FvH4_6g18510
BZIP Family

Protein ABSCISIC ACID-INSENSITIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006875
Physical Location & Seq
Forward (+)
12261715 .. 12265273
3559 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18510.t1

Sequence Viewer

Length: 1314 bp
ATGGGTGGTGTCTCGGAGTCTGAAACGATGTCCCACAGCAGGGAGGAATCACCATTGCAGTCTGACCAACATGCCAAGAACAACCAACTATTCACGTCCTTAGGAAGAGAGTCTTCCATCTACTCTCTCACTCTCGACGAGTTCCAGCACACCCTCTGTGAGAACGGCAAGAATTTCGGGTCTATGAACATGGATGAGTTCCTCAACAGCATTTGGACTGCTGAAGAAAATCAAGCCATCAACTCCACCCACCACAACAACAATAATAACCTCAATGCCAACCACATCAACAATATAAGCAGCAGCAATGTCCAGCACCACGCTTCGAGCGAGGTCTCTACGGAAAAAAAGGGTATGATTGCCAGGCAACCAAGCTTGGCACGTCAGGGTTCACTCACCCTGCCTGCGCCATTGTGTAGGAAGACAGTGGATGAAGTTTGGTCTGAAATACACAGGGGTCAGAAAGCACAAGCTCAGCAACTAAACAATAACCACAATGATAGCAATGATGGTGCTCAGAATTCCGAGTATGCTGCTCGCCAGCCCACATTTGGGGAGATGACATTGGAGGATTTTCTGGTAAAAGCAGGGGTAGTTCGGGAACCAGATTCAATGTCAGTGGCTCCCCTCCCGCCCCAACCCCAACAGCAACCACAGCAGTATGGCGTAGTGGGACAAAGTTTTATGATGGGAATGGGTGCAAATGCTGGTGCTAGCACTAGTACTACTCCTGTTCTTCCCAATTATCAAACTATCCCTCAAGGTGGAGCCCCGGTGGGAGAGTCACCCGGGTATGCTACAAATGGCAAGAGGAATGGGGTATACCTGCCGCCACCGTCACAGGCAGTTTGTTTTGGTGGGAGAATGGTGAACGGTGGCGGTGGTTATGCCCCAACACAGCCAATTGGGATGGCTGCTCCTCTGAGTCCAGTGTCATCAGATGGGATGTGTGCGAGTCAGATTGAGAACTCAGGGGGCCAACATGGTATGGGTATGGGTGCACTGAGGGGAAGAAAGAGAATTATAGATGGTCCAGTGGAGAAGGTGGTGGAGAGGAGGCAGAGAAGGATGATTAAGAATAGAGAGTCTGCTGCAAGGTCTAGAGCCAGGAAACAGGCATACACTGTCGAGTTGGAGGCAGAACTGAACCAGTTAAGAGAAGAAAATGCAAACCTTAAACAGGCACTGACTGAGCTTGAGATGAAACGAAAGCAACAGCACTGTGAGGAAATGAGAAAAAGAGTTCAGAGCAGGGCGCAGAAAGCTATGGAGAAGCTGTGGATGCTGAAGAGGAGTCACAGTTGTGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010152 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

438

Amino Acids

47.92

Weight (kDa)

8.45

Isoelectric Point (pI)

62.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 351 - 401 1e-09 Basic region leucine zipper
bZIP_1 PF00170 352 - 403 1.3e-11 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 834
AccI GTMKAC 1 cut(s) 822
AciI CCGC 3 cut(s) 632, 830, 879
AcsI RAATTY 2 cut(s) 172, 520
AcuI CTGAAG 2 cut(s) 243, 1307
AfaI GTAC 1 cut(s) 724
AfiI CCNNNNNNNGG 6 cut(s) 39, 40, 551, 552, 764, 1180
AgsI TTSAA 1 cut(s) 612
AhlI ACTAGT 1 cut(s) 719
AjiI CACGTC 2 cut(s) 96, 383
AjnI CCWGG 2 cut(s) 362, 1106
AleI CACNNNNGTG 1 cut(s) 1302
AluBI AGCT 5 cut(s) 375, 473, 1195, 1265, 1276
AluI AGCT 5 cut(s) 375, 473, 1195, 1265, 1276
Alw21I GWGCWC 2 cut(s) 517, 1003
Alw26I GTCTC 2 cut(s) 16, 340
Alw44I GTGCAC 1 cut(s) 999
AlwNI CAGNNNCTG 1 cut(s) 1186
Ama87I CYCGRG 1 cut(s) 788
AoxI GGCC 1 cut(s) 976
ApaLI GTGCAC 1 cut(s) 999
ApeKI GCWGC 5 cut(s) 300, 303, 533, 914, 1091
ApoI RAATTY 2 cut(s) 172, 520
AspLEI GCGC 2 cut(s) 409, 1258
AspS9I GGNCC 2 cut(s) 976, 1031
AsuC2I CCSGG 3 cut(s) 773, 789, 790
AsuHPI GGTGA 4 cut(s) 42, 388, 777, 880
AsuNHI GCTAGC 1 cut(s) 713
AvaI CYCGRG 1 cut(s) 788
AvaII GGWCC 1 cut(s) 1031
AxyI CCTNAGG 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 1003
BanII GRGCYC 1 cut(s) 772
BbsI GAAGAC 2 cut(s) 105, 428
Bbv12I GWGCWC 2 cut(s) 517, 1003
BbvI GCAGC 5 cut(s) 312, 315, 520, 901, 1078
BccI CCATC 7 cut(s) 125, 245, 503, 682, 904, 935, 1022
BceAI ACGGC 1 cut(s) 181
BcgI CGANNNNNNTGC 4 cut(s) 157, 191, 515, 549
BciT130I CCWGG 2 cut(s) 364, 1108
BcnI CCSGG 3 cut(s) 773, 789, 790
BcoDI GTCTC 2 cut(s) 16, 340
BcuI ACTAGT 1 cut(s) 719
BfaI CTAG 3 cut(s) 714, 720, 1101
BfuAI ACCTGC 1 cut(s) 834
BisI GCNGC 6 cut(s) 301, 304, 534, 830, 915, 1092
BlpI GCTNAGC 1 cut(s) 474
BlsI GCNGC 6 cut(s) 302, 305, 535, 831, 916, 1093
BmcAI AGTACT 1 cut(s) 724
Bme1390I CCNGG 5 cut(s) 364, 773, 789, 790, 1108
Bme18I GGWCC 1 cut(s) 1031
BmeT110I CYCGRG 1 cut(s) 788
BmgBI CACGTC 2 cut(s) 96, 383
BmgT120I GGNCC 2 cut(s) 976, 1031
BmiI GGNNCC 4 cut(s) 603, 624, 769, 977
BmrFI CCNGG 5 cut(s) 364, 773, 789, 790, 1108
BmsI GCATC 1 cut(s) 1272
BmtI GCTAGC 1 cut(s) 717
BpiI GAAGAC 2 cut(s) 105, 428
Bpu1102I GCTNAGC 1 cut(s) 474
BpuEI CTTGAG 2 cut(s) 744, 1217
BpuMI CCSGG 3 cut(s) 773, 789, 790
BsaI GGTCTC 1 cut(s) 340
BsaJI CCNNGG 2 cut(s) 771, 788
BsaXI ACNNNNNCTCC 5 cut(s) 759, 789, 1262, 1285, 1292
Bsc4I CCNNNNNNNGG 6 cut(s) 39, 40, 551, 552, 764, 1180
Bse1I ACTGG 3 cut(s) 929, 1034, 1150
Bse21I CCTNAGG 1 cut(s) 100
Bse3DI GCAATG 3 cut(s) 53, 313, 511
BseBI CCWGG 2 cut(s) 364, 1108
BseDI CCNNGG 2 cut(s) 771, 788
BseGI GGATG 6 cut(s) 199, 436, 915, 951, 1074, 1287
BseLI CCNNNNNNNGG 6 cut(s) 39, 40, 551, 552, 764, 1180
BseMI GCAATG 3 cut(s) 53, 313, 511
BseMII CTCAG 6 cut(s) 488, 530, 914, 984, 995, 1182
BseNI ACTGG 3 cut(s) 929, 1034, 1150
BseRI GAGGAG 3 cut(s) 909, 1069, 1306
BseSI GKGCMC 1 cut(s) 1003
BseXI GCAGC 5 cut(s) 312, 315, 520, 901, 1078
BshFI GGCC 1 cut(s) 978
BsiHKAI GWGCWC 2 cut(s) 517, 1003
BsiHKCI CYCGRG 1 cut(s) 788
BsiSI CCGG 2 cut(s) 773, 789
BslFI GGGAC 2 cut(s) 16, 687
BslI CCNNNNNNNGG 6 cut(s) 39, 40, 551, 552, 764, 1180
BsmAI GTCTC 2 cut(s) 16, 340
BsmFI GGGAC 2 cut(s) 16, 687
BsnI GGCC 1 cut(s) 978
Bso31I GGTCTC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 788
Bsp1286I GDGCHC 3 cut(s) 517, 772, 1003
Bsp1720I GCTNAGC 1 cut(s) 474
BspACI CCGC 3 cut(s) 632, 830, 879
BspANI GGCC 1 cut(s) 978
BspCNI CTCAG 6 cut(s) 487, 529, 915, 983, 996, 1183
BspLI GGNNCC 4 cut(s) 603, 624, 769, 977
BspMI ACCTGC 1 cut(s) 834
BspOI GCTAGC 1 cut(s) 717
BspTNI GGTCTC 1 cut(s) 340
BsrDI GCAATG 3 cut(s) 53, 313, 511
BsrI ACTGG 3 cut(s) 929, 1034, 1150
BssECI CCNNGG 2 cut(s) 771, 788
BssNAI GTATAC 1 cut(s) 823
Bst1107I GTATAC 1 cut(s) 823
Bst2UI CCWGG 2 cut(s) 364, 1108
Bst4CI ACNGT 6 cut(s) 427, 837, 875, 1126, 1223, 1301
Bst6I CTCTTC 2 cut(s) 100, 1283
BstC8I GCNNGC 4 cut(s) 405, 538, 542, 715
BstDEI CTNAG 7 cut(s) 100, 474, 516, 923, 970, 1004, 1191
BstENI CCTNNNNNAGG 1 cut(s) 1178
BstF5I GGATG 6 cut(s) 199, 436, 915, 951, 1074, 1287
BstHHI GCGC 2 cut(s) 409, 1258
BstMAI GTCTC 2 cut(s) 16, 340
BstMWI GCNNNNNNNGC 3 cut(s) 655, 1262, 1282
BstNI CCWGG 2 cut(s) 364, 1108
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 5 cut(s) 362, 771, 787, 788, 1106
BstSLI GKGCMC 1 cut(s) 1003
BstV1I GCAGC 5 cut(s) 312, 315, 520, 901, 1078
BstV2I GAAGAC 2 cut(s) 105, 428
BstZ17I GTATAC 1 cut(s) 823
Bsu36I CCTNAGG 1 cut(s) 100
BsuRI GGCC 1 cut(s) 978
BtrI CACGTC 2 cut(s) 96, 383
BtsCI GGATG 6 cut(s) 199, 436, 915, 951, 1074, 1287
BtsIMutI CAGTG 8 cut(s) 432, 624, 936, 1001, 1041, 1122, 1184, 1219
BveI ACCTGC 1 cut(s) 834
Cac8I GCNNGC 4 cut(s) 405, 538, 542, 715
CaiI CAGNNNCTG 1 cut(s) 1186
CfoI GCGC 2 cut(s) 409, 1258
Cfr13I GGNCC 2 cut(s) 976, 1031
Cfr9I CCCGGG 1 cut(s) 788
Csp6I GTAC 1 cut(s) 723
CspCI CAANNNNNGTGG 2 cut(s) 600, 635
CviAII CATG 3 cut(s) 71, 190, 983
CviQI GTAC 1 cut(s) 723
DdeI CTNAG 7 cut(s) 100, 474, 516, 923, 970, 1004, 1191
Eam1104I CTCTTC 2 cut(s) 100, 1283
EarI CTCTTC 2 cut(s) 100, 1283
Eco24I GRGCYC 1 cut(s) 772
Eco31I GGTCTC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 1031
Eco57I CTGAAG 2 cut(s) 243, 1307
Eco81I CCTNAGG 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 788
EcoNI CCTNNNNNAGG 1 cut(s) 1178
EcoRI GAATTC 1 cut(s) 520
EcoRII CCWGG 2 cut(s) 362, 1106
EcoT38I GRGCYC 1 cut(s) 772
FaeI CATG 3 cut(s) 74, 193, 986
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FaqI GGGAC 2 cut(s) 16, 687
FatI CATG 3 cut(s) 70, 189, 982
FauI CCCGC 1 cut(s) 639
FblI GTMKAC 1 cut(s) 822
Fnu4HI GCNGC 6 cut(s) 301, 304, 534, 830, 915, 1092
FokI GGATG 6 cut(s) 206, 443, 922, 958, 1081, 1294
FriOI GRGCYC 1 cut(s) 772
Fsp4HI GCNGC 6 cut(s) 301, 304, 534, 830, 915, 1092
FspBI CTAG 3 cut(s) 714, 720, 1101
GlaI GCGC 2 cut(s) 408, 1257
GluI GCNGC 6 cut(s) 301, 304, 534, 830, 915, 1092
HaeIII GGCC 1 cut(s) 978
HapII CCGG 2 cut(s) 773, 789
HhaI GCGC 2 cut(s) 409, 1258
Hin1II CATG 3 cut(s) 74, 193, 986
Hin6I GCGC 2 cut(s) 407, 1256
HinP1I GCGC 2 cut(s) 407, 1256
HindIII AAGCTT 1 cut(s) 373
HinfI GANTC 9 cut(s) 17, 47, 110, 608, 782, 925, 955, 1085, 1294
HpaII CCGG 2 cut(s) 773, 789
HphI GGTGA 4 cut(s) 42, 388, 777, 880
Hpy166II GTNNAC 4 cut(s) 392, 823, 871, 1001
Hpy188III TCNNGA 3 cut(s) 134, 599, 1101
Hpy8I GTNNAC 4 cut(s) 392, 823, 871, 1001
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 1036, 1059
HpyCH4III ACNGT 6 cut(s) 427, 837, 875, 1126, 1223, 1301
HpyCH4IV ACGT 2 cut(s) 95, 382
HpyCH4V TGCA 5 cut(s) 58, 701, 1001, 1094, 1169
HpyF10VI GCNNNNNNNGC 3 cut(s) 655, 1262, 1282
HpyF3I CTNAG 7 cut(s) 100, 474, 516, 923, 970, 1004, 1191
HpySE526I ACGT 2 cut(s) 95, 382
Hsp92II CATG 3 cut(s) 74, 193, 986
HspAI GCGC 2 cut(s) 407, 1256
LmnI GCTCC 3 cut(s) 628, 767, 922
Lsp1109I GCAGC 5 cut(s) 312, 315, 520, 901, 1078
LweI GCATC 1 cut(s) 1272
MaeI CTAG 3 cut(s) 714, 720, 1101
MaeII ACGT 2 cut(s) 95, 382
MaeIII GTNAC 3 cut(s) 783, 837, 1295
MboII GAAGA 8 cut(s) 105, 117, 236, 433, 728, 1023, 1172, 1300
MfeI CAATTG 1 cut(s) 903
MhlI GDGCHC 3 cut(s) 517, 772, 1003
MluCI AATT 5 cut(s) 172, 520, 742, 903, 1020
MlyI GAGTC 7 cut(s) 26, 119, 791, 934, 964, 1094, 1303
MmeI TCCRAC 1 cut(s) 1113
MseI TTAA 3 cut(s) 1074, 1154, 1176
MslI CAYNNNNRTG 1 cut(s) 1302
MspI CCGG 2 cut(s) 773, 789
MspR9I CCNGG 5 cut(s) 364, 773, 789, 790, 1108
MunI CAATTG 1 cut(s) 903
MvaI CCWGG 2 cut(s) 364, 1108
MwoI GCNNNNNNNGC 3 cut(s) 655, 1262, 1282
NciI CCSGG 3 cut(s) 773, 789, 790
NheI GCTAGC 1 cut(s) 713
NlaIII CATG 3 cut(s) 74, 193, 986
NlaIV GGNNCC 4 cut(s) 603, 624, 769, 977
NmuCI GTSAC 3 cut(s) 783, 837, 1295
NspI RCATGY 1 cut(s) 74
OliI CACNNNNGTG 1 cut(s) 1302
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PfeI GAWTC 2 cut(s) 47, 608
PkrI GCNGC 6 cut(s) 302, 305, 535, 831, 916, 1093
PleI GAGTC 7 cut(s) 25, 118, 790, 933, 963, 1093, 1302
PpsI GAGTC 7 cut(s) 25, 118, 790, 933, 963, 1093, 1302
Psp6I CCWGG 2 cut(s) 362, 1106
PspGI CCWGG 2 cut(s) 362, 1106
PspN4I GGNNCC 4 cut(s) 603, 624, 769, 977
PspPI GGNCC 2 cut(s) 976, 1031
PstNI CAGNNNCTG 1 cut(s) 1186
RsaI GTAC 1 cut(s) 724
RsaNI GTAC 1 cut(s) 723
RseI CAYNNNNRTG 1 cut(s) 1302
SaqAI TTAA 3 cut(s) 1074, 1154, 1176
SatI GCNGC 6 cut(s) 301, 304, 534, 830, 915, 1092
Sau96I GGNCC 2 cut(s) 976, 1031
ScaI AGTACT 1 cut(s) 724
SchI GAGTC 7 cut(s) 26, 119, 791, 934, 964, 1094, 1303
ScrFI CCNGG 5 cut(s) 364, 773, 789, 790, 1108
SduI GDGCHC 3 cut(s) 517, 772, 1003
SfaNI GCATC 1 cut(s) 1272
SinI GGWCC 1 cut(s) 1031
SmaI CCCGGG 1 cut(s) 790
SmiMI CAYNNNNRTG 1 cut(s) 1302
SmlI CTYRAG 2 cut(s) 759, 1196
SmoI CTYRAG 2 cut(s) 759, 1196
SpeI ACTAGT 1 cut(s) 719
Sse9I AATT 5 cut(s) 172, 520, 742, 903, 1020
SsiI CCGC 3 cut(s) 632, 830, 879
SspMI CTAG 3 cut(s) 714, 720, 1101
StyD4I CCNGG 5 cut(s) 362, 771, 787, 788, 1106
TaaI ACNGT 6 cut(s) 427, 837, 875, 1126, 1223, 1301
TaiI ACGT 2 cut(s) 98, 385
TaqI TCGA 3 cut(s) 135, 326, 1128
TasI AATT 5 cut(s) 172, 520, 742, 903, 1020
TatI WGTACW 1 cut(s) 722
TauI GCSGC 1 cut(s) 832
TfiI GAWTC 2 cut(s) 47, 608
Tru1I TTAA 3 cut(s) 1074, 1154, 1176
Tru9I TTAA 3 cut(s) 1074, 1154, 1176
TscAI CASTG 8 cut(s) 432, 624, 936, 1008, 1041, 1129, 1191, 1226
TseFI GTSAC 3 cut(s) 783, 837, 1295
TseI GCWGC 5 cut(s) 300, 303, 533, 914, 1091
Tsp45I GTSAC 3 cut(s) 783, 837, 1295
TspDTI ATGAA 3 cut(s) 200, 447, 1217
TspGWI ACGGA 1 cut(s) 356
TspMI CCCGGG 1 cut(s) 788
TspRI CASTG 8 cut(s) 432, 624, 936, 1008, 1041, 1129, 1191, 1226
VneI GTGCAC 1 cut(s) 999
VpaK11BI GGWCC 1 cut(s) 1031
XagI CCTNNNNNAGG 1 cut(s) 1178
XapI RAATTY 2 cut(s) 172, 520
XbaI TCTAGA 1 cut(s) 1100
XceI RCATGY 1 cut(s) 74
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XmaI CCCGGG 1 cut(s) 788
XmiI GTMKAC 1 cut(s) 822
XspI CTAG 3 cut(s) 714, 720, 1101
ZrmI AGTACT 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.