Rh2CG560500
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0016883
Physical Location & Seq
Forward (+)
73871391 .. 73874094
2704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG560500.1

Sequence Viewer

Length: 894 bp
ATGGATTCAACATCTAATACTCTAGAGCTGACCTTGAGTCTTAAGCCCTCCTTTGATCCCAAACCCCTAAACCACTTACTGACTAACCTAGCTCAAATTGATAGTGCTTCCGCAAAATTGTCGGAGCTAGAAATTTACCTGAACCAGCATGAAGAAGAGTTGCGTAGGGTTCAGGCTTTTGATAGAGATCTGCCTCATTGCATGCTTCTCTTGAAGGGTGCAATTGAGGTGATACAAGAGCAAATTTCAATTATCAAGAATGGTAGCGTAGAAGCCGATCACCATAACGTGCCATTGATTGGGAAGAGGCGAAATCAACCGGAAAAACCTAGCTTTTCGTCTTCCAAGCATGACTGGGTAATGGTCCGACGAAATAAATGGAGTCAAACAGAAAAAATGGAGGGCACGAGTACAAATCCGACCCCTGAATTCAACATTAACGTCGATGACTCCACAACGCCGATAGTAAATAATCATTTACCTAAATTGCCGACAGAGATATCAAGAAATGGACGGCGGATATGGACGCCGGAGCTCCATTTAAAATTTATGAAGGCATTGAATGACCTTGGAGGTGCTGAAGCAGCTACTCCCAAACTAGTTAGAGAGAGGATGCGGGTTAAGGGGCTTACAAACGATCAAGTGAAGAGTCATCTCCAGAAGTTCAGAATTTACAAAAAGGCGGGACTCCCGGTTCCGCAAGCCGGAGCTGGCAGTAGTAGTGCAGAGTCTGCAGACAATCTTCATCAGCCAGCAATGGCATTACAAAAACAGTGGACTCTCCAATCCCAGGTTCCGTATACATATGACTTTTTTGGCACAGCCAGTACTTCAAGTTGTCAGTACTCGAACTGGCGGCAGCATCAGGGAGATGACCAGGGAGCGCAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

297

Amino Acids

33.49

Weight (kDa)

8.43

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 12 - 82 3.7e-19 HHO5-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016883)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18211 FvH4_6g46323
malus_domestica MD17G1066200.v1.1
prunus_persica Prupe.3G248500_v2.0.a1
pyrus_communis pycom17g06640
rosa_laevigata RLG00000021490
rosa_multiflora Rmu_sc0000946.1_g000034
rosa_roxburghii Rroxscaffold_2G00086290
rosa_rugosa Rorug02G0510500
rosa_samantha Rh2AG578600 Rh2BG589900 Rh2CG560500 Rh2DG600100
rosa_wichuraiana Rw2G048040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 299
AccI GTMKAC 1 cut(s) 800
AciI CCGC 6 cut(s) 111, 517, 616, 683, 698, 856
AclWI GGATC 1 cut(s) 50
AcsI RAATTY 5 cut(s) 132, 243, 428, 545, 669
AcuI CTGAAG 1 cut(s) 600
AcyI GRCGYC 1 cut(s) 527
AfaI GTAC 3 cut(s) 412, 829, 845
AfiI CCNNNNNNNGG 3 cut(s) 299, 704, 790
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 6 cut(s) 9, 214, 249, 433, 562, 834
AhdI GACNNNNNGTC 1 cut(s) 36
AhlI ACTAGT 1 cut(s) 598
AjnI CCWGG 2 cut(s) 789, 876
AjuI GAANNNNNNNTTGG 2 cut(s) 777, 809
AloI GAACNNNNNNTCC 2 cut(s) 678, 710
AluBI AGCT 7 cut(s) 28, 92, 127, 333, 535, 587, 710
AluI AGCT 7 cut(s) 28, 92, 127, 333, 535, 587, 710
Alw21I GWGCWC 1 cut(s) 537
AlwI GGATC 1 cut(s) 50
AlwNI CAGNNNCTG 1 cut(s) 731
ApeKI GCWGC 2 cut(s) 584, 859
ApoI RAATTY 5 cut(s) 132, 243, 428, 545, 669
AspLEI GCGC 1 cut(s) 886
AspS9I GGNCC 1 cut(s) 364
AsuC2I CCSGG 1 cut(s) 692
AsuHPI GGTGA 2 cut(s) 241, 272
AvaII GGWCC 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 407
BanII GRGCYC 1 cut(s) 537
BauI CACGAG 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 2 cut(s) 596, 871
BceAI ACGGC 1 cut(s) 530
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 2 cut(s) 791, 878
BcnI CCSGG 1 cut(s) 692
BcuI ACTAGT 1 cut(s) 598
BfaI CTAG 6 cut(s) 23, 89, 128, 330, 599, 892
BfmI CTRYAG 1 cut(s) 732
BfrI CTTAAG 1 cut(s) 41
BglII AGATCT 1 cut(s) 187
BisI GCNGC 3 cut(s) 585, 857, 860
BlsI GCNGC 3 cut(s) 586, 858, 861
BmcAI AGTACT 2 cut(s) 829, 845
Bme1390I CCNGG 3 cut(s) 692, 791, 878
Bme18I GGWCC 1 cut(s) 364
BmeRI GACNNNNNGTC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 364
BmiI GGNNCC 2 cut(s) 696, 795
BmrFI CCNGG 3 cut(s) 692, 791, 878
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 2 cut(s) 603, 871
BmuI ACTGGG 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 641
BpuEI CTTGAG 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 692
BsaBI GATNNNNATC 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 527
BsaJI CCNNGG 3 cut(s) 568, 789, 877
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 3 cut(s) 299, 704, 790
Bse1I ACTGG 3 cut(s) 359, 825, 857
Bse3DI GCAATG 2 cut(s) 196, 762
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 2 cut(s) 791, 878
BseDI CCNNGG 3 cut(s) 568, 789, 877
BseGI GGATG 1 cut(s) 618
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 3 cut(s) 299, 704, 790
BseMI GCAATG 2 cut(s) 196, 762
BseNI ACTGG 3 cut(s) 359, 825, 857
BseSI GKGCMC 1 cut(s) 407
BseXI GCAGC 2 cut(s) 596, 871
BsgI GTGCAG 1 cut(s) 744
BsiHKAI GWGCWC 1 cut(s) 537
BsiSI CCGG 4 cut(s) 320, 530, 692, 705
BslFI GGGAC 1 cut(s) 699
BslI CCNNNNNNNGG 3 cut(s) 299, 704, 790
BsmFI GGGAC 1 cut(s) 699
Bsp1286I GDGCHC 2 cut(s) 407, 537
Bsp143I GATC 4 cut(s) 55, 187, 277, 637
BspACI CCGC 6 cut(s) 111, 517, 616, 683, 698, 856
BspLI GGNNCC 2 cut(s) 696, 795
BspMAI CTGCAG 1 cut(s) 736
BspPI GGATC 1 cut(s) 50
BspTI CTTAAG 1 cut(s) 41
BsrDI GCAATG 2 cut(s) 196, 762
BsrI ACTGG 3 cut(s) 359, 825, 857
BssECI CCNNGG 3 cut(s) 568, 789, 877
BssMI GATC 4 cut(s) 55, 187, 277, 637
BssNAI GTATAC 1 cut(s) 801
BssNI GRCGYC 1 cut(s) 527
BssSI CACGAG 1 cut(s) 406
BssT1I CCWWGG 1 cut(s) 568
Bst1107I GTATAC 1 cut(s) 801
Bst2BI CACGAG 1 cut(s) 406
Bst2UI CCWGG 2 cut(s) 791, 878
Bst4CI ACNGT 1 cut(s) 774
Bst6I CTCTTC 3 cut(s) 150, 299, 641
BstACI GRCGYC 1 cut(s) 527
BstAFI CTTAAG 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 731
BstC8I GCNNGC 4 cut(s) 203, 702, 712, 753
BstF5I GGATG 1 cut(s) 618
BstHHI GCGC 1 cut(s) 886
BstKTI GATC 4 cut(s) 58, 190, 280, 640
BstMBI GATC 4 cut(s) 55, 187, 277, 637
BstMWI GCNNNNNNNGC 2 cut(s) 584, 731
BstNI CCWGG 2 cut(s) 791, 878
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 3 cut(s) 690, 789, 876
BstSFI CTRYAG 1 cut(s) 732
BstSLI GKGCMC 1 cut(s) 407
BstV1I GCAGC 2 cut(s) 596, 871
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 801
BtsCI GGATG 1 cut(s) 618
BtsIMutI CAGTG 1 cut(s) 779
Cac8I GCNNGC 4 cut(s) 203, 702, 712, 753
CaiI CAGNNNCTG 1 cut(s) 731
CfoI GCGC 1 cut(s) 886
Cfr13I GGNCC 1 cut(s) 364
CseI GACGC 1 cut(s) 535
Csp6I GTAC 3 cut(s) 411, 828, 844
CspCI CAANNNNNGTGG 2 cut(s) 755, 790
CviAII CATG 3 cut(s) 149, 202, 350
CviQI GTAC 3 cut(s) 411, 828, 844
DpnI GATC 4 cut(s) 57, 189, 279, 639
DpnII GATC 4 cut(s) 55, 187, 277, 637
DraI TTTAAA 1 cut(s) 543
DriI GACNNNNNGTC 1 cut(s) 36
Eam1104I CTCTTC 3 cut(s) 150, 299, 641
Eam1105I GACNNNNNGTC 1 cut(s) 36
EarI CTCTTC 3 cut(s) 150, 299, 641
EciI GGCGGA 1 cut(s) 532
Ecl136II GAGCTC 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 537
Eco32I GATATC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 364
Eco53kI GAGCTC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 600
EcoICRI GAGCTC 1 cut(s) 535
EcoRI GAATTC 1 cut(s) 428
EcoRII CCWGG 2 cut(s) 789, 876
EcoRV GATATC 1 cut(s) 501
EcoT14I CCWWGG 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 3 cut(s) 152, 205, 353
FaiI YATR 9 cut(s) 150, 203, 285, 351, 523, 551, 801, 805, 807
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FaqI GGGAC 1 cut(s) 699
FatI CATG 3 cut(s) 148, 201, 349
FauI CCCGC 2 cut(s) 609, 676
FauNDI CATATG 1 cut(s) 805
FblI GTMKAC 1 cut(s) 800
Fnu4HI GCNGC 3 cut(s) 585, 857, 860
FokI GGATG 1 cut(s) 625
FriOI GRGCYC 1 cut(s) 537
Fsp4HI GCNGC 3 cut(s) 585, 857, 860
FspBI CTAG 6 cut(s) 23, 89, 128, 330, 599, 892
GlaI GCGC 1 cut(s) 885
GluI GCNGC 3 cut(s) 585, 857, 860
GsuI CTGGAG 1 cut(s) 641
HapII CCGG 4 cut(s) 320, 530, 692, 705
HgaI GACGC 1 cut(s) 535
HhaI GCGC 1 cut(s) 886
Hin1I GRCGYC 1 cut(s) 527
Hin1II CATG 3 cut(s) 152, 205, 353
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HinfI GANTC 8 cut(s) 5, 37, 382, 449, 649, 687, 728, 778
HpaII CCGG 4 cut(s) 320, 530, 692, 705
HphI GGTGA 2 cut(s) 241, 272
Hpy166II GTNNAC 2 cut(s) 777, 801
Hpy188I TCNGA 4 cut(s) 124, 368, 420, 668
Hpy188III TCNNGA 5 cut(s) 23, 211, 256, 504, 658
Hpy8I GTNNAC 2 cut(s) 777, 801
Hpy99I CGWCG 2 cut(s) 372, 446
HpyAV CCTTC 2 cut(s) 208, 547
HpyCH4III ACNGT 1 cut(s) 774
HpyCH4IV ACGT 2 cut(s) 288, 441
HpyCH4V TGCA 4 cut(s) 201, 221, 725, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 584, 731
HpySE526I ACGT 2 cut(s) 288, 441
Hsp92I GRCGYC 1 cut(s) 527
Hsp92II CATG 3 cut(s) 152, 205, 353
HspAI GCGC 1 cut(s) 884
Kzo9I GATC 4 cut(s) 55, 187, 277, 637
LmnI GCTCC 5 cut(s) 124, 532, 540, 707, 881
Lsp1109I GCAGC 2 cut(s) 596, 871
LweI GCATC 2 cut(s) 603, 871
MaeI CTAG 6 cut(s) 23, 89, 128, 330, 599, 892
MaeII ACGT 2 cut(s) 288, 441
MalI GATC 4 cut(s) 57, 189, 279, 639
MboI GATC 4 cut(s) 55, 187, 277, 637
MboII GAAGA 6 cut(s) 164, 167, 316, 333, 658, 734
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 2 cut(s) 407, 537
MlyI GAGTC 7 cut(s) 46, 391, 443, 658, 681, 737, 772
MmeI TCCRAC 3 cut(s) 102, 391, 443
MnlI CCTC 7 cut(s) 58, 204, 220, 300, 394, 566, 603
MseI TTAA 4 cut(s) 42, 438, 542, 621
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 4 cut(s) 320, 530, 692, 705
MspR9I CCNGG 3 cut(s) 692, 791, 878
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 2 cut(s) 791, 878
MwoI GCNNNNNNNGC 2 cut(s) 584, 731
NciI CCSGG 1 cut(s) 692
NdeI CATATG 1 cut(s) 805
NdeII GATC 4 cut(s) 55, 187, 277, 637
NlaIII CATG 3 cut(s) 152, 205, 353
NlaIV GGNNCC 2 cut(s) 696, 795
NspI RCATGY 1 cut(s) 205
PaeI GCATGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 5
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 3 cut(s) 586, 858, 861
PleI GAGTC 7 cut(s) 45, 390, 443, 657, 681, 736, 772
PpsI GAGTC 7 cut(s) 45, 390, 443, 657, 681, 736, 772
Psp124BI GAGCTC 1 cut(s) 537
Psp6I CCWGG 2 cut(s) 789, 876
PspGI CCWGG 2 cut(s) 789, 876
PspN4I GGNNCC 2 cut(s) 696, 795
PspPI GGNCC 1 cut(s) 364
PstI CTGCAG 1 cut(s) 736
PstNI CAGNNNCTG 1 cut(s) 731
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 3 cut(s) 412, 829, 845
RsaNI GTAC 3 cut(s) 411, 828, 844
SacI GAGCTC 1 cut(s) 537
SaqAI TTAA 4 cut(s) 42, 438, 542, 621
SatI GCNGC 3 cut(s) 585, 857, 860
Sau3AI GATC 4 cut(s) 55, 187, 277, 637
Sau96I GGNCC 1 cut(s) 364
ScaI AGTACT 2 cut(s) 829, 845
SchI GAGTC 7 cut(s) 46, 391, 443, 658, 681, 737, 772
ScrFI CCNGG 3 cut(s) 692, 791, 878
SduI GDGCHC 2 cut(s) 407, 537
SfaNI GCATC 2 cut(s) 603, 871
SfcI CTRYAG 1 cut(s) 732
SinI GGWCC 1 cut(s) 364
SmlI CTYRAG 2 cut(s) 34, 41
SmoI CTYRAG 2 cut(s) 34, 41
SpeI ACTAGT 1 cut(s) 598
SphI GCATGC 1 cut(s) 205
SsiI CCGC 6 cut(s) 111, 517, 616, 683, 698, 856
SspMI CTAG 6 cut(s) 23, 89, 128, 330, 599, 892
SstI GAGCTC 1 cut(s) 537
StyD4I CCNGG 3 cut(s) 690, 789, 876
StyI CCWWGG 1 cut(s) 568
TaaI ACNGT 1 cut(s) 774
TaiI ACGT 2 cut(s) 291, 444
TaqI TCGA 2 cut(s) 444, 848
TatI WGTACW 3 cut(s) 410, 827, 843
TauI GCSGC 1 cut(s) 859
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 4 cut(s) 42, 438, 542, 621
Tru9I TTAA 4 cut(s) 42, 438, 542, 621
TscAI CASTG 1 cut(s) 779
TseI GCWGC 2 cut(s) 584, 859
TspDTI ATGAA 3 cut(s) 165, 566, 734
TspGWI ACGGA 1 cut(s) 786
TspRI CASTG 1 cut(s) 779
Van91I CCANNNNNTGG 1 cut(s) 299
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 364
XapI RAATTY 5 cut(s) 132, 243, 428, 545, 669
XbaI TCTAGA 1 cut(s) 22
XceI RCATGY 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 800
XspI CTAG 6 cut(s) 23, 89, 128, 330, 599, 892
ZrmI AGTACT 2 cut(s) 829, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.