FvH4_6g46323
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016883
Physical Location & Seq
Forward (+)
35372595 .. 35375044
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46323.t1

Sequence Viewer

Length: 885 bp
ATGGCTTCAACATCAAACATTGTAGATCTAAAGCTGACATTGAGTCTTAAGCCCTCCTGGGTTCCCAAATCCATAAACAACCTACTGATTGAGATTGCTCAAATTAACAATGCTTCAGCAAAATTGTCGAAGCTAGAAACTTATCTGCGAAAGCATGAGGAAGAAATGCGTAGAATTCAGACATTTGATAGAGATCATAATCTGCCTCACTGCATGCTTCTCTTGAAGGATGCGATTGAAGTGATACATGAGCAAATTTCGATTATCAAGAATGGTAAAGTAGAAGCTGATCACCATACCGCGCCGTTGATTTGGAAGAACCGAAATCAACCAGAAAAACCTAGCTTTCCGCCTTCCAAGCATGATTGGGTTTCGATGGTGCGACCAAGCAAATGGAGTAAAAAAGAAGAACCGGAGGGCACTAGTACAAATCTGAGGCCTAATTTCAACATTAACGTCAATGACTGCTCAACCGCCTCAACGCCAATAGTAAATAATCACGTATCCCCCTTACCGATAGAGATCTCGAGAAATGGCCGGCGGATTTGGACGCCGGAGCTCCATTCAAGATTTATGAAGGCAATAAATGACCTTGGAGGTGCCGAAGCAGCTACTCCCAAACTAGTTAAAGATAGGATGCGGGTTGATGGGCTTACGAACGATCAAGTGAAGAGTCATCTACAGAAATTGAGGATATACAAAAGAGCGGGACTCCCGATTCGGCAAGCCGGAGCTGGCAGTAGTAGTGCAGATGTAGACAGTTTTCATCAGCCAGCAGCTGCAATGGCATCACAAGGAAACTCGACTCTCCAATCACAAGTTCCCTATACTAGGGATTTCTTTGGGATAATCAGTAGTACTTCACCTGCTCACGACTCGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

295

Amino Acids

32.93

Weight (kDa)

9.47

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 14 - 86 1e-21 HHO5-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016883)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18211 FvH4_6g46323
malus_domestica MD17G1066200.v1.1
prunus_persica Prupe.3G248500_v2.0.a1
pyrus_communis pycom17g06640
rosa_laevigata RLG00000021490
rosa_multiflora Rmu_sc0000946.1_g000034
rosa_roxburghii Rroxscaffold_2G00086290
rosa_rugosa Rorug02G0510500
rosa_samantha Rh2AG578600 Rh2BG589900 Rh2CG560500 Rh2DG600100
rosa_wichuraiana Rw2G048040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 874
Acc36I ACCTGC 1 cut(s) 874
AccB1I GGYRCC 1 cut(s) 599
AccBSI CCGCTC 1 cut(s) 707
AccI GTMKAC 1 cut(s) 756
AccII CGCG 1 cut(s) 302
AciI CCGC 6 cut(s) 300, 350, 474, 541, 640, 707
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 2 cut(s) 174, 255
AcuI CTGAAG 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 551
AfaI GTAC 2 cut(s) 427, 859
AfiI CCNNNNNNNGG 1 cut(s) 831
AflII CTTAAG 1 cut(s) 47
AgsI TTSAA 5 cut(s) 9, 226, 239, 448, 567
AhdI GACNNNNNGTC 1 cut(s) 42
AhlI ACTAGT 2 cut(s) 422, 622
AjnI CCWGG 1 cut(s) 56
AjuI GAANNNNNNNTTGG 2 cut(s) 804, 836
AluBI AGCT 8 cut(s) 34, 133, 287, 345, 559, 611, 734, 779
AluI AGCT 8 cut(s) 34, 133, 287, 345, 559, 611, 734, 779
Alw21I GWGCWC 1 cut(s) 561
AlwNI CAGNNNCTG 1 cut(s) 779
Ama87I CYCGRG 1 cut(s) 526
AoxI GGCC 2 cut(s) 437, 535
ApeKI GCWGC 3 cut(s) 608, 776, 779
ApoI RAATTY 2 cut(s) 174, 255
ArsI GACNNNNNNTTYG 2 cut(s) 702, 734
AspLEI GCGC 1 cut(s) 304
AsuHPI GGTGA 2 cut(s) 284, 855
AvaI CYCGRG 1 cut(s) 526
BaeGI GKGCMC 1 cut(s) 422
BanI GGYRCC 1 cut(s) 599
BanII GRGCYC 1 cut(s) 561
Bbv12I GWGCWC 1 cut(s) 561
BbvI GCAGC 3 cut(s) 620, 766, 788
BccI CCATC 2 cut(s) 370, 641
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BciT130I CCWGG 1 cut(s) 58
BciVI GTATCC 1 cut(s) 514
BclI TGATCA 1 cut(s) 289
BcuI ACTAGT 2 cut(s) 422, 622
BfaI CTAG 5 cut(s) 134, 342, 423, 623, 831
BfmI CTRYAG 1 cut(s) 680
BfrI CTTAAG 1 cut(s) 47
BfuAI ACCTGC 1 cut(s) 874
BfuI GTATCC 1 cut(s) 514
BglII AGATCT 2 cut(s) 25, 522
BisI GCNGC 3 cut(s) 609, 777, 780
BlsI GCNGC 3 cut(s) 610, 778, 781
BmcAI AGTACT 1 cut(s) 859
Bme1390I CCNGG 1 cut(s) 58
BmeRI GACNNNNNGTC 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 526
BmiI GGNNCC 2 cut(s) 63, 601
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 3 cut(s) 220, 627, 797
BplI GAGNNNNNCTC 2 cut(s) 696, 728
BsaAI YACGTR 1 cut(s) 502
BsaBI GATNNNNATC 3 cut(s) 192, 198, 521
BsaHI GRCGYC 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 57, 592
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 1 cut(s) 831
Bse118I RCCGGY 1 cut(s) 537
Bse3DI GCAATG 1 cut(s) 789
Bse8I GATNNNNATC 3 cut(s) 192, 198, 521
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 2 cut(s) 57, 592
BseGI GGATG 2 cut(s) 235, 642
BseJI GATNNNNATC 3 cut(s) 192, 198, 521
BseLI CCNNNNNNNGG 1 cut(s) 831
BseMI GCAATG 1 cut(s) 789
BseMII CTCAG 1 cut(s) 425
BseSI GKGCMC 1 cut(s) 422
BseXI GCAGC 3 cut(s) 620, 766, 788
BsgI GTGCAG 1 cut(s) 768
Bsh1236I CGCG 1 cut(s) 302
BshFI GGCC 2 cut(s) 439, 537
BshNI GGYRCC 1 cut(s) 599
BsiHKAI GWGCWC 1 cut(s) 561
BsiHKCI CYCGRG 1 cut(s) 526
BsiSI CCGG 4 cut(s) 413, 538, 554, 729
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 1 cut(s) 831
BsmFI GGGAC 1 cut(s) 723
BsnI GGCC 2 cut(s) 439, 537
BsoBI CYCGRG 1 cut(s) 526
Bsp1286I GDGCHC 2 cut(s) 422, 561
Bsp143I GATC 5 cut(s) 25, 193, 289, 522, 661
BspACI CCGC 6 cut(s) 300, 350, 474, 541, 640, 707
BspANI GGCC 2 cut(s) 439, 537
BspCNI CTCAG 1 cut(s) 426
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 2 cut(s) 63, 601
BspMI ACCTGC 1 cut(s) 874
BspT107I GGYRCC 1 cut(s) 599
BspTI CTTAAG 1 cut(s) 47
BsrBI CCGCTC 1 cut(s) 707
BsrDI GCAATG 1 cut(s) 789
BsrFI RCCGGY 1 cut(s) 537
BssAI RCCGGY 1 cut(s) 537
BssECI CCNNGG 2 cut(s) 57, 592
BssMI GATC 5 cut(s) 25, 193, 289, 522, 661
BssNI GRCGYC 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 592
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 761
Bst6I CTCTTC 1 cut(s) 665
BstACI GRCGYC 1 cut(s) 551
BstAFI CTTAAG 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 502
BstC8I GCNNGC 5 cut(s) 215, 539, 726, 736, 774
BstDEI CTNAG 1 cut(s) 434
BstENI CCTNNNNNAGG 1 cut(s) 829
BstF5I GGATG 2 cut(s) 235, 642
BstFNI CGCG 1 cut(s) 302
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 5 cut(s) 28, 196, 292, 525, 664
BstMBI GATC 5 cut(s) 25, 193, 289, 522, 661
BstMWI GCNNNNNNNGC 3 cut(s) 358, 608, 785
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 680
BstSLI GKGCMC 1 cut(s) 422
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 3 cut(s) 620, 766, 788
BstX2I RGATCY 2 cut(s) 25, 522
BstXI CCANNNNNNTGG 1 cut(s) 393
BstYI RGATCY 2 cut(s) 25, 522
BsuI GTATCC 1 cut(s) 514
BsuRI GGCC 2 cut(s) 439, 537
BtsCI GGATG 2 cut(s) 235, 642
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 208
BveI ACCTGC 1 cut(s) 874
Cac8I GCNNGC 5 cut(s) 215, 539, 726, 736, 774
CaiI CAGNNNCTG 1 cut(s) 779
CfoI GCGC 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 537
CseI GACGC 1 cut(s) 559
Csp6I GTAC 2 cut(s) 426, 858
CviAII CATG 4 cut(s) 155, 214, 248, 362
CviQI GTAC 2 cut(s) 426, 858
DdeI CTNAG 1 cut(s) 434
DpnI GATC 5 cut(s) 27, 195, 291, 524, 663
DpnII GATC 5 cut(s) 25, 193, 289, 522, 661
DriI GACNNNNNGTC 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 535
Eam1104I CTCTTC 1 cut(s) 665
Eam1105I GACNNNNNGTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 665
EciI GGCGGA 2 cut(s) 339, 556
Ecl136II GAGCTC 1 cut(s) 559
Eco130I CCWWGG 1 cut(s) 592
Eco147I AGGCCT 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 561
Eco53kI GAGCTC 1 cut(s) 559
Eco57I CTGAAG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 526
EcoICRI GAGCTC 1 cut(s) 559
EcoNI CCTNNNNNAGG 1 cut(s) 829
EcoRI GAATTC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 592
EcoT38I GRGCYC 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 592
FaeI CATG 4 cut(s) 158, 217, 251, 365
FaqI GGGAC 1 cut(s) 723
FatI CATG 4 cut(s) 154, 213, 247, 361
FauI CCCGC 2 cut(s) 633, 700
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 3 cut(s) 609, 777, 780
FokI GGATG 2 cut(s) 242, 649
FriOI GRGCYC 1 cut(s) 561
Fsp4HI GCNGC 3 cut(s) 609, 777, 780
FspBI CTAG 5 cut(s) 134, 342, 423, 623, 831
GlaI GCGC 1 cut(s) 303
GluI GCNGC 3 cut(s) 609, 777, 780
HaeIII GGCC 2 cut(s) 439, 537
HapII CCGG 4 cut(s) 413, 538, 554, 729
HgaI GACGC 1 cut(s) 559
HhaI GCGC 1 cut(s) 304
Hin1I GRCGYC 1 cut(s) 551
Hin1II CATG 4 cut(s) 158, 217, 251, 365
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 6 cut(s) 43, 673, 711, 718, 805, 875
HpaII CCGG 4 cut(s) 413, 538, 554, 729
HphI GGTGA 2 cut(s) 284, 855
Hpy166II GTNNAC 1 cut(s) 757
Hpy188I TCNGA 2 cut(s) 180, 435
Hpy188III TCNNGA 7 cut(s) 223, 268, 526, 528, 567, 715, 872
Hpy8I GTNNAC 1 cut(s) 757
HpyAV CCTTC 3 cut(s) 220, 363, 571
HpyCH4III ACNGT 1 cut(s) 761
HpyCH4IV ACGT 2 cut(s) 456, 501
HpyCH4V TGCA 3 cut(s) 213, 749, 782
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 608, 785
HpyF3I CTNAG 1 cut(s) 434
HpySE526I ACGT 2 cut(s) 456, 501
Hsp92I GRCGYC 1 cut(s) 551
Hsp92II CATG 4 cut(s) 158, 217, 251, 365
HspAI GCGC 1 cut(s) 302
KroI GCCGGC 1 cut(s) 537
KroNI GCCGGC 1 cut(s) 539
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 5 cut(s) 25, 193, 289, 522, 661
LmnI GCTCC 3 cut(s) 556, 564, 731
Lsp1109I GCAGC 3 cut(s) 620, 766, 788
LweI GCATC 3 cut(s) 220, 627, 797
MaeI CTAG 5 cut(s) 134, 342, 423, 623, 831
MaeII ACGT 2 cut(s) 456, 501
MalI GATC 5 cut(s) 27, 195, 291, 524, 663
MbiI CCGCTC 1 cut(s) 707
MboI GATC 5 cut(s) 25, 193, 289, 522, 661
MboII GAAGA 4 cut(s) 173, 328, 419, 682
MflI RGATCY 2 cut(s) 25, 522
MhlI GDGCHC 2 cut(s) 422, 561
MluCI AATT 6 cut(s) 102, 122, 174, 255, 442, 686
MlyI GAGTC 5 cut(s) 52, 682, 705, 799, 869
MnlI CCTC 8 cut(s) 64, 151, 216, 409, 429, 487, 590, 684
MroNI GCCGGC 1 cut(s) 537
MseI TTAA 4 cut(s) 48, 105, 453, 627
MspA1I CMGCKG 1 cut(s) 779
MspCI CTTAAG 1 cut(s) 47
MspI CCGG 4 cut(s) 413, 538, 554, 729
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 3 cut(s) 358, 608, 785
NaeI GCCGGC 1 cut(s) 539
NdeII GATC 5 cut(s) 25, 193, 289, 522, 661
NgoMIV GCCGGC 1 cut(s) 537
NlaIII CATG 4 cut(s) 158, 217, 251, 365
NlaIV GGNNCC 2 cut(s) 63, 601
NspI RCATGY 1 cut(s) 217
PaeI GCATGC 1 cut(s) 217
PaeR7I CTCGAG 1 cut(s) 526
PaqCI CACCTGC 1 cut(s) 874
PceI AGGCCT 1 cut(s) 439
PdiI GCCGGC 1 cut(s) 539
PfeI GAWTC 1 cut(s) 718
PkrI GCNGC 3 cut(s) 610, 778, 781
PleI GAGTC 5 cut(s) 51, 681, 705, 799, 869
PpsI GAGTC 5 cut(s) 51, 681, 705, 799, 869
Ppu21I YACGTR 1 cut(s) 502
Psp124BI GAGCTC 1 cut(s) 561
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 63, 601
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 2 cut(s) 25, 522
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 2 cut(s) 427, 859
RsaNI GTAC 2 cut(s) 426, 858
SacI GAGCTC 1 cut(s) 561
SaqAI TTAA 4 cut(s) 48, 105, 453, 627
SatI GCNGC 3 cut(s) 609, 777, 780
Sau3AI GATC 5 cut(s) 25, 193, 289, 522, 661
ScaI AGTACT 1 cut(s) 859
SchI GAGTC 5 cut(s) 52, 682, 705, 799, 869
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 2 cut(s) 422, 561
SfaNI GCATC 3 cut(s) 220, 627, 797
SfcI CTRYAG 1 cut(s) 680
Sfr274I CTCGAG 1 cut(s) 526
SlaI CTCGAG 1 cut(s) 526
SmlI CTYRAG 2 cut(s) 47, 526
SmoI CTYRAG 2 cut(s) 47, 526
SpeI ACTAGT 2 cut(s) 422, 622
SphI GCATGC 1 cut(s) 217
Sse9I AATT 6 cut(s) 102, 122, 174, 255, 442, 686
SseBI AGGCCT 1 cut(s) 439
SsiI CCGC 6 cut(s) 300, 350, 474, 541, 640, 707
SspMI CTAG 5 cut(s) 134, 342, 423, 623, 831
SstI GAGCTC 1 cut(s) 561
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 1 cut(s) 592
TaaI ACNGT 1 cut(s) 761
TaiI ACGT 2 cut(s) 459, 504
TaqI TCGA 6 cut(s) 128, 260, 374, 527, 803, 878
TasI AATT 6 cut(s) 102, 122, 174, 255, 442, 686
TatI WGTACW 2 cut(s) 425, 857
TfiI GAWTC 1 cut(s) 718
Tru1I TTAA 4 cut(s) 48, 105, 453, 627
Tru9I TTAA 4 cut(s) 48, 105, 453, 627
TscAI CASTG 1 cut(s) 215
TseI GCWGC 3 cut(s) 608, 776, 779
TspDTI ATGAA 2 cut(s) 590, 755
TspRI CASTG 1 cut(s) 215
Vha464I CTTAAG 1 cut(s) 47
XagI CCTNNNNNAGG 1 cut(s) 829
XapI RAATTY 2 cut(s) 174, 255
XceI RCATGY 1 cut(s) 217
XhoI CTCGAG 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 756
XspI CTAG 5 cut(s) 134, 342, 423, 623, 831
ZrmI AGTACT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.