CCWGG	2 cut(s)	378, 449
Bst4CI	ACNGT	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	78
BstDEI	CTNAG	5 cut(s)	68, 275, 405, 456, 546
BstDSI	CCRYGG	2 cut(s)	12, 429
BstEII	GGTNACC	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	37, 251, 390
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	2 cut(s)	254, 549
BstMBI	GATC	1 cut(s)	144
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 476, 563
BstNI	CCWGG	2 cut(s)	378, 449
BstPAI	GACNNNNGTC	1 cut(s)	136
BstPI	GGTNACC	1 cut(s)	389
BstSCI	CCNGG	4 cut(s)	41, 42, 376, 447
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	3 cut(s)	35, 385, 388
BstV2I	GAAGAC	1 cut(s)	132
Bsu15I	ATCGAT	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	428, 593
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	2 cut(s)	12, 429
BtsCI	GGATG	3 cut(s)	37, 251, 390
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	110, 243
Cfr9I	CCCGGG	1 cut(s)	42
ClaI	ATCGAT	1 cut(s)	147
CseI	GACGC	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	1 cut(s)	430
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	5 cut(s)	68, 275, 405, 456, 546
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EaeI	YGGCCR	1 cut(s)	426
Eco130I	CCWWGG	2 cut(s)	429, 594
Eco24I	GRGCYC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	42
Eco91I	GGTNACC	1 cut(s)	389
EcoO65I	GGTNACC	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	376, 447
EcoT14I	CCWWGG	2 cut(s)	429, 594
EcoT38I	GRGCYC	1 cut(s)	481
ErhI	CCWWGG	2 cut(s)	429, 594
FaeI	CATG	1 cut(s)	433
FaiI	YATR	6 cut(s)	285, 307, 309, 363, 431, 464
FatI	CATG	1 cut(s)	429
FauNDI	CATATG	1 cut(s)	307
Fnu4HI	GCNGC	4 cut(s)	49, 399, 402, 564
FokI	GGATG	3 cut(s)	24, 238, 397
FriOI	GRGCYC	1 cut(s)	481
Fsp4HI	GCNGC	4 cut(s)	49, 399, 402, 564
GluI	GCNGC	4 cut(s)	49, 399, 402, 564
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	428, 593
HapII	CCGG	1 cut(s)	43
HgaI	GACGC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	433
HindIII	AAGCTT	3 cut(s)	95, 187, 458
HinfI	GANTC	4 cut(s)	115, 179, 209, 542
HpaII	CCGG	1 cut(s)	43
Hpy166II	GTNNAC	3 cut(s)	110, 502, 522
Hpy188I	TCNGA	2 cut(s)	178, 184
Hpy8I	GTNNAC	3 cut(s)	110, 502, 522
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	375
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4V	TGCA	4 cut(s)	37, 51, 81, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 476, 563
HpyF3I	CTNAG	5 cut(s)	68, 275, 405, 456, 546
Hsp92II	CATG	1 cut(s)	433
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	2 cut(s)	476, 496
Lsp1109I	GCAGC	3 cut(s)	35, 385, 388
LweI	GCATC	1 cut(s)	46
MaeIII	GTNAC	3 cut(s)	389, 451, 613
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	3 cut(s)	132, 218, 280
MfeI	CAATTG	1 cut(s)	567
MhlI	GDGCHC	1 cut(s)	481
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	2 cut(s)	56, 567
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	2 cut(s)	270, 467
Mox20I	TGGCCA	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	1 cut(s)	417
Msp20I	TGGCCA	1 cut(s)	428
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	4 cut(s)	43, 44, 378, 449
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	2 cut(s)	378, 449
MwoI	GCNNNNNNNGC	3 cut(s)	78, 476, 563
NciI	CCSGG	2 cut(s)	43, 44
NcoI	CCATGG	1 cut(s)	429
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	1 cut(s)	433
NlaIV	GGNNCC	1 cut(s)	478
PfeI	GAWTC	3 cut(s)	115, 179, 209
PflMI	CCANNNNNTGG	3 cut(s)	98, 377, 435
PkrI	GCNGC	4 cut(s)	50, 400, 403, 565
Ple19I	CGATCG	1 cut(s)	147
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
PshAI	GACNNNNGTC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	376, 447
PspEI	GGTNACC	1 cut(s)	389
PspGI	CCWGG	2 cut(s)	376, 447
PspN4I	GGNNCC	1 cut(s)	478
PvuI	CGATCG	1 cut(s)	147
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	4 cut(s)	49, 399, 402, 564
Sau3AI	GATC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	4 cut(s)	43, 44, 378, 449
SduI	GDGCHC	1 cut(s)	481
SetI	ASST	9 cut(s)	69, 99, 191, 205, 379, 396, 453, 462, 472
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	103
SmaI	CCCGGG	1 cut(s)	44
Sse9I	AATT	2 cut(s)	56, 567
SsiI	CCGC	1 cut(s)	563
StyD4I	CCNGG	4 cut(s)	41, 42, 376, 447
StyI	CCWWGG	2 cut(s)	429, 594
TaaI	ACNGT	1 cut(s)	107
TaqI	TCGA	3 cut(s)	130, 143, 147
TasI	AATT	2 cut(s)	56, 567
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	3 cut(s)	115, 179, 209
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	2 cut(s)	117, 250
TseI	GCWGC	3 cut(s)	48, 398, 401
TspMI	CCCGGG	1 cut(s)	42
TspRI	CASTG	2 cut(s)	117, 250
Van91I	CCANNNNNTGG	3 cut(s)	98, 377, 435
XapI	RAATTY	1 cut(s)	56
XmaI	CCCGGG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.