Rroxscaffold_6G00408340
BZIP Family

Protein ABSCISIC ACID-INSENSITIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0006875
Physical Location & Seq
Reverse (-)
30772432 .. 30776273
3842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00408340.1

Sequence Viewer

Length: 978 bp
ATGACAAACACAACAATGGGCAGTGTCTCAGAGTCTGAAATGATGTCCCACGGCAAAGAGGAATTGCCATTGCAGTCTGACCAACATGCCAAGAACAACCAACTATTCACGTCCTTAGGAAGACAATCTTCCGTCTACTCTCTCACTCTCGACGAGTTCCAGCACACCCTCTCTGAGAACGGCAAGAATTTCGGGTCTATGAACATGGACGAGTTCCTCAACAGCATTTGGACTGCTGAAGAAAATCAAGCCATCAACTCCACCCACCACAACAACAGTAATAACCTCAATCCCAACCACATCAACAACATAAGCAACAACAATGTCCAGCACCCGGCTTTAAGCGAGGTCACTATTGAAAAAAAAGGTGTGATAGCCAAGCAACCAAGCTTGGTACGTCAGGGTTCACTCACGCTTCCTGCACAATGGTGCAGGAAGACGGTGGACGAAGTTTGGTCTGAAATACACAAAGAGCAGAAAGCACAAGCTCAGCAACAGAACAGTAACCACAACATTAGCAATGATGGTGCTCAGAATTCCGAGTATGTTCCTCGCCAGCCCACATTTGGGGAGATGACACTGGAGGATTTTTTAGTAAAAGCAGGGGTCGTTCGGGAACCAGATTCAATGTTAGTGGTGCCCCTCCCTCCTCAACCCCAACAGCAACCACAACAGTATGGCATAGTGGGACAAAGTTTTGTGATGGGAATGGGTGCAAATGCTGGTGCTAGCACTAGTACTACTCCTGTCGGAGAGTCATCTGGGTATGTTACAAATGGCAAGAGGAATGGGGCATACCCCCCACCACCGCCACAGGCAGTTTGTTTTGGAGGGAGAGTGGTCAATGGTGGCGGTGGTTATGCGCCAACACAGCCAATCGGGATGGCTACTCCTGTGAGTCCAGTGTCATCAGATGGGATGTGTGCGAGTCAGATTGAGAACTCAGGGGTCAATATGCTATGGATATGGGTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010152 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

325

Amino Acids

35.27

Weight (kDa)

5.43

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 637
AccI GTMKAC 1 cut(s) 135
AciI CCGC 2 cut(s) 809, 852
AcsI RAATTY 2 cut(s) 187, 535
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 2 cut(s) 396, 739
AfiI CCNNNNNNNGG 3 cut(s) 334, 566, 567
AgsI TTSAA 2 cut(s) 359, 627
AhlI ACTAGT 1 cut(s) 734
AjiI CACGTC 1 cut(s) 111
AleI CACNNNNGTG 1 cut(s) 427
AluBI AGCT 2 cut(s) 390, 488
AluI AGCT 2 cut(s) 390, 488
Alw21I GWGCWC 2 cut(s) 532, 975
Alw26I GTCTC 1 cut(s) 31
Alw44I GTGCAC 1 cut(s) 971
AlwNI CAGNNNCTG 1 cut(s) 35
ApaLI GTGCAC 1 cut(s) 971
ApoI RAATTY 2 cut(s) 187, 535
AspLEI GCGC 1 cut(s) 865
AsuC2I CCSGG 1 cut(s) 335
AsuNHI GCTAGC 1 cut(s) 728
AxyI CCTNAGG 1 cut(s) 115
BaeGI GKGCMC 2 cut(s) 642, 975
BanI GGYRCC 1 cut(s) 637
BbsI GAAGAC 2 cut(s) 127, 443
Bbv12I GWGCWC 2 cut(s) 532, 975
BccI CCATC 5 cut(s) 260, 518, 697, 877, 908
BceAI ACGGC 2 cut(s) 67, 196
BcgI CGANNNNNNTGC 2 cut(s) 172, 206
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 31
BcuI ACTAGT 1 cut(s) 734
BfaI CTAG 2 cut(s) 729, 735
BlpI GCTNAGC 1 cut(s) 489
BmcAI AGTACT 1 cut(s) 739
Bme1390I CCNGG 1 cut(s) 335
BmgBI CACGTC 1 cut(s) 111
BmiI GGNNCC 2 cut(s) 618, 639
BmrFI CCNGG 1 cut(s) 335
BmtI GCTAGC 1 cut(s) 732
BpiI GAAGAC 2 cut(s) 127, 443
BpmI CTGGAG 1 cut(s) 602
Bpu1102I GCTNAGC 1 cut(s) 489
BpuMI CCSGG 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 822, 852
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 566, 567
Bse1I ACTGG 2 cut(s) 585, 902
Bse21I CCTNAGG 1 cut(s) 115
Bse3DI GCAATG 2 cut(s) 68, 526
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 2 cut(s) 888, 924
BseLI CCNNNNNNNGG 3 cut(s) 334, 566, 567
BseMI GCAATG 2 cut(s) 68, 526
BseMII CTCAG 5 cut(s) 42, 165, 503, 545, 957
BseNI ACTGG 2 cut(s) 585, 902
BseRI GAGGAG 1 cut(s) 639
BseSI GKGCMC 2 cut(s) 642, 975
BsgI GTGCAG 2 cut(s) 405, 451
BshNI GGYRCC 1 cut(s) 637
BsiHKAI GWGCWC 2 cut(s) 532, 975
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 2 cut(s) 31, 702
BslI CCNNNNNNNGG 3 cut(s) 334, 566, 567
BsmAI GTCTC 1 cut(s) 31
BsmFI GGGAC 2 cut(s) 31, 702
Bsp1286I GDGCHC 3 cut(s) 532, 642, 975
Bsp1720I GCTNAGC 1 cut(s) 489
BspACI CCGC 2 cut(s) 809, 852
BspCNI CTCAG 5 cut(s) 41, 166, 502, 544, 956
BspLI GGNNCC 2 cut(s) 618, 639
BspOI GCTAGC 1 cut(s) 732
BspT107I GGYRCC 1 cut(s) 637
BsrDI GCAATG 2 cut(s) 68, 526
BsrI ACTGG 2 cut(s) 585, 902
BssECI CCNNGG 1 cut(s) 49
Bst4CI ACNGT 4 cut(s) 278, 442, 503, 675
BstC8I GCNNGC 2 cut(s) 557, 730
BstDEI CTNAG 6 cut(s) 28, 115, 174, 489, 531, 943
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 2 cut(s) 888, 924
BstHHI GCGC 1 cut(s) 865
BstMAI GTCTC 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 871
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 333
BstSLI GKGCMC 2 cut(s) 642, 975
BstV2I GAAGAC 2 cut(s) 127, 443
Bsu36I CCTNAGG 1 cut(s) 115
BtgI CCRYGG 1 cut(s) 49
BtrI CACGTC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 888, 924
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 4 cut(s) 28, 578, 909, 973
Cac8I GCNNGC 2 cut(s) 557, 730
CaiI CAGNNNCTG 1 cut(s) 35
CfoI GCGC 1 cut(s) 865
Csp6I GTAC 2 cut(s) 395, 738
CspCI CAANNNNNGTGG 2 cut(s) 615, 650
CviAII CATG 2 cut(s) 86, 205
CviJI RGCY 8 cut(s) 251, 338, 377, 390, 488, 559, 874, 887
CviKI_1 RGCY 8 cut(s) 251, 338, 377, 390, 488, 559, 874, 887
CviQI GTAC 2 cut(s) 395, 738
DdeI CTNAG 6 cut(s) 28, 115, 174, 489, 531, 943
Eco57I CTGAAG 1 cut(s) 258
Eco81I CCTNAGG 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 535
FaeI CATG 2 cut(s) 89, 208
FalI AAGNNNNNCTT 2 cut(s) 112, 144
FaqI GGGAC 2 cut(s) 31, 702
FatI CATG 2 cut(s) 85, 204
FblI GTMKAC 1 cut(s) 135
FokI GGATG 2 cut(s) 895, 931
FspBI CTAG 2 cut(s) 729, 735
GlaI GCGC 1 cut(s) 864
GsuI CTGGAG 1 cut(s) 602
HapII CCGG 1 cut(s) 335
HhaI GCGC 1 cut(s) 865
Hin1II CATG 2 cut(s) 89, 208
Hin6I GCGC 1 cut(s) 863
HinP1I GCGC 1 cut(s) 863
HindIII AAGCTT 1 cut(s) 388
HinfI GANTC 5 cut(s) 32, 623, 755, 898, 928
HpaII CCGG 1 cut(s) 335
Hpy166II GTNNAC 4 cut(s) 136, 407, 445, 973
Hpy188III TCNNGA 3 cut(s) 149, 614, 880
Hpy8I GTNNAC 4 cut(s) 136, 407, 445, 973
Hpy99I CGWCG 1 cut(s) 155
HpyCH4III ACNGT 4 cut(s) 278, 442, 503, 675
HpyCH4IV ACGT 2 cut(s) 110, 397
HpyCH4V TGCA 5 cut(s) 73, 422, 432, 716, 973
HpyF10VI GCNNNNNNNGC 1 cut(s) 871
HpyF3I CTNAG 6 cut(s) 28, 115, 174, 489, 531, 943
HpySE526I ACGT 2 cut(s) 110, 397
Hsp92II CATG 2 cut(s) 89, 208
HspAI GCGC 1 cut(s) 863
MaeI CTAG 2 cut(s) 729, 735
MaeII ACGT 2 cut(s) 110, 397
MaeIII GTNAC 3 cut(s) 349, 503, 769
MboII GAAGA 4 cut(s) 120, 132, 251, 448
MhlI GDGCHC 3 cut(s) 532, 642, 975
MluCI AATT 3 cut(s) 62, 187, 535
MlyI GAGTC 4 cut(s) 41, 764, 907, 937
MmeI TCCRAC 1 cut(s) 730
MseI TTAA 1 cut(s) 341
MslI CAYNNNNRTG 2 cut(s) 14, 427
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 871
NciI CCSGG 1 cut(s) 335
NheI GCTAGC 1 cut(s) 728
NlaIII CATG 2 cut(s) 89, 208
NlaIV GGNNCC 2 cut(s) 618, 639
NmuCI GTSAC 1 cut(s) 349
NspI RCATGY 1 cut(s) 89
OliI CACNNNNGTG 1 cut(s) 427
PfeI GAWTC 1 cut(s) 623
PleI GAGTC 4 cut(s) 40, 763, 906, 936
PpsI GAGTC 4 cut(s) 40, 763, 906, 936
PspN4I GGNNCC 2 cut(s) 618, 639
PstNI CAGNNNCTG 1 cut(s) 35
RsaI GTAC 2 cut(s) 396, 739
RsaNI GTAC 2 cut(s) 395, 738
RseI CAYNNNNRTG 2 cut(s) 14, 427
SaqAI TTAA 1 cut(s) 341
ScaI AGTACT 1 cut(s) 739
SchI GAGTC 4 cut(s) 41, 764, 907, 937
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 3 cut(s) 532, 642, 975
SetI ASST 7 cut(s) 113, 288, 351, 370, 392, 400, 490
SmiMI CAYNNNNRTG 2 cut(s) 14, 427
SpeI ACTAGT 1 cut(s) 734
Sse9I AATT 3 cut(s) 62, 187, 535
SsiI CCGC 2 cut(s) 809, 852
SspMI CTAG 2 cut(s) 729, 735
StyD4I CCNGG 1 cut(s) 333
TaaI ACNGT 4 cut(s) 278, 442, 503, 675
TaiI ACGT 2 cut(s) 113, 400
TaqI TCGA 1 cut(s) 150
TasI AATT 3 cut(s) 62, 187, 535
TatI WGTACW 1 cut(s) 737
TfiI GAWTC 1 cut(s) 623
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 3 cut(s) 28, 585, 909
TseFI GTSAC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 3 cut(s) 28, 585, 909
VneI GTGCAC 1 cut(s) 971
XapI RAATTY 2 cut(s) 187, 535
XceI RCATGY 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 2 cut(s) 729, 735
ZrmI AGTACT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.