MD17G1066200.v1.1
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0016883
Physical Location & Seq
Reverse (-)
5342055 .. 5342767
713 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1066200.v1.1.491

Sequence Viewer

Length: 363 bp
ATGACTTCCCAATGTTCCCAATCATCTAGTCGGATGGGAATGATGGTGAACAAAGAGCCGACAAGCCCTACGCCGTTCCCATGCGATTTGAACATGGCGGCCGACGATTTTGAGCTAGAGTCAAAACCACAGGCACAACCGGAGTCCCAGCCACAGCCACAGCTTCCACAGCCACTACCGCTGCCAAACTTGAAGAACAAAAGGAGGAGCTGGTCGCCGGAGCTCCACGCAAGGTTTCTGAAGGCCATGAGTTTACTTGGAGGTCCTCAAGAGGCTACTCCAAAGCAGATACAAGCTGTCATGCAGGTCGATGGGCTAACCCACGACCAAGTCAAGAGTCATCTGCAGAAATACAAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

121

Amino Acids

13.42

Weight (kDa)

8.64

Isoelectric Point (pI)

80.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 68 - 119 6.2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016883)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18211 FvH4_6g46323
malus_domestica MD17G1066200.v1.1
prunus_persica Prupe.3G248500_v2.0.a1
pyrus_communis pycom17g06640
rosa_laevigata RLG00000021490
rosa_multiflora Rmu_sc0000946.1_g000034
rosa_roxburghii Rroxscaffold_2G00086290
rosa_rugosa Rorug02G0510500
rosa_samantha Rh2AG578600 Rh2BG589900 Rh2CG560500 Rh2DG600100
rosa_wichuraiana Rw2G048040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AciI CCGC 2 cut(s) 98, 179
AcoI YGGCCR 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 260
AgsI TTSAA 2 cut(s) 91, 193
AluBI AGCT 5 cut(s) 115, 163, 210, 223, 296
AluI AGCT 5 cut(s) 115, 163, 210, 223, 296
Alw21I GWGCWC 1 cut(s) 225
AoxI GGCC 2 cut(s) 99, 243
ApeKI GCWGC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 168
BccI CCATC 3 cut(s) 28, 37, 305
BceAI ACGGC 1 cut(s) 58
BfaI CTAG 2 cut(s) 27, 116
BfmI CTRYAG 1 cut(s) 344
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 2 cut(s) 99, 182
BlsI GCNGC 2 cut(s) 100, 183
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 139
BseGI GGATG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 220
BseX3I CGGCCG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 168
BseYI CCCAGC 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 2 cut(s) 101, 245
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 2 cut(s) 140, 218
BslFI GGGAC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 2 cut(s) 101, 245
Bsp1286I GDGCHC 1 cut(s) 225
BspACI CCGC 2 cut(s) 98, 179
BspANI GGCC 2 cut(s) 101, 245
BspMAI CTGCAG 1 cut(s) 348
BspMI ACCTGC 1 cut(s) 295
BstF5I GGATG 1 cut(s) 39
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 169, 178
BstSFI CTRYAG 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 168
BstZI CGGCCG 1 cut(s) 99
BsuRI GGCC 2 cut(s) 101, 245
BtsCI GGATG 1 cut(s) 39
BveI ACCTGC 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 263
CviAII CATG 4 cut(s) 81, 94, 247, 301
EaeI YGGCCR 1 cut(s) 99
EagI CGGCCG 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 223
EclXI CGGCCG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 263
Eco52I CGGCCG 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 225
FaeI CATG 4 cut(s) 84, 97, 250, 304
FaiI YATR 5 cut(s) 82, 95, 248, 302, 361
FaqI GGGAC 1 cut(s) 130
FatI CATG 4 cut(s) 80, 93, 246, 300
Fnu4HI GCNGC 2 cut(s) 99, 182
FokI GGATG 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 2 cut(s) 99, 182
FspBI CTAG 2 cut(s) 27, 116
GluI GCNGC 2 cut(s) 99, 182
GsaI CCCAGC 1 cut(s) 151
HaeIII GGCC 2 cut(s) 101, 245
HapII CCGG 2 cut(s) 140, 218
Hin1II CATG 4 cut(s) 84, 97, 250, 304
HinfI GANTC 3 cut(s) 119, 143, 337
HpaII CCGG 2 cut(s) 140, 218
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 49, 254
Hpy188I TCNGA 2 cut(s) 33, 240
Hpy188III TCNNGA 2 cut(s) 269, 334
Hpy8I GTNNAC 2 cut(s) 49, 254
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 235
HpyCH4V TGCA 2 cut(s) 304, 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 178
Hsp92II CATG 4 cut(s) 84, 97, 250, 304
LmnI GCTCC 3 cut(s) 207, 220, 228
LpnPI CCDG 6 cut(s) 116, 153, 161, 196, 231, 290
Lsp1109I GCAGC 1 cut(s) 168
MaeI CTAG 2 cut(s) 27, 116
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 225
MlyI GAGTC 3 cut(s) 128, 152, 346
MmeI TCCRAC 1 cut(s) 11
MnlI CCTC 4 cut(s) 198, 254, 265, 276
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 2 cut(s) 140, 218
MwoI GCNNNNNNNGC 2 cut(s) 169, 178
NlaIII CATG 4 cut(s) 84, 97, 250, 304
PflFI GACNNNGTC 1 cut(s) 329
PkrI GCNGC 2 cut(s) 100, 183
PleI GAGTC 3 cut(s) 127, 151, 345
PpsI GAGTC 3 cut(s) 127, 151, 345
PpuMI RGGWCCY 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 263
PspPPI RGGWCCY 1 cut(s) 263
PstI CTGCAG 1 cut(s) 348
PsyI GACNNNGTC 1 cut(s) 329
SacI GAGCTC 1 cut(s) 225
SatI GCNGC 2 cut(s) 99, 182
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 3 cut(s) 128, 152, 346
SduI GDGCHC 1 cut(s) 225
SetI ASST 8 cut(s) 117, 165, 212, 225, 236, 265, 298, 309
SfcI CTRYAG 1 cut(s) 344
SinI GGWCC 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
SsiI CCGC 2 cut(s) 98, 179
SspMI CTAG 2 cut(s) 27, 116
SstI GAGCTC 1 cut(s) 225
TaqI TCGA 1 cut(s) 309
TauI GCSGC 1 cut(s) 101
TseI GCWGC 1 cut(s) 181
Tth111I GACNNNGTC 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 263
XspI CTAG 2 cut(s) 27, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.