Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004148

Physical Location & Seq

Genomic Coordinates Reverse (-)

12438282 .. 12440440

Gene Structure 2159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10430.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAAGGGGTTCTTTGCTTTACCAAATGATCCAGTGGATGTTATCAATCCTCTTATCGACAACCTTATCACTCTCCTGTGTGCAATTCTTCTTACAAGCGGAGAAGATGGGAGAAGTCGAGCAGAGCAGTTATCCCATATCTTGAGACAAATTGACCAGTATGTTTCTTCACCTGTGGATTGTCAAAGGCGAAGAGGTTGTCTTGCAGTACATGAGATACTTCTCAAGTTTCGGATAGTTTGCACCACTGCAAATTGTGCCCTGTGCTGCCAAGGAAGTTGCAGGCACAGCAAGCAAATTGACCGTAATTTGCATAGGAACTTTTCCAACTTACCATCTGCATTTGTATTGCCAAGTCGTGAGGCATTGTCCTTGGGAGACAGGGTCATTATGTATCTTCCACTTTGTGCAGACACTAACTCAGAAGTTAGAAAAGCCTCCGCTCAGATTCTTGATCAACTTTTTAGCATTGCAGTTTCACTTCCACAGCCTTCAACTACTAGCTACGGCGTGGACATAGAAATATCCTACAGGGCTTTATCATCGCTTGAGGATGTCATAGCTATTTCGAAGAGTGATGCTTCTATAGATCCATCTGAGGTTTTTCAACAGAATTATTTCCTCTGTCTGTATATTACTAACAAAGAGGGAGCTAGTAGCCACCCTGCATGGTTGCACAGCAGCTGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cnd1

Protein Analysis

231

Amino Acids

25.46

Weight (kDa)

6.05

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36810 AT2G36810 AT2G36810
fragaria_vesca	FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010
malus_domestica	MD12G1104900.v1.1 MD12G1105200.v1.1
prunus_persica	Prupe.7G124700_v2.0.a1 Prupe.7G124700_v2.0.a1
pyrus_communis	pycom12g10320 pycom12g10330 pycom12g10430
rosa_chinensis	RchiOBHm_Chr3g0471001
rosa_laevigata	RLG00000024210
rosa_multiflora	Rmu_co8323907.1_g000001 Rmu_co8431237.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410320
rosa_rugosa	Rorug03G0114800
rosa_samantha	Rh3AG164300 Rh3BG190000 Rh3CG179900 Rh3DG186200
rosa_wichuraiana	Rw3G015450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	443
AciI	CCGC	2 cut(s)	99, 441
AclWI	GGATC	2 cut(s)	23, 584
AdeI	CACNNNGTG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	495, 608
AluBI	AGCT	4 cut(s)	504, 563, 653, 684
AluI	AGCT	4 cut(s)	504, 563, 653, 684
Alw26I	GTCTC	2 cut(s)	139, 372
AlwI	GGATC	2 cut(s)	23, 584
AlwNI	CAGNNNCTG	1 cut(s)	684
ApeKI	GCWGC	2 cut(s)	267, 681
ArsI	GACNNNNNNTTYG	2 cut(s)	184, 216
Asp700I	GAANNNNTTC	2 cut(s)	8, 617
AsuHPI	GGTGA	1 cut(s)	162
AsuII	TTCGAA	1 cut(s)	569
BaeGI	GKGCMC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	3 cut(s)	101, 343, 601
BceAI	ACGGC	1 cut(s)	523
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	2 cut(s)	139, 372
BfaI	CTAG	2 cut(s)	501, 654
BfmI	CTRYAG	2 cut(s)	529, 585
BisI	GCNGC	2 cut(s)	268, 682
BlsI	GCNGC	2 cut(s)	269, 683
BmsI	GCATC	1 cut(s)	568
Bpu14I	TTCGAA	1 cut(s)	569
BpuEI	CTTGAG	3 cut(s)	163, 209, 569
BsaJI	CCNNGG	2 cut(s)	271, 372
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bse1I	ACTGG	2 cut(s)	32, 157
Bse3DI	GCAATG	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	271, 372
BseGI	GGATG	2 cut(s)	43, 559
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	3 cut(s)	435, 458, 588
BseNI	ACTGG	2 cut(s)	32, 157
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	254
BsgI	GTGCAG	1 cut(s)	429
BsmAI	GTCTC	2 cut(s)	139, 372
Bsp119I	TTCGAA	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	28, 454, 589
BspACI	CCGC	2 cut(s)	99, 441
BspCNI	CTCAG	3 cut(s)	434, 457, 589
BspPI	GGATC	2 cut(s)	23, 584
BspT104I	TTCGAA	1 cut(s)	569
BsrBI	CCGCTC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	32, 157
BssECI	CCNNGG	2 cut(s)	271, 372
BssMI	GATC	3 cut(s)	28, 454, 589
BssT1I	CCWWGG	2 cut(s)	271, 372
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	2 cut(s)	187, 566
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstBI	TTCGAA	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	284, 293
BstDEI	CTNAG	3 cut(s)	421, 444, 597
BstF5I	GGATG	2 cut(s)	43, 559
BstKTI	GATC	3 cut(s)	31, 457, 592
BstMAI	GTCTC	2 cut(s)	139, 372
BstMBI	GATC	3 cut(s)	28, 454, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 288, 292
BstSFI	CTRYAG	2 cut(s)	529, 585
BstSLI	GKGCMC	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BtgZI	GCGATG	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	43, 559
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	39, 246
Cac8I	GCNNGC	2 cut(s)	284, 293
CaiI	CAGNNNCTG	1 cut(s)	684
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	2 cut(s)	212, 669
CviJI	RGCY	8 cut(s)	437, 490, 504, 536, 563, 653, 660, 684
CviKI_1	RGCY	8 cut(s)	437, 490, 504, 536, 563, 653, 660, 684
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	3 cut(s)	421, 444, 597
DpnI	GATC	3 cut(s)	30, 456, 591
DpnII	GATC	3 cut(s)	28, 454, 589
DraIII	CACNNNGTG	1 cut(s)	407
Eam1104I	CTCTTC	2 cut(s)	187, 566
EarI	CTCTTC	2 cut(s)	187, 566
Eco130I	CCWWGG	2 cut(s)	271, 372
EcoT14I	CCWWGG	2 cut(s)	271, 372
ErhI	CCWWGG	2 cut(s)	271, 372
FaeI	CATG	2 cut(s)	215, 672
FalI	AAGNNNNNCTT	1 cut(s)	28
FatI	CATG	2 cut(s)	211, 668
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	268, 682
FokI	GGATG	2 cut(s)	50, 566
Fsp4HI	GCNGC	2 cut(s)	268, 682
FspBI	CTAG	2 cut(s)	501, 654
GluI	GCNGC	2 cut(s)	268, 682
Hin1II	CATG	2 cut(s)	215, 672
HinfI	GANTC	1 cut(s)	448
HphI	GGTGA	1 cut(s)	162
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	4 cut(s)	234, 424, 447, 598
Hpy188III	TCNNGA	3 cut(s)	142, 359, 452
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	1 cut(s)	501
HpyCH4III	ACNGT	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 288, 292
HpyF3I	CTNAG	3 cut(s)	421, 444, 597
Hsp92II	CATG	2 cut(s)	215, 672
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	28, 454, 589
LmnI	GCTCC	1 cut(s)	650
LpnPI	CCDG	9 cut(s)	45, 89, 170, 186, 268, 275, 367, 517, 678
Lsp1109I	GCAGC	1 cut(s)	254
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	2 cut(s)	501, 654
MalI	GATC	3 cut(s)	30, 456, 591
MbiI	CCGCTC	1 cut(s)	443
MboI	GATC	3 cut(s)	28, 454, 589
MboII	GAAGA	6 cut(s)	80, 116, 159, 204, 389, 583
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	6 cut(s)	84, 150, 253, 297, 307, 613
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	8 cut(s)	60, 188, 355, 448, 544, 592, 632, 640
MroXI	GAANNNNTTC	2 cut(s)	8, 617
MspA1I	CMGCKG	1 cut(s)	684
MwoI	GCNNNNNNNGC	3 cut(s)	257, 288, 292
NdeII	GATC	3 cut(s)	28, 454, 589
NlaIII	CATG	2 cut(s)	215, 672
NspV	TTCGAA	1 cut(s)	569
PdmI	GAANNNNTTC	2 cut(s)	8, 617
PfeI	GAWTC	1 cut(s)	448
PflFI	GACNNNGTC	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	269, 683
PstNI	CAGNNNCTG	1 cut(s)	684
PsuI	RGATCY	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	383
PvuII	CAGCTG	1 cut(s)	684
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SatI	GCNGC	2 cut(s)	268, 682
Sau3AI	GATC	3 cut(s)	28, 454, 589
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	8 cut(s)	66, 175, 199, 506, 565, 603, 655, 686
SfaNI	GCATC	1 cut(s)	568
SfcI	CTRYAG	2 cut(s)	529, 585
SfuI	TTCGAA	1 cut(s)	569
SmlI	CTYRAG	3 cut(s)	142, 224, 548
SmoI	CTYRAG	3 cut(s)	142, 224, 548
Sse9I	AATT	6 cut(s)	84, 150, 253, 297, 307, 613
SsiI	CCGC	2 cut(s)	99, 441
SspMI	CTAG	2 cut(s)	501, 654
StyI	CCWWGG	2 cut(s)	271, 372
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	3 cut(s)	57, 118, 569
TasI	AATT	6 cut(s)	84, 150, 253, 297, 307, 613
TatI	WGTACW	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	448
TscAI	CASTG	2 cut(s)	39, 253
TseI	GCWGC	2 cut(s)	267, 681
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	39, 253
Tth111I	GACNNNGTC	1 cut(s)	383
XmnI	GAANNNNTTC	2 cut(s)	8, 617
XspI	CTAG	2 cut(s)	501, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.