Prupe.3G248500_v2.0.a1
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016883
Physical Location & Seq
Forward (+)
23902168 .. 23903311
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G248500.1

Sequence Viewer

Length: 741 bp
ATGGGTTCAACTTCAAATCCTCTTGAGCTAAATTCTCTTGATCTTGCACTTAGTCTAAAGCCCTCTTATGTCCCAAAATCACTCAATCACTTATTCAGTGATCTGGCAAGTATAGATAATGTTCCACACAAATTGTCTGTTTTGAATGAGTATCTTCTAAAACACCAAGAAGAGCTCCACAGAGTAGAGGAATTTAAAAGAGACCTACCTCAGTGTGTTCTTCTGTTGTTGGATGCTATACAAACACTCAATAACGAAATTGAGAAGTTGAGTGGTCAAGATCAGTTCGATGCATGTAAGAATAGAGGCTCATGTGAGGATCCAGTAGAACGGCGGAGTGCGTTCCGAAAATATAAGAGCTCATCACCTCCGTTTAACCCTAGGCCTCGCAACCAAGATCATACAAGTCAAGACCATAAGGTGAAGGGAAAGGAGCCGATCCTCATGGAGCCAAGTCCCAGGAGGCCTTTCCCATGTGATCTCAACATGGAGGCAAGCGGTTCAGAACTGGAGCTAGAGCCAGAACCAGATCCACAGCCACAGCCAGAGGTACCTCCGCCTATGTGGAAACACAGCAGGTTAAGCTGGACGCAAGAGCTCCACACAAAGTTTGTGGAGGTCTTGAGCATGCTGGGAGGTCCTGCAGAAGCAACTCCAAAACAAATTAGGGAGGCCATGCAGGTCGAGGGGCTTACGAACGACCAAGTGAAGAGTCACCTGCAGGTTGGCTTTGAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

247

Amino Acids

27.94

Weight (kDa)

5.52

Isoelectric Point (pI)

55.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016883)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18211 FvH4_6g46323
malus_domestica MD17G1066200.v1.1
prunus_persica Prupe.3G248500_v2.0.a1
pyrus_communis pycom17g06640
rosa_laevigata RLG00000021490
rosa_multiflora Rmu_sc0000946.1_g000034
rosa_roxburghii Rroxscaffold_2G00086290
rosa_rugosa Rorug02G0510500
rosa_samantha Rh2AG578600 Rh2BG589900 Rh2CG560500 Rh2DG600100
rosa_wichuraiana Rw2G048040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 726
Acc36I ACCTGC 4 cut(s) 567, 670, 712, 726
Acc65I GGTACC 1 cut(s) 550
AccB1I GGYRCC 1 cut(s) 550
AciI CCGC 3 cut(s) 334, 498, 557
AclWI GGATC 4 cut(s) 314, 327, 433, 524
AcsI RAATTY 2 cut(s) 31, 191
AfaI GTAC 1 cut(s) 552
AgsI TTSAA 4 cut(s) 9, 15, 145, 734
AjnI CCWGG 1 cut(s) 458
AluBI AGCT 6 cut(s) 28, 175, 360, 514, 585, 598
AluI AGCT 6 cut(s) 28, 175, 360, 514, 585, 598
Alw21I GWGCWC 3 cut(s) 177, 362, 600
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 4 cut(s) 314, 327, 433, 524
AoxI GGCC 3 cut(s) 383, 464, 672
ApoI RAATTY 2 cut(s) 31, 191
Asp718I GGTACC 1 cut(s) 550
AspA2I CCTAGG 1 cut(s) 380
AspS9I GGNCC 1 cut(s) 638
AsuHPI GGTGA 3 cut(s) 357, 433, 707
AvaII GGWCC 1 cut(s) 638
AvrII CCTAGG 1 cut(s) 380
BamHI GGATCC 1 cut(s) 319
BanI GGYRCC 1 cut(s) 550
BanII GRGCYC 3 cut(s) 177, 362, 600
Bbv12I GWGCWC 3 cut(s) 177, 362, 600
BceAI ACGGC 1 cut(s) 347
BciT130I CCWGG 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 2 cut(s) 381, 515
BfmI CTRYAG 2 cut(s) 642, 719
BfuAI ACCTGC 4 cut(s) 567, 670, 712, 726
BlnI CCTAGG 1 cut(s) 380
Bme1390I CCNGG 1 cut(s) 460
Bme18I GGWCC 1 cut(s) 638
BmgT120I GGNCC 1 cut(s) 638
BmiI GGNNCC 4 cut(s) 321, 435, 450, 552
BmrFI CCNGG 1 cut(s) 460
BmsI GCATC 2 cut(s) 223, 280
BpmI CTGGAG 1 cut(s) 530
BpuEI CTTGAG 2 cut(s) 44, 643
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 380, 458
Bse1I ACTGG 2 cut(s) 323, 513
BseBI CCWGG 1 cut(s) 460
BseDI CCNNGG 2 cut(s) 380, 458
BseGI GGATG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 2 cut(s) 323, 513
BseYI CCCAGC 1 cut(s) 631
BshFI GGCC 3 cut(s) 385, 466, 674
BshNI GGYRCC 1 cut(s) 550
BsiHKAI GWGCWC 3 cut(s) 177, 362, 600
BslFI GGGAC 2 cut(s) 56, 441
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 2 cut(s) 56, 441
BsnI GGCC 3 cut(s) 385, 466, 674
Bso31I GGTCTC 1 cut(s) 195
Bsp1286I GDGCHC 3 cut(s) 177, 362, 600
Bsp143I GATC 8 cut(s) 40, 100, 280, 319, 397, 438, 478, 529
BspACI CCGC 3 cut(s) 334, 498, 557
BspANI GGCC 3 cut(s) 385, 466, 674
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 4 cut(s) 321, 435, 450, 552
BspMAI CTGCAG 2 cut(s) 646, 723
BspMI ACCTGC 4 cut(s) 567, 670, 712, 726
BspPI GGATC 4 cut(s) 314, 327, 433, 524
BspQI GCTCTTC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 550
BspTNI GGTCTC 1 cut(s) 195
BsrI ACTGG 2 cut(s) 323, 513
BssECI CCNNGG 2 cut(s) 380, 458
BssMI GATC 8 cut(s) 40, 100, 280, 319, 397, 438, 478, 529
BssT1I CCWWGG 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 460
Bst6I CTCTTC 2 cut(s) 165, 704
BstC8I GCNNGC 2 cut(s) 496, 629
BstDEI CTNAG 2 cut(s) 50, 210
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 8 cut(s) 43, 103, 283, 322, 400, 441, 481, 532
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 8 cut(s) 40, 100, 280, 319, 397, 438, 478, 529
BstMWI GCNNNNNNNGC 1 cut(s) 582
BstNI CCWGG 1 cut(s) 460
BstNSI RCATGY 2 cut(s) 297, 631
BstSCI CCNGG 1 cut(s) 458
BstSFI CTRYAG 2 cut(s) 642, 719
BstX2I RGATCY 2 cut(s) 319, 529
BstYI RGATCY 2 cut(s) 319, 529
BsuRI GGCC 3 cut(s) 385, 466, 674
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 103, 218
BveI ACCTGC 4 cut(s) 567, 670, 712, 726
Cac8I GCNNGC 2 cut(s) 496, 629
Cfr13I GGNCC 1 cut(s) 638
CseI GACGC 1 cut(s) 598
Csp6I GTAC 1 cut(s) 551
CspCI CAANNNNNGTGG 4 cut(s) 114, 149, 594, 629
CviAII CATG 7 cut(s) 294, 312, 445, 474, 487, 628, 676
CviQI GTAC 1 cut(s) 551
DdeI CTNAG 2 cut(s) 50, 210
DpnI GATC 8 cut(s) 42, 102, 282, 321, 399, 440, 480, 531
DpnII GATC 8 cut(s) 40, 100, 280, 319, 397, 438, 478, 529
DraI TTTAAA 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 165, 704
EarI CTCTTC 2 cut(s) 165, 704
EciI GGCGGA 2 cut(s) 349, 546
Ecl136II GAGCTC 3 cut(s) 175, 360, 598
Eco130I CCWWGG 1 cut(s) 380
Eco147I AGGCCT 2 cut(s) 385, 466
Eco24I GRGCYC 3 cut(s) 177, 362, 600
Eco31I GGTCTC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 638
Eco53kI GAGCTC 3 cut(s) 175, 360, 598
EcoICRI GAGCTC 3 cut(s) 175, 360, 598
EcoO109I RGGNCCY 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 380
EcoT22I ATGCAT 1 cut(s) 295
EcoT38I GRGCYC 3 cut(s) 177, 362, 600
ErhI CCWWGG 1 cut(s) 380
FaeI CATG 7 cut(s) 297, 315, 448, 477, 490, 631, 679
FaqI GGGAC 2 cut(s) 56, 441
FatI CATG 7 cut(s) 293, 311, 444, 473, 486, 627, 675
FokI GGATG 1 cut(s) 245
FriOI GRGCYC 3 cut(s) 177, 362, 600
FspBI CTAG 2 cut(s) 381, 515
GsaI CCCAGC 1 cut(s) 635
GsuI CTGGAG 1 cut(s) 530
HaeIII GGCC 3 cut(s) 385, 466, 674
HgaI GACGC 1 cut(s) 598
Hin1II CATG 7 cut(s) 297, 315, 448, 477, 490, 631, 679
HinfI GANTC 1 cut(s) 712
HphI GGTGA 3 cut(s) 357, 433, 707
Hpy188I TCNGA 2 cut(s) 347, 505
Hpy188III TCNNGA 5 cut(s) 23, 38, 278, 410, 622
HpyAV CCTTC 1 cut(s) 418
HpyCH4V TGCA 5 cut(s) 47, 293, 644, 679, 721
HpyF10VI GCNNNNNNNGC 1 cut(s) 582
HpyF3I CTNAG 2 cut(s) 50, 210
Hsp92II CATG 7 cut(s) 297, 315, 448, 477, 490, 631, 679
KpnI GGTACC 1 cut(s) 554
Kzo9I GATC 8 cut(s) 40, 100, 280, 319, 397, 438, 478, 529
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 5 cut(s) 180, 433, 448, 511, 603
LweI GCATC 2 cut(s) 223, 280
MaeI CTAG 2 cut(s) 381, 515
MaeIII GTNAC 1 cut(s) 713
MalI GATC 8 cut(s) 42, 102, 282, 321, 399, 440, 480, 531
MboI GATC 8 cut(s) 40, 100, 280, 319, 397, 438, 478, 529
MboII GAAGA 4 cut(s) 146, 182, 212, 721
MflI RGATCY 2 cut(s) 319, 529
MhlI GDGCHC 3 cut(s) 177, 362, 600
MluCI AATT 6 cut(s) 31, 131, 191, 258, 663, 734
MlyI GAGTC 1 cut(s) 721
MmeI TCCRAC 1 cut(s) 210
Mph1103I ATGCAT 1 cut(s) 295
MseI TTAA 3 cut(s) 195, 375, 581
MspR9I CCNGG 1 cut(s) 460
MvaI CCWGG 1 cut(s) 460
MwoI GCNNNNNNNGC 1 cut(s) 582
NdeII GATC 8 cut(s) 40, 100, 280, 319, 397, 438, 478, 529
NlaIII CATG 7 cut(s) 297, 315, 448, 477, 490, 631, 679
NlaIV GGNNCC 4 cut(s) 321, 435, 450, 552
NmuCI GTSAC 1 cut(s) 713
NsiI ATGCAT 1 cut(s) 295
NspI RCATGY 2 cut(s) 297, 631
PaeI GCATGC 1 cut(s) 631
PaqCI CACCTGC 1 cut(s) 726
PceI AGGCCT 2 cut(s) 385, 466
PciSI GCTCTTC 1 cut(s) 165
PleI GAGTC 1 cut(s) 720
PpsI GAGTC 1 cut(s) 720
PpuMI RGGWCCY 1 cut(s) 638
Psp124BI GAGCTC 3 cut(s) 177, 362, 600
Psp5II RGGWCCY 1 cut(s) 638
Psp6I CCWGG 1 cut(s) 458
PspFI CCCAGC 1 cut(s) 631
PspGI CCWGG 1 cut(s) 458
PspN4I GGNNCC 4 cut(s) 321, 435, 450, 552
PspPI GGNCC 1 cut(s) 638
PspPPI RGGWCCY 1 cut(s) 638
PstI CTGCAG 2 cut(s) 646, 723
PsuI RGATCY 2 cut(s) 319, 529
RsaI GTAC 1 cut(s) 552
RsaNI GTAC 1 cut(s) 551
SacI GAGCTC 3 cut(s) 177, 362, 600
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 3 cut(s) 195, 375, 581
Sau3AI GATC 8 cut(s) 40, 100, 280, 319, 397, 438, 478, 529
Sau96I GGNCC 1 cut(s) 638
SbfI CCTGCAGG 1 cut(s) 723
SchI GAGTC 1 cut(s) 721
ScrFI CCNGG 1 cut(s) 460
SdaI CCTGCAGG 1 cut(s) 723
SduI GDGCHC 3 cut(s) 177, 362, 600
SfaNI GCATC 2 cut(s) 223, 280
SfcI CTRYAG 2 cut(s) 642, 719
SinI GGWCC 1 cut(s) 638
SmlI CTYRAG 2 cut(s) 23, 622
SmoI CTYRAG 2 cut(s) 23, 622
SphI GCATGC 1 cut(s) 631
Sse8387I CCTGCAGG 1 cut(s) 723
Sse9I AATT 6 cut(s) 31, 131, 191, 258, 663, 734
SseBI AGGCCT 2 cut(s) 385, 466
SsiI CCGC 3 cut(s) 334, 498, 557
SspMI CTAG 2 cut(s) 381, 515
SstI GAGCTC 3 cut(s) 177, 362, 600
StuI AGGCCT 2 cut(s) 385, 466
StyD4I CCNGG 1 cut(s) 458
StyI CCWWGG 1 cut(s) 380
TaqI TCGA 2 cut(s) 288, 684
TasI AATT 6 cut(s) 31, 131, 191, 258, 663, 734
Tru1I TTAA 3 cut(s) 195, 375, 581
Tru9I TTAA 3 cut(s) 195, 375, 581
TscAI CASTG 2 cut(s) 103, 218
TseFI GTSAC 1 cut(s) 713
Tsp45I GTSAC 1 cut(s) 713
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 2 cut(s) 103, 218
VpaK11BI GGWCC 1 cut(s) 638
XapI RAATTY 2 cut(s) 31, 191
XceI RCATGY 2 cut(s) 297, 631
XmaJI CCTAGG 1 cut(s) 380
XspI CTAG 2 cut(s) 381, 515
Zsp2I ATGCAT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.