RLG00000021490
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016883
Physical Location & Seq
Forward (+)
75861775 .. 75863968
2194 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021490

Sequence Viewer

Length: 891 bp
ATGGACTCAACATCTAATACTCTAGAGCTGACCTTGAGTCTTAAGCCCTCCTTTTTTCCCAAACCCCTAAACCACTTACTGACTAACCTAGCTCAAATTGATAGTGCTTCCGCAAAATTGTCGGAGCTAGAAATTTACCTGAACCAGCATGAAGAAGAGTTGCGTAGGGTTCAGGCTTTTGATAGAGATCTGCCTCATTGCATGCTTCTCTTGAAGGGTGCAATTGAGGTGATACAAGAGCAAATTTCAGTTATCAAGAATGGTAGCGTAGAAGCCGATCACCATACCGTGCCATTGATTGGGAAGAGGCGAAATCAACCGGAAAAACCTAGCTTTTCGTCTTCCAAGCATGACTGGATGGTCCGACCACATAAATGGAGTCAAACAGAAAAAATGGAGGGCACAAGTACAAATCCGACCCCTGAATTCAACATTAACGTCGATGACTCCACAACGCCGATAGTGAATAATCATTTACCTCCATTGCCAATAGAGATATCGAGAAATGGAAGGCGGATATGGACACCGGAGCTCCATTTAAACTTTATGAAGGCATTGAATGACCTCGGAGGTGCTGAAGCAGCTACTCCCAAACTAGTTAGAGAGAGGATGCGGGTTAAGGGGCTTACAAACGATCAAGTGAAGAGTCATCTCCAGAAGTTCAGAATTTACAAAAAGGCCGGACTCCCGGTTTCGCAAGCCGGAGCTGGCAGTAGTAGTGCAGAGTCTGCAGACAATCTTCATCAGCCAGCAATGGCATTACAAAAACAATGGACTCTCCAATCCCAGGTTCCGTATACATATGACTTTTTTGGCACAGCCAGTACTTCAAGTGGTCAGTACTCGAACTGGCCGCAGCATCAGGGAGATGACCAGGGAGCGCAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

297

Amino Acids

33.21

Weight (kDa)

6.87

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 12 - 82 2.5e-20 HHO5-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016883)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18211 FvH4_6g46323
malus_domestica MD17G1066200.v1.1
prunus_persica Prupe.3G248500_v2.0.a1
pyrus_communis pycom17g06640
rosa_laevigata RLG00000021490
rosa_multiflora Rmu_sc0000946.1_g000034
rosa_roxburghii Rroxscaffold_2G00086290
rosa_rugosa Rorug02G0510500
rosa_samantha Rh2AG578600 Rh2BG589900 Rh2CG560500 Rh2DG600100
rosa_wichuraiana Rw2G048040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 299
AccI GTMKAC 1 cut(s) 797
AciI CCGC 4 cut(s) 111, 514, 613, 854
AcoI YGGCCR 1 cut(s) 851
AcsI RAATTY 4 cut(s) 132, 243, 425, 666
AcuI CTGAAG 1 cut(s) 597
AfaI GTAC 3 cut(s) 409, 826, 842
AfiI CCNNNNNNNGG 2 cut(s) 299, 787
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 4 cut(s) 214, 430, 559, 831
AhdI GACNNNNNGTC 1 cut(s) 36
AhlI ACTAGT 1 cut(s) 595
AjnI CCWGG 2 cut(s) 786, 873
AjuI GAANNNNNNNTTGG 2 cut(s) 774, 806
AluBI AGCT 7 cut(s) 28, 92, 127, 333, 532, 584, 707
AluI AGCT 7 cut(s) 28, 92, 127, 333, 532, 584, 707
Alw21I GWGCWC 1 cut(s) 534
AlwNI CAGNNNCTG 1 cut(s) 728
AoxI GGCC 2 cut(s) 678, 851
ApeKI GCWGC 2 cut(s) 581, 856
ApoI RAATTY 4 cut(s) 132, 243, 425, 666
AspLEI GCGC 1 cut(s) 883
AspS9I GGNCC 1 cut(s) 361
AsuC2I CCSGG 1 cut(s) 689
AsuHPI GGTGA 2 cut(s) 241, 272
AvaII GGWCC 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 534
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 2 cut(s) 593, 868
BccI CCATC 1 cut(s) 352
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 2 cut(s) 788, 875
BcnI CCSGG 1 cut(s) 689
BcuI ACTAGT 1 cut(s) 595
BfaI CTAG 6 cut(s) 23, 89, 128, 330, 596, 889
BfmI CTRYAG 1 cut(s) 729
BfrI CTTAAG 1 cut(s) 41
BglII AGATCT 1 cut(s) 187
BisI GCNGC 3 cut(s) 582, 854, 857
BlsI GCNGC 3 cut(s) 583, 855, 858
BmcAI AGTACT 2 cut(s) 826, 842
Bme1390I CCNGG 3 cut(s) 689, 788, 875
Bme18I GGWCC 1 cut(s) 361
BmeRI GACNNNNNGTC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 792
BmrFI CCNGG 3 cut(s) 689, 788, 875
BmsI GCATC 2 cut(s) 600, 868
BpiI GAAGAC 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 638
BpuEI CTTGAG 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 689
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 565, 786, 874
BsaWI WCCGGW 2 cut(s) 319, 526
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 787
Bse1I ACTGG 3 cut(s) 359, 822, 854
Bse3DI GCAATG 3 cut(s) 196, 482, 759
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 2 cut(s) 788, 875
BseDI CCNNGG 3 cut(s) 565, 786, 874
BseGI GGATG 2 cut(s) 363, 615
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 299, 787
BseMI GCAATG 3 cut(s) 196, 482, 759
BseNI ACTGG 3 cut(s) 359, 822, 854
BseSI GKGCMC 1 cut(s) 404
BseXI GCAGC 2 cut(s) 593, 868
BsgI GTGCAG 1 cut(s) 741
BshFI GGCC 2 cut(s) 680, 853
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 5 cut(s) 320, 527, 681, 689, 702
BslI CCNNNNNNNGG 2 cut(s) 299, 787
BsnI GGCC 2 cut(s) 680, 853
Bsp1286I GDGCHC 2 cut(s) 404, 534
Bsp143I GATC 3 cut(s) 187, 277, 634
BspACI CCGC 4 cut(s) 111, 514, 613, 854
BspANI GGCC 2 cut(s) 680, 853
BspLI GGNNCC 1 cut(s) 792
BspMAI CTGCAG 1 cut(s) 733
BspTI CTTAAG 1 cut(s) 41
BsrDI GCAATG 3 cut(s) 196, 482, 759
BsrI ACTGG 3 cut(s) 359, 822, 854
BssECI CCNNGG 3 cut(s) 565, 786, 874
BssMI GATC 3 cut(s) 187, 277, 634
BssNAI GTATAC 1 cut(s) 798
Bst1107I GTATAC 1 cut(s) 798
Bst2UI CCWGG 2 cut(s) 788, 875
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 3 cut(s) 150, 299, 638
BstAFI CTTAAG 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 728
BstC8I GCNNGC 4 cut(s) 203, 699, 709, 750
BstF5I GGATG 2 cut(s) 363, 615
BstHHI GCGC 1 cut(s) 883
BstKTI GATC 3 cut(s) 190, 280, 637
BstMBI GATC 3 cut(s) 187, 277, 634
BstMWI GCNNNNNNNGC 2 cut(s) 581, 728
BstNI CCWGG 2 cut(s) 788, 875
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 3 cut(s) 687, 786, 873
BstSFI CTRYAG 1 cut(s) 729
BstSLI GKGCMC 1 cut(s) 404
BstV1I GCAGC 2 cut(s) 593, 868
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 375
BstYI RGATCY 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 798
BsuRI GGCC 2 cut(s) 680, 853
BtsCI GGATG 2 cut(s) 363, 615
Cac8I GCNNGC 4 cut(s) 203, 699, 709, 750
CaiI CAGNNNCTG 1 cut(s) 728
CfoI GCGC 1 cut(s) 883
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 3 cut(s) 408, 825, 841
CviAII CATG 3 cut(s) 149, 202, 350
CviQI GTAC 3 cut(s) 408, 825, 841
DpnI GATC 3 cut(s) 189, 279, 636
DpnII GATC 3 cut(s) 187, 277, 634
DraI TTTAAA 1 cut(s) 540
DrdI GACNNNNNNGTC 1 cut(s) 359
DriI GACNNNNNGTC 1 cut(s) 36
DseDI GACNNNNNNGTC 1 cut(s) 359
EaeI YGGCCR 1 cut(s) 851
Eam1104I CTCTTC 3 cut(s) 150, 299, 638
Eam1105I GACNNNNNGTC 1 cut(s) 36
EarI CTCTTC 3 cut(s) 150, 299, 638
EciI GGCGGA 1 cut(s) 529
Ecl136II GAGCTC 1 cut(s) 532
Eco24I GRGCYC 1 cut(s) 534
Eco32I GATATC 1 cut(s) 498
Eco47I GGWCC 1 cut(s) 361
Eco53kI GAGCTC 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 597
EcoICRI GAGCTC 1 cut(s) 532
EcoRI GAATTC 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 786, 873
EcoRV GATATC 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 534
FaeI CATG 3 cut(s) 152, 205, 353
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FatI CATG 3 cut(s) 148, 201, 349
FauI CCCGC 1 cut(s) 606
FauNDI CATATG 1 cut(s) 802
FblI GTMKAC 1 cut(s) 797
Fnu4HI GCNGC 3 cut(s) 582, 854, 857
FokI GGATG 2 cut(s) 370, 622
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 3 cut(s) 582, 854, 857
FspBI CTAG 6 cut(s) 23, 89, 128, 330, 596, 889
GlaI GCGC 1 cut(s) 882
GluI GCNGC 3 cut(s) 582, 854, 857
GsuI CTGGAG 1 cut(s) 638
HaeIII GGCC 2 cut(s) 680, 853
HapII CCGG 5 cut(s) 320, 527, 681, 689, 702
HhaI GCGC 1 cut(s) 883
Hin1II CATG 3 cut(s) 152, 205, 353
Hin6I GCGC 1 cut(s) 881
HinP1I GCGC 1 cut(s) 881
HinfI GANTC 8 cut(s) 5, 37, 379, 446, 646, 684, 725, 775
HpaII CCGG 5 cut(s) 320, 527, 681, 689, 702
HphI GGTGA 2 cut(s) 241, 272
Hpy166II GTNNAC 1 cut(s) 798
Hpy188I TCNGA 5 cut(s) 124, 365, 417, 569, 665
Hpy188III TCNNGA 5 cut(s) 23, 211, 256, 501, 655
Hpy8I GTNNAC 1 cut(s) 798
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 3 cut(s) 208, 504, 544
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 4 cut(s) 201, 221, 722, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 728
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 3 cut(s) 152, 205, 353
HspAI GCGC 1 cut(s) 881
Kzo9I GATC 3 cut(s) 187, 277, 634
LmnI GCTCC 5 cut(s) 124, 529, 537, 704, 878
Lsp1109I GCAGC 2 cut(s) 593, 868
LweI GCATC 2 cut(s) 600, 868
MaeI CTAG 6 cut(s) 23, 89, 128, 330, 596, 889
MaeII ACGT 1 cut(s) 438
MalI GATC 3 cut(s) 189, 279, 636
MboI GATC 3 cut(s) 187, 277, 634
MboII GAAGA 6 cut(s) 164, 167, 316, 333, 655, 731
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 2 cut(s) 404, 534
MluCI AATT 7 cut(s) 96, 116, 132, 222, 243, 425, 666
MlyI GAGTC 7 cut(s) 46, 388, 440, 655, 678, 734, 769
MmeI TCCRAC 3 cut(s) 102, 388, 440
MnlI CCTC 9 cut(s) 58, 204, 220, 300, 391, 489, 563, 575, 600
MseI TTAA 4 cut(s) 42, 435, 539, 618
MslI CAYNNNNRTG 1 cut(s) 373
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 5 cut(s) 320, 527, 681, 689, 702
MspR9I CCNGG 3 cut(s) 689, 788, 875
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 2 cut(s) 788, 875
MwoI GCNNNNNNNGC 2 cut(s) 581, 728
NciI CCSGG 1 cut(s) 689
NdeI CATATG 1 cut(s) 802
NdeII GATC 3 cut(s) 187, 277, 634
NlaIII CATG 3 cut(s) 152, 205, 353
NlaIV GGNNCC 1 cut(s) 792
NspI RCATGY 1 cut(s) 205
PaeI GCATGC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 3 cut(s) 583, 855, 858
PleI GAGTC 7 cut(s) 45, 387, 440, 654, 678, 733, 769
PpsI GAGTC 7 cut(s) 45, 387, 440, 654, 678, 733, 769
Psp124BI GAGCTC 1 cut(s) 534
Psp6I CCWGG 2 cut(s) 786, 873
PspGI CCWGG 2 cut(s) 786, 873
PspN4I GGNNCC 1 cut(s) 792
PspPI GGNCC 1 cut(s) 361
PstI CTGCAG 1 cut(s) 733
PstNI CAGNNNCTG 1 cut(s) 728
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 3 cut(s) 409, 826, 842
RsaNI GTAC 3 cut(s) 408, 825, 841
RseI CAYNNNNRTG 1 cut(s) 373
SacI GAGCTC 1 cut(s) 534
SaqAI TTAA 4 cut(s) 42, 435, 539, 618
SatI GCNGC 3 cut(s) 582, 854, 857
Sau3AI GATC 3 cut(s) 187, 277, 634
Sau96I GGNCC 1 cut(s) 361
ScaI AGTACT 2 cut(s) 826, 842
SchI GAGTC 7 cut(s) 46, 388, 440, 655, 678, 734, 769
ScrFI CCNGG 3 cut(s) 689, 788, 875
SduI GDGCHC 2 cut(s) 404, 534
SfaNI GCATC 2 cut(s) 600, 868
SfcI CTRYAG 1 cut(s) 729
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 373
SmlI CTYRAG 2 cut(s) 34, 41
SmoI CTYRAG 2 cut(s) 34, 41
SpeI ACTAGT 1 cut(s) 595
SphI GCATGC 1 cut(s) 205
Sse9I AATT 7 cut(s) 96, 116, 132, 222, 243, 425, 666
SsiI CCGC 4 cut(s) 111, 514, 613, 854
SspMI CTAG 6 cut(s) 23, 89, 128, 330, 596, 889
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 3 cut(s) 687, 786, 873
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 441
TaqI TCGA 3 cut(s) 441, 500, 845
TasI AATT 7 cut(s) 96, 116, 132, 222, 243, 425, 666
TatI WGTACW 3 cut(s) 407, 824, 840
TauI GCSGC 1 cut(s) 856
Tru1I TTAA 4 cut(s) 42, 435, 539, 618
Tru9I TTAA 4 cut(s) 42, 435, 539, 618
TseI GCWGC 2 cut(s) 581, 856
TspDTI ATGAA 3 cut(s) 165, 563, 731
TspGWI ACGGA 1 cut(s) 783
Van91I CCANNNNNTGG 1 cut(s) 299
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 4 cut(s) 132, 243, 425, 666
XbaI TCTAGA 1 cut(s) 22
XceI RCATGY 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 797
XspI CTAG 6 cut(s) 23, 89, 128, 330, 596, 889
ZrmI AGTACT 2 cut(s) 826, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.