Rw3G016040
BZIP Family

Protein ABSCISIC ACID-INSENSITIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006875
Physical Location & Seq
Reverse (-)
16695287 .. 16696969
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G016040.1

Sequence Viewer

Length: 1302 bp
ATGGGCGGTGTCTCAGAGTCTGAAATGATGTCCCACGGCAAAGAGGAATTGCCAGTGCAGTCTGACCAATATGCCAAGAACAACCAACTATTCACGTCCTTAGGAAGACAATCTTCCATCTACTCTCTCACTCTCGACGAGTTCCAGCACACCTTCTCTGAGAACGGCAAGAATTTCGGGTCTATGAACATGGACGAGTTCCTCAACAGCATTTGGACTGCTGAAGAAAATCAAGCCATCAACTCCACCCACCACAACAACAGTAATAACCTCAATCCCAACCACATCAACAACAATGTCCAGCACCCCGCCTTAAACGAGGTCACTATGGAAAAAAAAGGTGTGATAGCCAAGCAACCAAGCTTGCCACGTCAGGGTTCACTCACCCTTCCTGCACCATTGTGCAGGAAGACGGTAGACGAAGTTTGGTCTGAAATGCACAAAGAGCAGAAAGCACAAGCTCAGCAACAGAACAGTAACCACAACAATAGCAATGATGGTGCTCAGAATTCCGAGTATGTTCCTCGCCAGCCCACATTTGGGGAGATGACACTGGAGGATTTTTTAGTAAAAGCAGGGGTAGTTCGGGAACCAGATTCAATGTCAGTGGTGCCCCTCCCTCCTCAACCCCAACAGCAACCACAGCAGTATGGCATAGTGGGACAAAGTTTTGTGATGGGAATGGGTGCAAATGCCGGTGCTAGCACTAGTACTACTCCTGTTCTGCCCAATTACCAAACTATCCCTCAAGGTGGCGCCCCGGTCGGAGAGTCATCTGGGTATGTTACAAATGGCAAGAGGAATGGGGCATACCCCCCACCACCGCCACAGGCAGTTTGTTTTGGAGGGAGAGTAGTCAATGGTGGAGGTGGTTATGCCCCGACACAGCCAATCGGGATGGCTACTTCTGTGAGTCCAGTGTCATCAGATGGGATGTGTGCGAGTCAGATTGAGAACTCAGGGGGTCAATATGCTATGGATATGGGTGCACTGAGGGGAAGAAAGAGGATTATAGATGGTCCAGTGGAGAAGGTGGTGGAGAGGAGGCAGAGAAGGATGATTAAGAATAGAGAGTCTGCTGCAAGGTCTAGAGCCAGGAAACAGGCATATACTGTTGAATTGGAGGCAGAACTGAACCAATTAAGAGAAGAGAATGCAAACCTTAAACAGGCACTGGCTGAGCTTGAGATGAAACGAAAGCAACAGTACTGTGAGGAAATGAGAAAAAGAGTTCAGAGCAGGGCCCAGAAAGCTGTGGAGAAGCTGTGGATGCTGAAGAGGAGTCACAGTTGTGCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010152 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

433

Amino Acids

47.73

Weight (kDa)

8.46

Isoelectric Point (pI)

59.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 347 - 397 6.9e-10 Basic region leucine zipper
bZIP_1 PF00170 348 - 396 5.4e-12 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 610, 755
AccI GTMKAC 1 cut(s) 417
AciI CCGC 3 cut(s) 6, 309, 824
AcsI RAATTY 2 cut(s) 172, 508
AcuI CTGAAG 2 cut(s) 243, 1295
AcyI GRCGYC 1 cut(s) 756
AfaI GTAC 2 cut(s) 712, 1208
AfiI CCNNNNNNNGG 5 cut(s) 374, 539, 540, 752, 1168
AgsI TTSAA 2 cut(s) 600, 1118
AhlI ACTAGT 1 cut(s) 707
AjiI CACGTC 2 cut(s) 96, 371
AjnI CCWGG 1 cut(s) 1094
AleI CACNNNNGTG 2 cut(s) 400, 1290
AluBI AGCT 5 cut(s) 363, 461, 1183, 1253, 1264
AluI AGCT 5 cut(s) 363, 461, 1183, 1253, 1264
Alw21I GWGCWC 2 cut(s) 505, 991
Alw26I GTCTC 1 cut(s) 16
Alw44I GTGCAC 1 cut(s) 987
AlwNI CAGNNNCTG 2 cut(s) 20, 1174
AoxI GGCC 1 cut(s) 1242
ApaI GGGCCC 1 cut(s) 1246
ApaLI GTGCAC 1 cut(s) 987
ApeKI GCWGC 1 cut(s) 1079
ApoI RAATTY 2 cut(s) 172, 508
AspLEI GCGC 1 cut(s) 758
AspS9I GGNCC 3 cut(s) 1019, 1242, 1243
AsuC2I CCSGG 1 cut(s) 761
AsuHPI GGTGA 1 cut(s) 376
AsuNHI GCTAGC 1 cut(s) 701
AvaII GGWCC 1 cut(s) 1019
AxyI CCTNAGG 1 cut(s) 100
BaeGI GKGCMC 3 cut(s) 615, 991, 1246
BanI GGYRCC 2 cut(s) 610, 755
BanII GRGCYC 1 cut(s) 1246
BbsI GAAGAC 2 cut(s) 112, 416
Bbv12I GWGCWC 2 cut(s) 505, 991
BbvI GCAGC 1 cut(s) 1066
BccI CCATC 7 cut(s) 125, 245, 491, 670, 892, 923, 1010
BceAI ACGGC 2 cut(s) 52, 181
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 1 cut(s) 1096
BcnI CCSGG 1 cut(s) 761
BcoDI GTCTC 1 cut(s) 16
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 3 cut(s) 702, 708, 1089
BfoI RGCGCY 1 cut(s) 759
BisI GCNGC 1 cut(s) 1080
BlpI GCTNAGC 2 cut(s) 462, 1179
BlsI GCNGC 1 cut(s) 1081
BmcAI AGTACT 2 cut(s) 712, 1208
Bme1390I CCNGG 2 cut(s) 761, 1096
Bme18I GGWCC 1 cut(s) 1019
BmgBI CACGTC 2 cut(s) 96, 371
BmgT120I GGNCC 3 cut(s) 1019, 1242, 1243
BmiI GGNNCC 4 cut(s) 591, 612, 757, 1244
BmrFI CCNGG 2 cut(s) 761, 1096
BmsI GCATC 1 cut(s) 1260
BmtI GCTAGC 1 cut(s) 705
BpiI GAAGAC 2 cut(s) 112, 416
BpmI CTGGAG 1 cut(s) 575
Bpu1102I GCTNAGC 2 cut(s) 462, 1179
BpuEI CTTGAG 2 cut(s) 732, 1205
BpuMI CCSGG 1 cut(s) 761
BsaHI GRCGYC 1 cut(s) 756
BsaJI CCNNGG 2 cut(s) 34, 759
BsaXI ACNNNNNCTCC 5 cut(s) 837, 867, 1250, 1273, 1280
Bsc4I CCNNNNNNNGG 5 cut(s) 374, 539, 540, 752, 1168
Bse118I RCCGGY 1 cut(s) 695
Bse1I ACTGG 5 cut(s) 53, 558, 917, 1022, 1179
Bse21I CCTNAGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 499
BseBI CCWGG 1 cut(s) 1096
BseDI CCNNGG 2 cut(s) 34, 759
BseGI GGATG 4 cut(s) 903, 939, 1062, 1275
BseLI CCNNNNNNNGG 5 cut(s) 374, 539, 540, 752, 1168
BseMI GCAATG 1 cut(s) 499
BseMII CTCAG 7 cut(s) 27, 150, 476, 518, 972, 983, 1170
BseNI ACTGG 5 cut(s) 53, 558, 917, 1022, 1179
BseRI GAGGAG 3 cut(s) 612, 1057, 1294
BseSI GKGCMC 3 cut(s) 615, 991, 1246
BseXI GCAGC 1 cut(s) 1066
BsgI GTGCAG 3 cut(s) 77, 378, 424
Bsh1285I CGRYCG 1 cut(s) 765
BshFI GGCC 1 cut(s) 1244
BshNI GGYRCC 2 cut(s) 610, 755
BsiEI CGRYCG 1 cut(s) 765
BsiHKAI GWGCWC 2 cut(s) 505, 991
BsiSI CCGG 2 cut(s) 696, 761
BslFI GGGAC 2 cut(s) 16, 675
BslI CCNNNNNNNGG 5 cut(s) 374, 539, 540, 752, 1168
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 16, 675
BsmI GAATGC 1 cut(s) 1159
BsnI GGCC 1 cut(s) 1244
Bsp120I GGGCCC 1 cut(s) 1242
Bsp1286I GDGCHC 4 cut(s) 505, 615, 991, 1246
Bsp1720I GCTNAGC 2 cut(s) 462, 1179
BspACI CCGC 3 cut(s) 6, 309, 824
BspANI GGCC 1 cut(s) 1244
BspCNI CTCAG 7 cut(s) 26, 151, 475, 517, 971, 984, 1171
BspLI GGNNCC 4 cut(s) 591, 612, 757, 1244
BspOI GCTAGC 1 cut(s) 705
BspT107I GGYRCC 2 cut(s) 610, 755
BsrDI GCAATG 1 cut(s) 499
BsrFI RCCGGY 1 cut(s) 695
BsrI ACTGG 5 cut(s) 53, 558, 917, 1022, 1179
BssAI RCCGGY 1 cut(s) 695
BssECI CCNNGG 2 cut(s) 34, 759
BssNI GRCGYC 1 cut(s) 756
Bst2UI CCWGG 1 cut(s) 1096
Bst4CI ACNGT 7 cut(s) 263, 415, 476, 1114, 1206, 1211, 1289
Bst6I CTCTTC 2 cut(s) 1143, 1271
BstACI GRCGYC 1 cut(s) 756
BstC8I GCNNGC 3 cut(s) 365, 530, 703
BstDEI CTNAG 8 cut(s) 13, 100, 159, 462, 504, 958, 992, 1179
BstDSI CCRYGG 1 cut(s) 34
BstENI CCTNNNNNAGG 1 cut(s) 1166
BstF5I GGATG 4 cut(s) 903, 939, 1062, 1275
BstH2I RGCGCY 1 cut(s) 759
BstHHI GCGC 1 cut(s) 758
BstMAI GTCTC 1 cut(s) 16
BstMCI CGRYCG 1 cut(s) 765
BstMWI GCNNNNNNNGC 4 cut(s) 445, 643, 1250, 1270
BstNI CCWGG 1 cut(s) 1096
BstSCI CCNGG 2 cut(s) 759, 1094
BstSLI GKGCMC 3 cut(s) 615, 991, 1246
BstV1I GCAGC 1 cut(s) 1066
BstV2I GAAGAC 2 cut(s) 112, 416
Bsu36I CCTNAGG 1 cut(s) 100
BsuRI GGCC 1 cut(s) 1244
BtgI CCRYGG 1 cut(s) 34
BtrI CACGTC 2 cut(s) 96, 371
BtsCI GGATG 4 cut(s) 903, 939, 1062, 1275
BtsIMutI CAGTG 7 cut(s) 60, 551, 612, 924, 989, 1029, 1172
Cac8I GCNNGC 3 cut(s) 365, 530, 703
CaiI CAGNNNCTG 2 cut(s) 20, 1174
CfoI GCGC 1 cut(s) 758
Cfr10I RCCGGY 1 cut(s) 695
Cfr13I GGNCC 3 cut(s) 1019, 1242, 1243
Csp6I GTAC 2 cut(s) 711, 1207
CspCI CAANNNNNGTGG 2 cut(s) 588, 623
CviAII CATG 1 cut(s) 190
CviQI GTAC 2 cut(s) 711, 1207
DdeI CTNAG 8 cut(s) 13, 100, 159, 462, 504, 958, 992, 1179
DinI GGCGCC 1 cut(s) 757
Eam1104I CTCTTC 2 cut(s) 1143, 1271
EarI CTCTTC 2 cut(s) 1143, 1271
Eco24I GRGCYC 1 cut(s) 1246
Eco47I GGWCC 1 cut(s) 1019
Eco57I CTGAAG 2 cut(s) 243, 1295
Eco81I CCTNAGG 1 cut(s) 100
EcoNI CCTNNNNNAGG 1 cut(s) 1166
EcoO109I RGGNCCY 1 cut(s) 1242
EcoRI GAATTC 1 cut(s) 508
EcoRII CCWGG 1 cut(s) 1094
EcoT38I GRGCYC 1 cut(s) 1246
EgeI GGCGCC 1 cut(s) 757
EheI GGCGCC 1 cut(s) 757
FaeI CATG 1 cut(s) 193
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FaqI GGGAC 2 cut(s) 16, 675
FatI CATG 1 cut(s) 189
FauI CCCGC 1 cut(s) 316
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 1 cut(s) 1080
FokI GGATG 4 cut(s) 910, 946, 1069, 1282
FriOI GRGCYC 1 cut(s) 1246
Fsp4HI GCNGC 1 cut(s) 1080
FspBI CTAG 3 cut(s) 702, 708, 1089
GlaI GCGC 1 cut(s) 757
GluI GCNGC 1 cut(s) 1080
GsuI CTGGAG 1 cut(s) 575
HaeII RGCGCY 1 cut(s) 759
HaeIII GGCC 1 cut(s) 1244
HapII CCGG 2 cut(s) 696, 761
HhaI GCGC 1 cut(s) 758
Hin1I GRCGYC 1 cut(s) 756
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 1 cut(s) 756
HinP1I GCGC 1 cut(s) 756
HindIII AAGCTT 1 cut(s) 361
HinfI GANTC 7 cut(s) 17, 596, 770, 913, 943, 1073, 1282
HpaII CCGG 2 cut(s) 696, 761
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 3 cut(s) 380, 418, 989
Hpy188III TCNNGA 4 cut(s) 134, 587, 895, 1089
Hpy8I GTNNAC 3 cut(s) 380, 418, 989
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 4 cut(s) 163, 398, 1024, 1047
HpyCH4III ACNGT 7 cut(s) 263, 415, 476, 1114, 1206, 1211, 1289
HpyCH4IV ACGT 2 cut(s) 95, 370
HpyCH4V TGCA 8 cut(s) 58, 395, 405, 439, 689, 989, 1082, 1157
HpyF10VI GCNNNNNNNGC 4 cut(s) 445, 643, 1250, 1270
HpyF3I CTNAG 8 cut(s) 13, 100, 159, 462, 504, 958, 992, 1179
HpySE526I ACGT 2 cut(s) 95, 370
Hsp92I GRCGYC 1 cut(s) 756
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 1 cut(s) 756
KasI GGCGCC 1 cut(s) 755
Lsp1109I GCAGC 1 cut(s) 1066
LweI GCATC 1 cut(s) 1260
MaeI CTAG 3 cut(s) 702, 708, 1089
MaeII ACGT 2 cut(s) 95, 370
MaeIII GTNAC 4 cut(s) 322, 476, 784, 1283
MboII GAAGA 7 cut(s) 105, 117, 236, 421, 1011, 1160, 1288
MhlI GDGCHC 4 cut(s) 505, 615, 991, 1246
MluCI AATT 6 cut(s) 47, 172, 508, 730, 1118, 1139
Mly113I GGCGCC 1 cut(s) 756
MlyI GAGTC 6 cut(s) 26, 779, 922, 952, 1082, 1291
MmeI TCCRAC 1 cut(s) 745
MseI TTAA 4 cut(s) 314, 1062, 1142, 1164
MslI CAYNNNNRTG 2 cut(s) 400, 1290
MspI CCGG 2 cut(s) 696, 761
MspR9I CCNGG 2 cut(s) 761, 1096
Mva1269I GAATGC 1 cut(s) 1159
MvaI CCWGG 1 cut(s) 1096
MwoI GCNNNNNNNGC 4 cut(s) 445, 643, 1250, 1270
NarI GGCGCC 1 cut(s) 756
NciI CCSGG 1 cut(s) 761
NheI GCTAGC 1 cut(s) 701
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 4 cut(s) 591, 612, 757, 1244
NmuCI GTSAC 2 cut(s) 322, 1283
OliI CACNNNNGTG 2 cut(s) 400, 1290
PctI GAATGC 1 cut(s) 1159
PfeI GAWTC 1 cut(s) 596
PkrI GCNGC 1 cut(s) 1081
PleI GAGTC 6 cut(s) 25, 778, 921, 951, 1081, 1290
PluTI GGCGCC 1 cut(s) 759
PpsI GAGTC 6 cut(s) 25, 778, 921, 951, 1081, 1290
Psp6I CCWGG 1 cut(s) 1094
PspGI CCWGG 1 cut(s) 1094
PspN4I GGNNCC 4 cut(s) 591, 612, 757, 1244
PspOMI GGGCCC 1 cut(s) 1242
PspPI GGNCC 3 cut(s) 1019, 1242, 1243
PstNI CAGNNNCTG 2 cut(s) 20, 1174
RsaI GTAC 2 cut(s) 712, 1208
RsaNI GTAC 2 cut(s) 711, 1207
RseI CAYNNNNRTG 2 cut(s) 400, 1290
SaqAI TTAA 4 cut(s) 314, 1062, 1142, 1164
SatI GCNGC 1 cut(s) 1080
Sau96I GGNCC 3 cut(s) 1019, 1242, 1243
ScaI AGTACT 2 cut(s) 712, 1208
SchI GAGTC 6 cut(s) 26, 779, 922, 952, 1082, 1291
ScrFI CCNGG 2 cut(s) 761, 1096
SduI GDGCHC 4 cut(s) 505, 615, 991, 1246
SfaNI GCATC 1 cut(s) 1260
SfoI GGCGCC 1 cut(s) 757
SinI GGWCC 1 cut(s) 1019
SmiMI CAYNNNNRTG 2 cut(s) 400, 1290
SmlI CTYRAG 2 cut(s) 747, 1184
SmoI CTYRAG 2 cut(s) 747, 1184
SpeI ACTAGT 1 cut(s) 707
Sse9I AATT 6 cut(s) 47, 172, 508, 730, 1118, 1139
SsiI CCGC 3 cut(s) 6, 309, 824
SspDI GGCGCC 1 cut(s) 755
SspMI CTAG 3 cut(s) 702, 708, 1089
StyD4I CCNGG 2 cut(s) 759, 1094
TaaI ACNGT 7 cut(s) 263, 415, 476, 1114, 1206, 1211, 1289
TaiI ACGT 2 cut(s) 98, 373
TaqI TCGA 1 cut(s) 135
TasI AATT 6 cut(s) 47, 172, 508, 730, 1118, 1139
TatI WGTACW 2 cut(s) 710, 1206
TfiI GAWTC 1 cut(s) 596
Tru1I TTAA 4 cut(s) 314, 1062, 1142, 1164
Tru9I TTAA 4 cut(s) 314, 1062, 1142, 1164
TscAI CASTG 7 cut(s) 60, 558, 612, 924, 996, 1029, 1179
TseFI GTSAC 2 cut(s) 322, 1283
TseI GCWGC 1 cut(s) 1079
Tsp45I GTSAC 2 cut(s) 322, 1283
TspDTI ATGAA 2 cut(s) 200, 1205
TspRI CASTG 7 cut(s) 60, 558, 612, 924, 996, 1029, 1179
VneI GTGCAC 1 cut(s) 987
VpaK11BI GGWCC 1 cut(s) 1019
XagI CCTNNNNNAGG 1 cut(s) 1166
XapI RAATTY 2 cut(s) 172, 508
XbaI TCTAGA 1 cut(s) 1088
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 417
XspI CTAG 3 cut(s) 702, 708, 1089
ZrmI AGTACT 2 cut(s) 712, 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.