Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016883

Physical Location & Seq

Genomic Coordinates Forward (+)

64126552 .. 64126965

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0510500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCCCACCGACGCCTGCCCCGGCTCGTCTCTGTCACGGTCCCCGGCCGTGTGCCCCGTCAATTGCTTCCGGCCCGACCCGGTCTGCGGCGTCGACGGCGTCACGTACTGGTGCGGGTGCCCGGATGCGCAGTGCGCCGGGGTCAAGGTCGCCAAGTTAGGGTTTTGCGAGGTGGGGAGTGCCGGTTCTGCCCCTCAGGCCTTGCTCTTGCAGCTCTCTAGCAGAGTTCTTGACTACATTGCGGATTTCGGATTTTCGGCAGCTGCCGCTGGGGAATTTCGTCGAACACTTGATGTGCATTCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010452 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032870 GO:0033993 GO:0034968 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0140110 GO:1901564 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

102

Amino Acids

10.51

Weight (kDa)

5.03

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016883)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18211 FvH4_6g46323
malus_domestica	MD17G1066200.v1.1
prunus_persica	Prupe.3G248500_v2.0.a1
pyrus_communis	pycom17g06640
rosa_laevigata	RLG00000021490
rosa_multiflora	Rmu_sc0000946.1_g000034
rosa_roxburghii	Rroxscaffold_2G00086290
rosa_rugosa	Rorug02G0510500
rosa_samantha	Rh2AG578600 Rh2BG589900 Rh2CG560500 Rh2DG600100
rosa_wichuraiana	Rw2G048040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	4 cut(s)	87, 114, 242, 267
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	275
AcyI	GRCGYC	3 cut(s)	12, 90, 99
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	86, 159
AloI	GAACNNNNNNTCC	2 cut(s)	169, 201
AluBI	AGCT	2 cut(s)	214, 263
AluI	AGCT	2 cut(s)	214, 263
Alw26I	GTCTC	1 cut(s)	33
AoxI	GGCC	3 cut(s)	45, 71, 198
ApeKI	GCWGC	3 cut(s)	211, 260, 263
ApoI	RAATTY	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	130, 137
AspS9I	GGNCC	2 cut(s)	39, 72
AsuC2I	CCSGG	5 cut(s)	21, 44, 80, 122, 139
AvaII	GGWCC	1 cut(s)	39
AxyI	CCTNAGG	1 cut(s)	195
BaeGI	GKGCMC	2 cut(s)	56, 122
BanI	GGYRCC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	223, 250, 272
BceAI	ACGGC	2 cut(s)	32, 112
BcnI	CCSGG	5 cut(s)	21, 44, 80, 122, 139
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	219
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	5 cut(s)	88, 212, 261, 264, 267
BlsI	GCNGC	5 cut(s)	89, 213, 262, 265, 268
Bme1390I	CCNGG	5 cut(s)	21, 44, 80, 122, 139
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	39, 72
BmiI	GGNNCC	2 cut(s)	41, 119
BmrFI	CCNGG	5 cut(s)	21, 44, 80, 122, 139
BmsI	GCATC	1 cut(s)	115
BpuMI	CCSGG	5 cut(s)	21, 44, 80, 122, 139
BsaAI	YACGTR	1 cut(s)	105
BsaHI	GRCGYC	3 cut(s)	12, 90, 99
BsaJI	CCNNGG	3 cut(s)	19, 42, 138
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 159
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	113
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	237
BseDI	CCNNGG	3 cut(s)	19, 42, 138
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	2 cut(s)	86, 159
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	113
BseSI	GKGCMC	2 cut(s)	56, 122
BseX3I	CGGCCG	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	223, 250, 272
BseYI	CCCAGC	1 cut(s)	269
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	47, 73, 200
BshNI	GGYRCC	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	48
BsiSI	CCGG	7 cut(s)	21, 44, 70, 80, 122, 138, 183
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	86, 159
BsmAI	GTCTC	1 cut(s)	33
BsmBI	CGTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	3 cut(s)	47, 73, 200
Bsp1286I	GDGCHC	2 cut(s)	56, 122
BspACI	CCGC	4 cut(s)	87, 114, 242, 267
BspANI	GGCC	3 cut(s)	47, 73, 200
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	41, 119
BspT107I	GGYRCC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	19, 42, 138
BssNI	GRCGYC	3 cut(s)	12, 90, 99
Bst4CI	ACNGT	1 cut(s)	39
BstACI	GRCGYC	3 cut(s)	12, 90, 99
BstBAI	YACGTR	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	130, 137
BstMAI	GTCTC	1 cut(s)	33
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 134, 188, 197, 211, 266
BstSCI	CCNGG	5 cut(s)	19, 42, 78, 120, 137
BstSLI	GKGCMC	2 cut(s)	56, 122
BstV1I	GCAGC	3 cut(s)	223, 250, 272
BstZI	CGGCCG	1 cut(s)	45
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	47, 73, 200
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	2 cut(s)	130, 137
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	39, 72
CseI	GACGC	3 cut(s)	20, 79, 88
Csp6I	GTAC	1 cut(s)	106
CviJI	RGCY	6 cut(s)	24, 47, 73, 200, 214, 263
CviKI_1	RGCY	6 cut(s)	24, 47, 73, 200, 214, 263
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	45
EagI	CGGCCG	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	39
Eco52I	CGGCCG	1 cut(s)	45
Eco81I	CCTNAGG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	33
FaqI	GGGAC	1 cut(s)	25
FauI	CCCGC	1 cut(s)	107
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	5 cut(s)	88, 212, 261, 264, 267
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	5 cut(s)	88, 212, 261, 264, 267
FspBI	CTAG	1 cut(s)	219
FspI	TGCGCA	1 cut(s)	129
GlaI	GCGC	2 cut(s)	129, 136
GluI	GCNGC	5 cut(s)	88, 212, 261, 264, 267
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	47, 73, 200
HapII	CCGG	7 cut(s)	21, 44, 70, 80, 122, 138, 183
HgaI	GACGC	3 cut(s)	20, 79, 88
HhaI	GCGC	2 cut(s)	130, 137
Hin1I	GRCGYC	3 cut(s)	12, 90, 99
Hin6I	GCGC	2 cut(s)	128, 135
HinP1I	GCGC	2 cut(s)	128, 135
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HpaII	CCGG	7 cut(s)	21, 44, 70, 80, 122, 138, 183
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	251
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	4 cut(s)	14, 95, 98, 285
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	2 cut(s)	211, 298
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 134, 188, 197, 211, 266
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	104
Hsp92I	GRCGYC	3 cut(s)	12, 90, 99
HspAI	GCGC	2 cut(s)	128, 135
Lsp1109I	GCAGC	3 cut(s)	223, 250, 272
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	2 cut(s)	33, 100
MfeI	CAATTG	1 cut(s)	61
MhlI	GDGCHC	2 cut(s)	56, 122
MluCI	AATT	2 cut(s)	61, 275
MnlI	CCTC	2 cut(s)	163, 204
MspA1I	CMGCKG	2 cut(s)	263, 269
MspI	CCGG	7 cut(s)	21, 44, 70, 80, 122, 138, 183
MspR9I	CCNGG	5 cut(s)	21, 44, 80, 122, 139
MunI	CAATTG	1 cut(s)	61
Mva1269I	GAATGC	1 cut(s)	298
MwoI	GCNNNNNNNGC	6 cut(s)	96, 134, 188, 197, 211, 266
NciI	CCSGG	5 cut(s)	21, 44, 80, 122, 139
NlaIV	GGNNCC	2 cut(s)	41, 119
NmuCI	GTSAC	2 cut(s)	33, 100
NsbI	TGCGCA	1 cut(s)	129
PceI	AGGCCT	1 cut(s)	200
PctI	GAATGC	1 cut(s)	298
PflFI	GACNNNGTC	2 cut(s)	80, 98
PkrI	GCNGC	5 cut(s)	89, 213, 262, 265, 268
Ppu21I	YACGTR	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	41, 119
PspPI	GGNCC	2 cut(s)	39, 72
PsyI	GACNNNGTC	2 cut(s)	80, 98
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SalI	GTCGAC	1 cut(s)	92
SatI	GCNGC	5 cut(s)	88, 212, 261, 264, 267
Sau96I	GGNCC	2 cut(s)	39, 72
ScrFI	CCNGG	5 cut(s)	21, 44, 80, 122, 139
SduI	GDGCHC	2 cut(s)	56, 122
SetI	ASST	5 cut(s)	107, 150, 174, 216, 265
SfaNI	GCATC	1 cut(s)	115
SgrDI	CGTCGACG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	39
Sse9I	AATT	2 cut(s)	61, 275
SseBI	AGGCCT	1 cut(s)	200
SsiI	CCGC	4 cut(s)	87, 114, 242, 267
SspMI	CTAG	1 cut(s)	219
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	5 cut(s)	19, 42, 78, 120, 137
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	2 cut(s)	93, 283
TasI	AATT	2 cut(s)	61, 275
TauI	GCSGC	2 cut(s)	90, 269
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	2 cut(s)	33, 100
TseI	GCWGC	3 cut(s)	211, 260, 263
Tsp45I	GTSAC	2 cut(s)	33, 100
TspRI	CASTG	1 cut(s)	137
Tth111I	GACNNNGTC	2 cut(s)	80, 98
VpaK11BI	GGWCC	1 cut(s)	39
XapI	RAATTY	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.