Rh2AG578600
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0016883
Physical Location & Seq
Forward (+)
80820772 .. 80827380
6609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG578600.1

Sequence Viewer

Length: 948 bp
ATGGATTCGACATCTAATACTCTAGAGCTGACCTTGAGTCTTAAGCCCTCCTTTGTTCCCAAACCCCTAAACCACTTACTGACTAACCTAGCTCAAATTGATAGTGCTTCCGCAAAATTGTCGGAGCTAGAAATTTACCTGAACCAGCAAGAAGAAGAGTTGCGTAGGGTTCAGGCTTTTGATAGAGATCTGCCTCATTGCATGCTTCTCTTGAAGGGTGCAATTGAGGTGATACAAGAGCAAATTTCAATTATCAAGAATGGTAGCGTAGAAGCCGATCACCATACCGTGCCATTGATTGGGAAGAGGCGAAATCAACCGGAAAAACCTAGCTTTTCGTCTTCCAAGCATGACTGGGTAATGGTCCGACCAAATAAATGGAGTCAAACAGAAAAAATGGAGGGCACTAGTACAAATCCGACCCCTGAATTCAACATTAACGTCGATGACTCCACAACGCCGATAGTAAATAATCATTTACCTAAATTGCCGACAGAGATATCAAGAAATGGACGGCGGATATGGACGCCGGAGCTCCATTTAAAATTTATGAAGGCATTGAATGACCTTGGAGGTGCTGAAGCAGCTACTCCCAAACTAGTTAGAGAGAGGATGCGGGTTAAGGGGCTTACAAACGATCAAGTGAAGAGTCATCTCCAGAAGTTCAGAATTTACAAAAAGGCGGGACTCCCGGTTCCACAAGCCGGAGCTGGCAGTAGTAGTGCAGAGTCTGCAGACAATCTTCATCAGCCAGCAATGGCATTACAAAAACAGTGGACTCTCCAATCCCAGGTTCCGTATACATATGACTTTTTTGGCACAGCCAGTACTTCAAGTGATCTGTATCTTCTAACTGCAGAAATTTTGCTCAAACTTGCTTTTATTGTTTCACTCTGCTTATTCAGATATGCAAGGGGTCTTTGTTCCAATTTCTTCATAGATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

315

Amino Acids

35.4

Weight (kDa)

8.64

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 12 - 82 8.3e-20 HHO5-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016883)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18211 FvH4_6g46323
malus_domestica MD17G1066200.v1.1
prunus_persica Prupe.3G248500_v2.0.a1
pyrus_communis pycom17g06640
rosa_laevigata RLG00000021490
rosa_multiflora Rmu_sc0000946.1_g000034
rosa_roxburghii Rroxscaffold_2G00086290
rosa_rugosa Rorug02G0510500
rosa_samantha Rh2AG578600 Rh2BG589900 Rh2CG560500 Rh2DG600100
rosa_wichuraiana Rw2G048040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 299
AccI GTMKAC 1 cut(s) 800
AciI CCGC 4 cut(s) 111, 517, 616, 683
AcsI RAATTY 6 cut(s) 132, 243, 428, 545, 669, 861
AcuI CTGAAG 1 cut(s) 600
AcyI GRCGYC 1 cut(s) 527
AfaI GTAC 2 cut(s) 412, 829
AfiI CCNNNNNNNGG 3 cut(s) 299, 704, 790
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 5 cut(s) 214, 249, 433, 562, 834
AhdI GACNNNNNGTC 1 cut(s) 36
AhlI ACTAGT 2 cut(s) 407, 598
AjnI CCWGG 1 cut(s) 789
AjuI GAANNNNNNNTTGG 2 cut(s) 777, 809
AloI GAACNNNNNNTCC 2 cut(s) 678, 710
AluBI AGCT 7 cut(s) 28, 92, 127, 333, 535, 587, 710
AluI AGCT 7 cut(s) 28, 92, 127, 333, 535, 587, 710
Alw21I GWGCWC 1 cut(s) 537
AlwNI CAGNNNCTG 1 cut(s) 731
ApeKI GCWGC 1 cut(s) 584
ApoI RAATTY 6 cut(s) 132, 243, 428, 545, 669, 861
AspS9I GGNCC 1 cut(s) 364
AsuC2I CCSGG 1 cut(s) 692
AsuHPI GGTGA 2 cut(s) 241, 272
AvaII GGWCC 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 407
BanII GRGCYC 1 cut(s) 537
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 1 cut(s) 596
BceAI ACGGC 1 cut(s) 530
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 1 cut(s) 791
BcnI CCSGG 1 cut(s) 692
BcuI ACTAGT 2 cut(s) 407, 598
BfaI CTAG 6 cut(s) 23, 89, 128, 330, 408, 599
BfmI CTRYAG 2 cut(s) 732, 855
BfrI CTTAAG 1 cut(s) 41
BglII AGATCT 1 cut(s) 187
BisI GCNGC 1 cut(s) 585
BlsI GCNGC 1 cut(s) 586
BmcAI AGTACT 1 cut(s) 829
Bme1390I CCNGG 2 cut(s) 692, 791
Bme18I GGWCC 1 cut(s) 364
BmeRI GACNNNNNGTC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 364
BmiI GGNNCC 2 cut(s) 696, 795
BmrFI CCNGG 2 cut(s) 692, 791
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 1 cut(s) 603
BmuI ACTGGG 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 641
BpuEI CTTGAG 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 692
BsaBI GATNNNNATC 2 cut(s) 186, 843
BsaHI GRCGYC 1 cut(s) 527
BsaJI CCNNGG 2 cut(s) 568, 789
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 3 cut(s) 299, 704, 790
Bse1I ACTGG 2 cut(s) 359, 825
Bse3DI GCAATG 2 cut(s) 196, 762
Bse8I GATNNNNATC 2 cut(s) 186, 843
BseBI CCWGG 1 cut(s) 791
BseDI CCNNGG 2 cut(s) 568, 789
BseGI GGATG 1 cut(s) 618
BseJI GATNNNNATC 2 cut(s) 186, 843
BseLI CCNNNNNNNGG 3 cut(s) 299, 704, 790
BseMI GCAATG 2 cut(s) 196, 762
BseNI ACTGG 2 cut(s) 359, 825
BseSI GKGCMC 1 cut(s) 407
BseXI GCAGC 1 cut(s) 596
BsgI GTGCAG 1 cut(s) 744
BsiHKAI GWGCWC 1 cut(s) 537
BsiSI CCGG 4 cut(s) 320, 530, 692, 705
BslFI GGGAC 1 cut(s) 699
BslI CCNNNNNNNGG 3 cut(s) 299, 704, 790
BsmFI GGGAC 1 cut(s) 699
Bsp1286I GDGCHC 2 cut(s) 407, 537
Bsp143I GATC 4 cut(s) 187, 277, 637, 838
BspACI CCGC 4 cut(s) 111, 517, 616, 683
BspLI GGNNCC 2 cut(s) 696, 795
BspMAI CTGCAG 2 cut(s) 736, 859
BspTI CTTAAG 1 cut(s) 41
BsrDI GCAATG 2 cut(s) 196, 762
BsrI ACTGG 2 cut(s) 359, 825
BssECI CCNNGG 2 cut(s) 568, 789
BssMI GATC 4 cut(s) 187, 277, 637, 838
BssNAI GTATAC 1 cut(s) 801
BssNI GRCGYC 1 cut(s) 527
BssT1I CCWWGG 1 cut(s) 568
Bst1107I GTATAC 1 cut(s) 801
Bst2UI CCWGG 1 cut(s) 791
Bst4CI ACNGT 2 cut(s) 289, 774
Bst6I CTCTTC 3 cut(s) 150, 299, 641
BstACI GRCGYC 1 cut(s) 527
BstAFI CTTAAG 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 731
BstC8I GCNNGC 3 cut(s) 203, 712, 753
BstF5I GGATG 1 cut(s) 618
BstKTI GATC 4 cut(s) 190, 280, 640, 841
BstMBI GATC 4 cut(s) 187, 277, 637, 838
BstMWI GCNNNNNNNGC 2 cut(s) 584, 731
BstNI CCWGG 1 cut(s) 791
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 690, 789
BstSFI CTRYAG 2 cut(s) 732, 855
BstSLI GKGCMC 1 cut(s) 407
BstV1I GCAGC 1 cut(s) 596
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 378
BstYI RGATCY 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 801
BtsCI GGATG 1 cut(s) 618
BtsIMutI CAGTG 1 cut(s) 779
Cac8I GCNNGC 3 cut(s) 203, 712, 753
CaiI CAGNNNCTG 1 cut(s) 731
Cfr13I GGNCC 1 cut(s) 364
CseI GACGC 1 cut(s) 535
Csp6I GTAC 2 cut(s) 411, 828
CspCI CAANNNNNGTGG 2 cut(s) 755, 790
CviAII CATG 2 cut(s) 202, 350
CviQI GTAC 2 cut(s) 411, 828
DpnI GATC 4 cut(s) 189, 279, 639, 840
DpnII GATC 4 cut(s) 187, 277, 637, 838
DraI TTTAAA 1 cut(s) 543
DriI GACNNNNNGTC 1 cut(s) 36
Eam1104I CTCTTC 3 cut(s) 150, 299, 641
Eam1105I GACNNNNNGTC 1 cut(s) 36
EarI CTCTTC 3 cut(s) 150, 299, 641
EciI GGCGGA 1 cut(s) 532
Ecl136II GAGCTC 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 537
Eco32I GATATC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 364
Eco53kI GAGCTC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 600
EcoICRI GAGCTC 1 cut(s) 535
EcoRI GAATTC 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 789
EcoRV GATATC 1 cut(s) 501
EcoT14I CCWWGG 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 2 cut(s) 205, 353
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FaqI GGGAC 1 cut(s) 699
FatI CATG 2 cut(s) 201, 349
FauI CCCGC 2 cut(s) 609, 676
FauNDI CATATG 1 cut(s) 805
FblI GTMKAC 1 cut(s) 800
Fnu4HI GCNGC 1 cut(s) 585
FokI GGATG 1 cut(s) 625
FriOI GRGCYC 1 cut(s) 537
Fsp4HI GCNGC 1 cut(s) 585
FspBI CTAG 6 cut(s) 23, 89, 128, 330, 408, 599
GluI GCNGC 1 cut(s) 585
GsuI CTGGAG 1 cut(s) 641
HapII CCGG 4 cut(s) 320, 530, 692, 705
HgaI GACGC 1 cut(s) 535
Hin1I GRCGYC 1 cut(s) 527
Hin1II CATG 2 cut(s) 205, 353
HinfI GANTC 9 cut(s) 5, 37, 382, 449, 649, 687, 728, 778, 941
HpaII CCGG 4 cut(s) 320, 530, 692, 705
HphI GGTGA 2 cut(s) 241, 272
Hpy166II GTNNAC 2 cut(s) 777, 801
Hpy188I TCNGA 5 cut(s) 124, 368, 420, 668, 905
Hpy188III TCNNGA 5 cut(s) 23, 211, 256, 504, 658
Hpy8I GTNNAC 2 cut(s) 777, 801
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 2 cut(s) 208, 547
HpyCH4III ACNGT 2 cut(s) 289, 774
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 6 cut(s) 201, 221, 725, 734, 857, 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 584, 731
HpySE526I ACGT 1 cut(s) 441
Hsp92I GRCGYC 1 cut(s) 527
Hsp92II CATG 2 cut(s) 205, 353
Kzo9I GATC 4 cut(s) 187, 277, 637, 838
LmnI GCTCC 4 cut(s) 124, 532, 540, 707
Lsp1109I GCAGC 1 cut(s) 596
LweI GCATC 1 cut(s) 603
MaeI CTAG 6 cut(s) 23, 89, 128, 330, 408, 599
MaeII ACGT 1 cut(s) 441
MalI GATC 4 cut(s) 189, 279, 639, 840
MboI GATC 4 cut(s) 187, 277, 637, 838
MboII GAAGA 8 cut(s) 164, 167, 316, 333, 658, 734, 839, 925
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 2 cut(s) 407, 537
MlyI GAGTC 7 cut(s) 46, 391, 443, 658, 681, 737, 772
MmeI TCCRAC 3 cut(s) 102, 391, 443
MnlI CCTC 7 cut(s) 58, 204, 220, 300, 394, 566, 603
MseI TTAA 4 cut(s) 42, 438, 542, 621
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 4 cut(s) 320, 530, 692, 705
MspR9I CCNGG 2 cut(s) 692, 791
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 791
MwoI GCNNNNNNNGC 2 cut(s) 584, 731
NciI CCSGG 1 cut(s) 692
NdeI CATATG 1 cut(s) 805
NdeII GATC 4 cut(s) 187, 277, 637, 838
NlaIII CATG 2 cut(s) 205, 353
NlaIV GGNNCC 2 cut(s) 696, 795
NspI RCATGY 1 cut(s) 205
PaeI GCATGC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 5, 941
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 1 cut(s) 586
PleI GAGTC 7 cut(s) 45, 390, 443, 657, 681, 736, 772
PpsI GAGTC 7 cut(s) 45, 390, 443, 657, 681, 736, 772
Psp124BI GAGCTC 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 789
PspGI CCWGG 1 cut(s) 789
PspN4I GGNNCC 2 cut(s) 696, 795
PspPI GGNCC 1 cut(s) 364
PstI CTGCAG 2 cut(s) 736, 859
PstNI CAGNNNCTG 1 cut(s) 731
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 2 cut(s) 412, 829
RsaNI GTAC 2 cut(s) 411, 828
SacI GAGCTC 1 cut(s) 537
SaqAI TTAA 4 cut(s) 42, 438, 542, 621
SatI GCNGC 1 cut(s) 585
Sau3AI GATC 4 cut(s) 187, 277, 637, 838
Sau96I GGNCC 1 cut(s) 364
ScaI AGTACT 1 cut(s) 829
SchI GAGTC 7 cut(s) 46, 391, 443, 658, 681, 737, 772
ScrFI CCNGG 2 cut(s) 692, 791
SduI GDGCHC 2 cut(s) 407, 537
SfaNI GCATC 1 cut(s) 603
SfcI CTRYAG 2 cut(s) 732, 855
SinI GGWCC 1 cut(s) 364
SmlI CTYRAG 2 cut(s) 34, 41
SmoI CTYRAG 2 cut(s) 34, 41
SpeI ACTAGT 2 cut(s) 407, 598
SphI GCATGC 1 cut(s) 205
SsiI CCGC 4 cut(s) 111, 517, 616, 683
SspMI CTAG 6 cut(s) 23, 89, 128, 330, 408, 599
SstI GAGCTC 1 cut(s) 537
StyD4I CCNGG 2 cut(s) 690, 789
StyI CCWWGG 1 cut(s) 568
TaaI ACNGT 2 cut(s) 289, 774
TaiI ACGT 1 cut(s) 444
TaqI TCGA 2 cut(s) 8, 444
TatI WGTACW 2 cut(s) 410, 827
TfiI GAWTC 2 cut(s) 5, 941
Tru1I TTAA 4 cut(s) 42, 438, 542, 621
Tru9I TTAA 4 cut(s) 42, 438, 542, 621
TscAI CASTG 1 cut(s) 779
TseI GCWGC 1 cut(s) 584
TspDTI ATGAA 4 cut(s) 566, 734, 925, 933
TspGWI ACGGA 1 cut(s) 786
TspRI CASTG 1 cut(s) 779
Van91I CCANNNNNTGG 1 cut(s) 299
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 364
XapI RAATTY 6 cut(s) 132, 243, 428, 545, 669, 861
XbaI TCTAGA 1 cut(s) 22
XceI RCATGY 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 800
XspI CTAG 6 cut(s) 23, 89, 128, 330, 408, 599
ZrmI AGTACT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.