Rroxscaffold_2G00086290
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016883
Physical Location & Seq
Reverse (-)
8512124 .. 8514672
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086290.1

Sequence Viewer

Length: 891 bp
ATGGATTCAACATCTAATACTCTAGAGCTGACCTTGAGTCTTCAGCCCTCCTTTGTTCCCAAACCCCTAAACCACTTACTGACTAACCTACCTCAAATTGATAGTGCTGCCGCAAAATTGTCGGAGCTAGAAATTTACCTGAACCAGCATGAAGAAGAGTTGCGTAGGGTTCAGGCTTTTGATAGAGATCTGCCTCATTGCATGCTTCTCTTGAAGGGTGCAATTGAGGTGATACAAGAGCAAATTTCAATTATCAAGAATGGTAGCGTAGAAGCCGATCACCATACCGTGCCACTGATTGGGAAGAGGCGAAATCAACCGGAAAAACCTAGCTTTTCGTCTTCCAAGCATGACTGGGTAATGGTCCGACCAAATAAATGGAGTCAAACAGAAAAAATGGGCACTAGTACAAATCCGACCCTTGAATTCAACATTAACGTCGATGACTCCACAACGCCGATAGTAAAAAATCATTTACCTCCATTGCCGATAGAGATATCGAGAAACAGACGGCGGATATGGACGCCGGAGCTCCATTTAAAATTTATGAAGGCACTGAATGACCTCGGAGGTGCTGAAGCAGCTACTCCCAAACTAGTTAGAGAGAGGATGCGGGTTAAGGGGCTTACAAACGATCAAGTGAAGAGTCATCTCCAAAAGTTCAGAATTTACAAAAAGGCGGGACTCCCGGTTCCGCAAGCCGGAGCTGGCAGTAGTAGTGCAGAGTCTGCAGACAATCTTCATCAGCCAGCAATGGCATTACAAAAACAGTGGACTCTCCAATCCCAGGTTCCGTATACATATGACTTTTTTGGCACAGCCAGTACTTCAAGTGGTCAGTACTCGAACTGGCCGCAGCATCAGGGAGGTGACCAGGGAGCGCAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

296

Amino Acids

33.23

Weight (kDa)

8.85

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 12 - 82 6.9e-20 HHO5-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016883)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18211 FvH4_6g46323
malus_domestica MD17G1066200.v1.1
prunus_persica Prupe.3G248500_v2.0.a1
pyrus_communis pycom17g06640
rosa_laevigata RLG00000021490
rosa_multiflora Rmu_sc0000946.1_g000034
rosa_roxburghii Rroxscaffold_2G00086290
rosa_rugosa Rorug02G0510500
rosa_samantha Rh2AG578600 Rh2BG589900 Rh2CG560500 Rh2DG600100
rosa_wichuraiana Rw2G048040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 299
AccI GTMKAC 1 cut(s) 797
AciI CCGC 6 cut(s) 111, 514, 613, 680, 695, 854
AcoI YGGCCR 1 cut(s) 851
AcsI RAATTY 5 cut(s) 132, 243, 425, 542, 666
AcuI CTGAAG 2 cut(s) 26, 597
AcyI GRCGYC 1 cut(s) 524
AfaI GTAC 3 cut(s) 409, 826, 842
AfiI CCNNNNNNNGG 3 cut(s) 299, 701, 787
AgsI TTSAA 6 cut(s) 9, 214, 249, 425, 430, 831
AhdI GACNNNNNGTC 1 cut(s) 36
AhlI ACTAGT 2 cut(s) 404, 595
AjnI CCWGG 2 cut(s) 786, 873
AjuI GAANNNNNNNTTGG 2 cut(s) 774, 806
AloI GAACNNNNNNTCC 2 cut(s) 675, 707
AluBI AGCT 6 cut(s) 28, 127, 333, 532, 584, 707
AluI AGCT 6 cut(s) 28, 127, 333, 532, 584, 707
Alw21I GWGCWC 1 cut(s) 534
AlwNI CAGNNNCTG 1 cut(s) 728
AoxI GGCC 1 cut(s) 851
ApeKI GCWGC 3 cut(s) 107, 581, 856
ApoI RAATTY 5 cut(s) 132, 243, 425, 542, 666
AspLEI GCGC 1 cut(s) 883
AspS9I GGNCC 1 cut(s) 364
AsuC2I CCSGG 1 cut(s) 689
AsuHPI GGTGA 3 cut(s) 241, 272, 881
AvaII GGWCC 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 534
BbsI GAAGAC 2 cut(s) 32, 333
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 3 cut(s) 94, 593, 868
BceAI ACGGC 1 cut(s) 527
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 2 cut(s) 788, 875
BcnI CCSGG 1 cut(s) 689
BcuI ACTAGT 2 cut(s) 404, 595
BfaI CTAG 6 cut(s) 23, 128, 330, 405, 596, 889
BfmI CTRYAG 1 cut(s) 729
BglII AGATCT 1 cut(s) 187
BisI GCNGC 5 cut(s) 108, 111, 582, 854, 857
BlsI GCNGC 5 cut(s) 109, 112, 583, 855, 858
BmcAI AGTACT 2 cut(s) 826, 842
Bme1390I CCNGG 3 cut(s) 689, 788, 875
Bme18I GGWCC 1 cut(s) 364
BmeRI GACNNNNNGTC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 364
BmiI GGNNCC 2 cut(s) 693, 792
BmrFI CCNGG 3 cut(s) 689, 788, 875
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 2 cut(s) 600, 868
BmuI ACTGGG 1 cut(s) 364
BpiI GAAGAC 2 cut(s) 32, 333
BpuEI CTTGAG 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 689
BsaBI GATNNNNATC 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 524
BsaJI CCNNGG 3 cut(s) 565, 786, 874
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 3 cut(s) 299, 701, 787
Bse1I ACTGG 3 cut(s) 359, 822, 854
Bse3DI GCAATG 3 cut(s) 196, 482, 759
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 2 cut(s) 788, 875
BseDI CCNNGG 3 cut(s) 565, 786, 874
BseGI GGATG 1 cut(s) 615
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 3 cut(s) 299, 701, 787
BseMI GCAATG 3 cut(s) 196, 482, 759
BseNI ACTGG 3 cut(s) 359, 822, 854
BseSI GKGCMC 1 cut(s) 404
BseXI GCAGC 3 cut(s) 94, 593, 868
BsgI GTGCAG 1 cut(s) 741
BshFI GGCC 1 cut(s) 853
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 4 cut(s) 320, 527, 689, 702
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 3 cut(s) 299, 701, 787
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 1 cut(s) 853
Bsp1286I GDGCHC 2 cut(s) 404, 534
Bsp143I GATC 3 cut(s) 187, 277, 634
BspACI CCGC 6 cut(s) 111, 514, 613, 680, 695, 854
BspANI GGCC 1 cut(s) 853
BspLI GGNNCC 2 cut(s) 693, 792
BspMAI CTGCAG 1 cut(s) 733
BsrDI GCAATG 3 cut(s) 196, 482, 759
BsrI ACTGG 3 cut(s) 359, 822, 854
BssECI CCNNGG 3 cut(s) 565, 786, 874
BssMI GATC 3 cut(s) 187, 277, 634
BssNAI GTATAC 1 cut(s) 798
BssNI GRCGYC 1 cut(s) 524
Bst1107I GTATAC 1 cut(s) 798
Bst2UI CCWGG 2 cut(s) 788, 875
Bst4CI ACNGT 2 cut(s) 289, 771
Bst6I CTCTTC 3 cut(s) 150, 299, 638
BstACI GRCGYC 1 cut(s) 524
BstAPI GCANNNNNTGC 1 cut(s) 728
BstC8I GCNNGC 4 cut(s) 203, 699, 709, 750
BstEII GGTNACC 1 cut(s) 869
BstF5I GGATG 1 cut(s) 615
BstHHI GCGC 1 cut(s) 883
BstKTI GATC 3 cut(s) 190, 280, 637
BstMBI GATC 3 cut(s) 187, 277, 634
BstMWI GCNNNNNNNGC 2 cut(s) 581, 728
BstNI CCWGG 2 cut(s) 788, 875
BstNSI RCATGY 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 869
BstSCI CCNGG 3 cut(s) 687, 786, 873
BstSFI CTRYAG 1 cut(s) 729
BstSLI GKGCMC 1 cut(s) 404
BstV1I GCAGC 3 cut(s) 94, 593, 868
BstV2I GAAGAC 2 cut(s) 32, 333
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 378
BstYI RGATCY 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 798
BsuRI GGCC 1 cut(s) 853
BtsCI GGATG 1 cut(s) 615
BtsIMutI CAGTG 3 cut(s) 293, 554, 776
Cac8I GCNNGC 4 cut(s) 203, 699, 709, 750
CaiI CAGNNNCTG 1 cut(s) 728
CfoI GCGC 1 cut(s) 883
Cfr13I GGNCC 1 cut(s) 364
CseI GACGC 1 cut(s) 532
Csp6I GTAC 3 cut(s) 408, 825, 841
CspCI CAANNNNNGTGG 2 cut(s) 752, 787
CviAII CATG 3 cut(s) 149, 202, 350
CviQI GTAC 3 cut(s) 408, 825, 841
DpnI GATC 3 cut(s) 189, 279, 636
DpnII GATC 3 cut(s) 187, 277, 634
DraI TTTAAA 1 cut(s) 540
DriI GACNNNNNGTC 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 851
Eam1104I CTCTTC 3 cut(s) 150, 299, 638
Eam1105I GACNNNNNGTC 1 cut(s) 36
EarI CTCTTC 3 cut(s) 150, 299, 638
EciI GGCGGA 1 cut(s) 529
Ecl136II GAGCTC 1 cut(s) 532
Eco24I GRGCYC 1 cut(s) 534
Eco32I GATATC 1 cut(s) 498
Eco47I GGWCC 1 cut(s) 364
Eco53kI GAGCTC 1 cut(s) 532
Eco57I CTGAAG 2 cut(s) 26, 597
Eco91I GGTNACC 1 cut(s) 869
EcoICRI GAGCTC 1 cut(s) 532
EcoO65I GGTNACC 1 cut(s) 869
EcoRI GAATTC 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 786, 873
EcoRV GATATC 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 534
FaeI CATG 3 cut(s) 152, 205, 353
FaiI YATR 9 cut(s) 150, 203, 285, 351, 520, 548, 798, 802, 804
FaqI GGGAC 1 cut(s) 696
FatI CATG 3 cut(s) 148, 201, 349
FauI CCCGC 2 cut(s) 606, 673
FauNDI CATATG 1 cut(s) 802
FblI GTMKAC 1 cut(s) 797
Fnu4HI GCNGC 5 cut(s) 108, 111, 582, 854, 857
FokI GGATG 1 cut(s) 622
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 5 cut(s) 108, 111, 582, 854, 857
FspBI CTAG 6 cut(s) 23, 128, 330, 405, 596, 889
GlaI GCGC 1 cut(s) 882
GluI GCNGC 5 cut(s) 108, 111, 582, 854, 857
HaeIII GGCC 1 cut(s) 853
HapII CCGG 4 cut(s) 320, 527, 689, 702
HgaI GACGC 1 cut(s) 532
HhaI GCGC 1 cut(s) 883
Hin1I GRCGYC 1 cut(s) 524
Hin1II CATG 3 cut(s) 152, 205, 353
Hin6I GCGC 1 cut(s) 881
HinP1I GCGC 1 cut(s) 881
HinfI GANTC 8 cut(s) 5, 37, 382, 446, 646, 684, 725, 775
HpaII CCGG 4 cut(s) 320, 527, 689, 702
HphI GGTGA 3 cut(s) 241, 272, 881
Hpy166II GTNNAC 2 cut(s) 774, 798
Hpy188I TCNGA 5 cut(s) 124, 368, 417, 569, 665
Hpy188III TCNNGA 4 cut(s) 23, 211, 256, 501
Hpy8I GTNNAC 2 cut(s) 774, 798
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 2 cut(s) 208, 544
HpyCH4III ACNGT 2 cut(s) 289, 771
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 4 cut(s) 201, 221, 722, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 728
HpySE526I ACGT 1 cut(s) 438
Hsp92I GRCGYC 1 cut(s) 524
Hsp92II CATG 3 cut(s) 152, 205, 353
HspAI GCGC 1 cut(s) 881
Kzo9I GATC 3 cut(s) 187, 277, 634
LmnI GCTCC 5 cut(s) 124, 529, 537, 704, 878
Lsp1109I GCAGC 3 cut(s) 94, 593, 868
LweI GCATC 2 cut(s) 600, 868
MaeI CTAG 6 cut(s) 23, 128, 330, 405, 596, 889
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 1 cut(s) 869
MalI GATC 3 cut(s) 189, 279, 636
MboI GATC 3 cut(s) 187, 277, 634
MboII GAAGA 7 cut(s) 32, 164, 167, 316, 333, 655, 731
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 2 cut(s) 404, 534
MluCI AATT 9 cut(s) 96, 116, 132, 222, 243, 249, 425, 542, 666
MlyI GAGTC 7 cut(s) 46, 391, 440, 655, 678, 734, 769
MmeI TCCRAC 3 cut(s) 102, 391, 440
MseI TTAA 3 cut(s) 435, 539, 618
MspI CCGG 4 cut(s) 320, 527, 689, 702
MspR9I CCNGG 3 cut(s) 689, 788, 875
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 2 cut(s) 788, 875
MwoI GCNNNNNNNGC 2 cut(s) 581, 728
NciI CCSGG 1 cut(s) 689
NdeI CATATG 1 cut(s) 802
NdeII GATC 3 cut(s) 187, 277, 634
NlaIII CATG 3 cut(s) 152, 205, 353
NlaIV GGNNCC 2 cut(s) 693, 792
NmuCI GTSAC 1 cut(s) 869
NspI RCATGY 1 cut(s) 205
PaeI GCATGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 5
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 5 cut(s) 109, 112, 583, 855, 858
PleI GAGTC 7 cut(s) 45, 390, 440, 654, 678, 733, 769
PpsI GAGTC 7 cut(s) 45, 390, 440, 654, 678, 733, 769
Psp124BI GAGCTC 1 cut(s) 534
Psp6I CCWGG 2 cut(s) 786, 873
PspEI GGTNACC 1 cut(s) 869
PspGI CCWGG 2 cut(s) 786, 873
PspN4I GGNNCC 2 cut(s) 693, 792
PspPI GGNCC 1 cut(s) 364
PstI CTGCAG 1 cut(s) 733
PstNI CAGNNNCTG 1 cut(s) 728
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 3 cut(s) 409, 826, 842
RsaNI GTAC 3 cut(s) 408, 825, 841
SacI GAGCTC 1 cut(s) 534
SaqAI TTAA 3 cut(s) 435, 539, 618
SatI GCNGC 5 cut(s) 108, 111, 582, 854, 857
Sau3AI GATC 3 cut(s) 187, 277, 634
Sau96I GGNCC 1 cut(s) 364
ScaI AGTACT 2 cut(s) 826, 842
SchI GAGTC 7 cut(s) 46, 391, 440, 655, 678, 734, 769
ScrFI CCNGG 3 cut(s) 689, 788, 875
SduI GDGCHC 2 cut(s) 404, 534
SfaNI GCATC 2 cut(s) 600, 868
SfcI CTRYAG 1 cut(s) 729
SinI GGWCC 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
SpeI ACTAGT 2 cut(s) 404, 595
SphI GCATGC 1 cut(s) 205
Sse9I AATT 9 cut(s) 96, 116, 132, 222, 243, 249, 425, 542, 666
SsiI CCGC 6 cut(s) 111, 514, 613, 680, 695, 854
SspMI CTAG 6 cut(s) 23, 128, 330, 405, 596, 889
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 3 cut(s) 687, 786, 873
TaaI ACNGT 2 cut(s) 289, 771
TaiI ACGT 1 cut(s) 441
TaqI TCGA 3 cut(s) 441, 500, 845
TasI AATT 9 cut(s) 96, 116, 132, 222, 243, 249, 425, 542, 666
TatI WGTACW 3 cut(s) 407, 824, 840
TauI GCSGC 2 cut(s) 113, 856
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 3 cut(s) 435, 539, 618
Tru9I TTAA 3 cut(s) 435, 539, 618
TscAI CASTG 3 cut(s) 300, 561, 776
TseFI GTSAC 1 cut(s) 869
TseI GCWGC 3 cut(s) 107, 581, 856
Tsp45I GTSAC 1 cut(s) 869
TspDTI ATGAA 3 cut(s) 165, 563, 731
TspGWI ACGGA 1 cut(s) 783
TspRI CASTG 3 cut(s) 300, 561, 776
Van91I CCANNNNNTGG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 364
XapI RAATTY 5 cut(s) 132, 243, 425, 542, 666
XbaI TCTAGA 1 cut(s) 22
XceI RCATGY 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 797
XspI CTAG 6 cut(s) 23, 128, 330, 405, 596, 889
ZrmI AGTACT 2 cut(s) 826, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.