Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8431237.1

Orthogroup ID

OG0004148

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1326

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8431237.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 547 bp

atgcttcagtatacaactcaagttctgggcgtaatcttagctttactagatgattctgatgaatctgtgcaattaactgcagttacttgcttacttacgatgctcgagtcatcacccagtgatgcggtggatcccattttgcttaatctttctgtacggcttcgcaatcttcagataagcatgaatccagagatgcgagccaatgcattttcagctttaggatcactttgcaactatggaattggggcacaacatgaggcatttcgtgagcaggtacatgctattatgccacgcttggttctgcatttgcatgataacgattttatcgttcgacaggcttgccggagtactctaaaacaaattgcccccttactggaaatggaaggattatttcccttgttcaacatgcattgtttcaattatgaccaccgaactgactacgaggactttgtcagagaactcacaaggcaatttgcccagcatcttccctcaagagttgattcttacatggcatcgacaattcaggttcccatgctggaattttttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cnd1

Protein Analysis

182

Amino Acids

20.76

Weight (kDa)

5.09

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36810 AT2G36810 AT2G36810
fragaria_vesca	FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010 FvH4_6g17010
malus_domestica	MD12G1104900.v1.1 MD12G1105200.v1.1
prunus_persica	Prupe.7G124700_v2.0.a1 Prupe.7G124700_v2.0.a1
pyrus_communis	pycom12g10320 pycom12g10330 pycom12g10430
rosa_chinensis	RchiOBHm_Chr3g0471001
rosa_laevigata	RLG00000024210
rosa_multiflora	Rmu_co8323907.1_g000001 Rmu_co8431237.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410320
rosa_rugosa	Rorug03G0114800
rosa_samantha	Rh3AG164300 Rh3BG190000 Rh3CG179900 Rh3DG186200
rosa_wichuraiana	Rw3G015450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	3 cut(s)	125, 138, 229
AcsI	RAATTY	1 cut(s)	539
AcuI	CTGAAG	1 cut(s)	155
AdeI	CACNNNGTG	1 cut(s)	119
AfaI	GTAC	3 cut(s)	156, 276, 349
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	403, 418
AluBI	AGCT	2 cut(s)	41, 215
AluI	AGCT	2 cut(s)	41, 215
AlwI	GGATC	3 cut(s)	125, 138, 229
Ama87I	CYCGRG	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	105
AvaI	CYCGRG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	250
BamHI	GGATCC	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	173
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	262
BmcAI	AGTACT	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	132, 528
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	5 cut(s)	90, 112, 183, 490, 521
BmuI	ACTGGG	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	117, 378
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseNI	ACTGG	2 cut(s)	117, 378
BseSI	GKGCMC	1 cut(s)	250
BseYI	CCCAGC	1 cut(s)	477
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	373
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	130, 221
BspACI	CCGC	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	132, 528
BspMAI	CTGCAG	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	3 cut(s)	125, 138, 229
BsrI	ACTGG	2 cut(s)	117, 378
BssMI	GATC	2 cut(s)	130, 221
BssNAI	GTATAC	1 cut(s)	12
Bst1107I	GTATAC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	198, 340
BstDEI	CTNAG	1 cut(s)	37
BstKTI	GATC	2 cut(s)	133, 224
BstMBI	GATC	2 cut(s)	130, 221
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNSI	RCATGY	2 cut(s)	281, 409
BstSFI	CTRYAG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BstZ17I	GTATAC	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	124
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	198, 340
Csp6I	GTAC	3 cut(s)	155, 275, 348
CviAII	CATG	7 cut(s)	181, 254, 278, 311, 406, 508, 532
CviJI	RGCY	5 cut(s)	41, 160, 200, 215, 338
CviKI_1	RGCY	5 cut(s)	41, 160, 200, 215, 338
CviQI	GTAC	3 cut(s)	155, 275, 348
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	2 cut(s)	132, 223
DpnII	GATC	2 cut(s)	130, 221
DraIII	CACNNNGTG	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	104
EcoT22I	ATGCAT	2 cut(s)	208, 411
FaeI	CATG	7 cut(s)	184, 257, 281, 314, 409, 511, 535
FatI	CATG	7 cut(s)	180, 253, 277, 310, 405, 507, 531
FblI	GTMKAC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	47
GsaI	CCCAGC	1 cut(s)	481
HapII	CCGG	1 cut(s)	343
Hin1II	CATG	7 cut(s)	184, 257, 281, 314, 409, 511, 535
HinfI	GANTC	5 cut(s)	53, 62, 107, 184, 500
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	3 cut(s)	58, 174, 455
Hpy188III	TCNNGA	3 cut(s)	188, 266, 492
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	1 cut(s)	377
HpyCH4V	TGCA	7 cut(s)	70, 80, 206, 231, 304, 310, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	37
Hsp92II	CATG	7 cut(s)	184, 257, 281, 314, 409, 511, 535
Kzo9I	GATC	2 cut(s)	130, 221
LweI	GCATC	5 cut(s)	90, 112, 183, 490, 521
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	132, 223
MboI	GATC	2 cut(s)	130, 221
MboII	GAAGA	2 cut(s)	161, 476
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	7 cut(s)	71, 240, 360, 418, 470, 519, 539
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	3 cut(s)	250, 436, 499
Mph1103I	ATGCAT	2 cut(s)	208, 411
MseI	TTAA	2 cut(s)	74, 144
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	2 cut(s)	130, 221
NlaIII	CATG	7 cut(s)	184, 257, 281, 314, 409, 511, 535
NlaIV	GGNNCC	2 cut(s)	132, 528
NsiI	ATGCAT	2 cut(s)	208, 411
NspI	RCATGY	2 cut(s)	281, 409
PaeR7I	CTCGAG	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PfeI	GAWTC	4 cut(s)	53, 62, 184, 500
PflFI	GACNNNGTC	1 cut(s)	449
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	132, 528
PspXI	VCTCGAGB	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	130
PsyI	GACNNNGTC	1 cut(s)	449
RsaI	GTAC	3 cut(s)	156, 276, 349
RsaNI	GTAC	3 cut(s)	155, 275, 348
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	74, 144
Sau3AI	GATC	2 cut(s)	130, 221
ScaI	AGTACT	1 cut(s)	349
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	4 cut(s)	43, 217, 276, 528
SfaNI	GCATC	5 cut(s)	90, 112, 183, 490, 521
SfcI	CTRYAG	1 cut(s)	78
Sfr274I	CTCGAG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	3 cut(s)	18, 104, 490
SmoI	CTYRAG	3 cut(s)	18, 104, 490
Sse9I	AATT	7 cut(s)	71, 240, 360, 418, 470, 519, 539
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	47
TaqI	TCGA	3 cut(s)	105, 331, 515
TasI	AATT	7 cut(s)	71, 240, 360, 418, 470, 519, 539
TatI	WGTACW	1 cut(s)	347
TfiI	GAWTC	4 cut(s)	53, 62, 184, 500
Tru1I	TTAA	2 cut(s)	74, 144
Tru9I	TTAA	2 cut(s)	74, 144
TscAI	CASTG	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	75, 197
TspRI	CASTG	1 cut(s)	124
Tth111I	GACNNNGTC	1 cut(s)	449
XapI	RAATTY	1 cut(s)	539
XceI	RCATGY	2 cut(s)	281, 409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XhoI	CTCGAG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	1 cut(s)	47
ZrmI	AGTACT	1 cut(s)	349
Zsp2I	ATGCAT	2 cut(s)	208, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.