FvH4_6g18211
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016883
Physical Location & Seq
Forward (+)
12021403 .. 12023233
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18211.t1

Sequence Viewer

Length: 477 bp
ATGTCAGATAAGAAATCTGTAAAAAAGTACATGAATGAAAAAGTTCCCAAATCCCTAAACAACTTACTTACTGACCTTGCTCAAATTAACAATGCTTCCGGAAAATTGACGAAGCTAGAAACTTACCTGCAGAAGCATGAGGAAGAGTTGTGTAGAATTCAGGCATTTGATAGAGATCATGATCTGCCTCACTGCATGCTTCTCTTGAAGGATGTTAGCTGCAATATCGAAGATCTTGAGCTAGTTTTCTCTATCAATAATGGCTCGGCATTTGAGTTGCCATATGACCTCCTTGATTGTTCAACTTTGAAGACTCTAAAGATGGACTTGAGCAACAAGACTCTTAGGCTTCCCGCTTTGGTTGTTCCCTCCAATCTCCGGCCAGCGTCTGCATTTGAAGGAAGTTGTCATATCAGAAGAGGTTTGGAAATGGCTCTTCAGCTTACATCTTACAGAATTGCGGTTCAAATTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

159

Amino Acids

17.9

Weight (kDa)

6.89

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 13 - 72 1.5e-15 HHO5-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016883)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18211 FvH4_6g46323
malus_domestica MD17G1066200.v1.1
prunus_persica Prupe.3G248500_v2.0.a1
pyrus_communis pycom17g06640
rosa_laevigata RLG00000021490
rosa_multiflora Rmu_sc0000946.1_g000034
rosa_roxburghii Rroxscaffold_2G00086290
rosa_rugosa Rorug02G0510500
rosa_samantha Rh2AG578600 Rh2BG589900 Rh2CG560500 Rh2DG600100
rosa_wichuraiana Rw2G048040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 135
AccIII TCCGGA 1 cut(s) 98
AciI CCGC 2 cut(s) 354, 461
AcoI YGGCCR 1 cut(s) 380
AcsI RAATTY 2 cut(s) 156, 468
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 378
AgsI TTSAA 5 cut(s) 208, 303, 310, 398, 467
AluBI AGCT 4 cut(s) 115, 219, 241, 442
AluI AGCT 4 cut(s) 115, 219, 241, 442
AlwNI CAGNNNCTG 1 cut(s) 389
Aor13HI TCCGGA 1 cut(s) 98
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 2 cut(s) 156, 468
Asp700I GAANNNNTTC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 206
BccI CCATC 1 cut(s) 316
BfaI CTAG 2 cut(s) 116, 242
BfmI CTRYAG 1 cut(s) 128
BfuAI ACCTGC 1 cut(s) 135
BglII AGATCT 1 cut(s) 232
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 317
BpuEI CTTGAG 2 cut(s) 257, 349
BsaBI GATNNNNATC 2 cut(s) 174, 180
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse8I GATNNNNATC 2 cut(s) 174, 180
BseAI TCCGGA 1 cut(s) 98
BseGI GGATG 1 cut(s) 217
BseJI GATNNNNATC 2 cut(s) 174, 180
BseLI CCNNNNNNNGG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 206
BshFI GGCC 1 cut(s) 382
BsiSI CCGG 2 cut(s) 99, 379
BslI CCNNNNNNNGG 1 cut(s) 378
BsnI GGCC 1 cut(s) 382
Bsp13I TCCGGA 1 cut(s) 98
Bsp143I GATC 3 cut(s) 175, 181, 232
BspACI CCGC 2 cut(s) 354, 461
BspANI GGCC 1 cut(s) 382
BspEI TCCGGA 1 cut(s) 98
BspHI TCATGA 1 cut(s) 178
BspMAI CTGCAG 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 135
BspQI GCTCTTC 1 cut(s) 441
BssMI GATC 3 cut(s) 175, 181, 232
Bst6I CTCTTC 3 cut(s) 138, 412, 441
BstC8I GCNNGC 2 cut(s) 197, 384
BstDEI CTNAG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 3 cut(s) 178, 184, 235
BstMBI GATC 3 cut(s) 175, 181, 232
BstNSI RCATGY 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 382
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 190
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 197, 384
CaiI CAGNNNCTG 1 cut(s) 389
CciI TCATGA 1 cut(s) 178
CseI GACGC 1 cut(s) 375
Csp6I GTAC 1 cut(s) 28
CviAII CATG 4 cut(s) 31, 137, 179, 196
CviJI RGCY 8 cut(s) 115, 219, 241, 264, 349, 382, 434, 442
CviKI_1 RGCY 8 cut(s) 115, 219, 241, 264, 349, 382, 434, 442
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 1 cut(s) 344
DpnI GATC 3 cut(s) 177, 183, 234
DpnII GATC 3 cut(s) 175, 181, 232
EaeI YGGCCR 1 cut(s) 380
Eam1104I CTCTTC 3 cut(s) 138, 412, 441
EarI CTCTTC 3 cut(s) 138, 412, 441
Eco57I CTGAAG 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 156
FaeI CATG 4 cut(s) 34, 140, 182, 199
FaiI YATR 7 cut(s) 32, 138, 180, 197, 283, 285, 411
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 4 cut(s) 30, 136, 178, 195
FauI CCCGC 1 cut(s) 361
FauNDI CATATG 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 2 cut(s) 116, 242
GluI GCNGC 1 cut(s) 220
HaeIII GGCC 1 cut(s) 382
HapII CCGG 2 cut(s) 99, 379
HgaI GACGC 1 cut(s) 375
Hin1II CATG 4 cut(s) 34, 140, 182, 199
HinfI GANTC 2 cut(s) 313, 340
HpaII CCGG 2 cut(s) 99, 379
Hpy188I TCNGA 2 cut(s) 7, 416
Hpy188III TCNNGA 4 cut(s) 99, 179, 205, 236
HpyAV CCTTC 2 cut(s) 202, 392
HpyCH4V TGCA 4 cut(s) 130, 195, 222, 392
HpyF3I CTNAG 1 cut(s) 344
Hsp92II CATG 4 cut(s) 34, 140, 182, 199
Kpn2I TCCGGA 1 cut(s) 98
Kzo9I GATC 3 cut(s) 175, 181, 232
LguI GCTCTTC 1 cut(s) 441
LpnPI CCDG 5 cut(s) 112, 140, 146, 392, 396
Lsp1109I GCAGC 1 cut(s) 206
MaeI CTAG 2 cut(s) 116, 242
MalI GATC 3 cut(s) 177, 183, 234
MboI GATC 3 cut(s) 175, 181, 232
MboII GAAGA 5 cut(s) 155, 242, 322, 428, 429
MflI RGATCY 1 cut(s) 232
MluCI AATT 5 cut(s) 84, 104, 156, 456, 468
MlyI GAGTC 2 cut(s) 307, 334
MnlI CCTC 5 cut(s) 133, 198, 299, 379, 413
MroI TCCGGA 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 2 cut(s) 87, 475
MspI CCGG 2 cut(s) 99, 379
NdeI CATATG 1 cut(s) 283
NdeII GATC 3 cut(s) 175, 181, 232
NlaIII CATG 4 cut(s) 34, 140, 182, 199
NmeAIII GCCGAG 1 cut(s) 245
NspI RCATGY 1 cut(s) 199
PaeI GCATGC 1 cut(s) 199
PagI TCATGA 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 441
PdmI GAANNNNTTC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 221
PleI GAGTC 2 cut(s) 307, 334
PpsI GAGTC 2 cut(s) 307, 334
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 389
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 2 cut(s) 87, 475
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 3 cut(s) 175, 181, 232
SchI GAGTC 2 cut(s) 307, 334
SetI ASST 8 cut(s) 78, 117, 129, 221, 243, 291, 424, 444
SfcI CTRYAG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 236, 328
SmoI CTYRAG 2 cut(s) 236, 328
SphI GCATGC 1 cut(s) 199
Sse9I AATT 5 cut(s) 84, 104, 156, 456, 468
SsiI CCGC 2 cut(s) 354, 461
SspMI CTAG 2 cut(s) 116, 242
TaqI TCGA 1 cut(s) 228
TasI AATT 5 cut(s) 84, 104, 156, 456, 468
TatI WGTACW 1 cut(s) 27
Tru1I TTAA 2 cut(s) 87, 475
Tru9I TTAA 2 cut(s) 87, 475
TscAI CASTG 1 cut(s) 197
TseI GCWGC 1 cut(s) 219
TspDTI ATGAA 2 cut(s) 47, 51
TspRI CASTG 1 cut(s) 197
XapI RAATTY 2 cut(s) 156, 468
XceI RCATGY 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 116, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.