RLG00000024031
BZIP Family

Protein ABSCISIC ACID-INSENSITIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006875
Physical Location & Seq
Reverse (-)
30979172 .. 30980864
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024031

Sequence Viewer

Length: 1314 bp
ATGGGCGGTGTCTCAGAGTCTGAAATGATGTCCCACGGCAAAGAGGAATTGCCATTGCAGTCTGACCAACATGCCAAGAACAACCAACTATTCACGTCCTTAGGAAGACAATCTTCCATCTACGCTCTCACTCTCGACGAGTTCCAGCACTCCCTCTCTGAGAACGGCAAGAATTTCGGGTCTATGAACATGGACGAGTTCCTCAACAGCATTTGGACTGCTGAAGAAAATCAAGCCATCAATTCCACCCACCACAACAACAGTAATAACCTCAATCCCAACCACATCAACAACATAAGCAACAACAATGTCCAGCACCCCGCTTTGAGCGAGATCACTATGGAAAAAAAAGGTATGATAGCCAAGCAACCAAGCTTGGCACGTCAGGGTTCACTCACGCTTCCTGCACCATTGTGCAGGAAGACGGTGGACGAAGTGTGGTCTGAAATACACAAAGGGCAGAAAGCAGAAGCTCAGCAACAGAACAATAACCACAACAATAGCAATGATGGTGCTCAGAATTCCGAGTATGTTCCTCGCCAGCCCACATTTGGGGAGATGACACTGGAGGATTTTTTAGTAAAAGCAGGGGTAGTTCGGGAACCAGATTCAATTTCAGTGGTGCCCCTCCCTCCTCAACCCCAACAGCAACCACAGCAGTATGGCATAGTGGGACAAAGTTTTGTGATGGGAATGGGTGCAAATGTTGGCGCTAGCACTAGTACTACTCCTGTTTTGCCCAATTACCAAACTATCCCTCAAGGTGGCGCCCCGGTTGGAGAGTCATCAGGGTATGTTACAAATGGCAAGAGGAATGGGGCATACGCCCCACCACCGCCACAGGCAGTTTGTTTTGGAGGGCAAGTGGTCAATGGTGGAGGTGGTTATGCCCCGACACAGCCAATCGGGATGGCTACTTCTGTGAGTCCAGTGTCATCAGATGGGATGTGTGCGAGTCAGATTGAGAACTCAGGGGGTCAATATGCTATGGATATGGGTGCACTGAGGGGAAGAAAGAGGATTATAGATGGTCCAGTGGAGAAGGTGGTGGAGAGGAGGCAGAGAAGGATGATTAAGAATAGAGAGTCTGCTGCAAGGTCTAGAGCCAGGAAACAGGCATATACTGTTGAATTGGAGGCAGAACTGAACCAATTAAGAGAAGAGAATGCAAACCTTAAAAAGGCACTGGCTGAGCTTGAGATGAAACGAAAGCAACAGTACTGTGAGGAAATGAGAAAAAGAGTTCAGAGCAGGGCCCAGAAAGCTGTGGAGAAGCTGTGGATGCTGAAGAGGAGTCACAGTTGTGCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010152 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

438

Amino Acids

47.97

Weight (kDa)

8.46

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 351 - 401 3.4e-09 Basic region leucine zipper
bZIP_1 PF00170 352 - 400 3.4e-12 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 622, 767
AciI CCGC 3 cut(s) 6, 321, 836
AcsI RAATTY 2 cut(s) 172, 520
AcuI CTGAAG 2 cut(s) 243, 1307
AcyI GRCGYC 1 cut(s) 768
AfaI GTAC 2 cut(s) 724, 1220
AfiI CCNNNNNNNGG 4 cut(s) 551, 552, 764, 1180
AgsI TTSAA 2 cut(s) 612, 1130
AhlI ACTAGT 1 cut(s) 719
AjiI CACGTC 2 cut(s) 96, 383
AjnI CCWGG 1 cut(s) 1106
AleI CACNNNNGTG 2 cut(s) 412, 1302
AluBI AGCT 5 cut(s) 375, 473, 1195, 1265, 1276
AluI AGCT 5 cut(s) 375, 473, 1195, 1265, 1276
Alw21I GWGCWC 2 cut(s) 517, 1003
Alw26I GTCTC 1 cut(s) 16
Alw44I GTGCAC 1 cut(s) 999
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 1 cut(s) 1254
ApaI GGGCCC 1 cut(s) 1258
ApaLI GTGCAC 1 cut(s) 999
ApeKI GCWGC 1 cut(s) 1091
ApoI RAATTY 2 cut(s) 172, 520
AspLEI GCGC 2 cut(s) 713, 770
AspS9I GGNCC 3 cut(s) 1031, 1254, 1255
AsuC2I CCSGG 1 cut(s) 773
AsuNHI GCTAGC 1 cut(s) 713
AvaII GGWCC 1 cut(s) 1031
AxyI CCTNAGG 1 cut(s) 100
BaeGI GKGCMC 3 cut(s) 627, 1003, 1258
BanI GGYRCC 2 cut(s) 622, 767
BanII GRGCYC 1 cut(s) 1258
BbsI GAAGAC 2 cut(s) 112, 428
Bbv12I GWGCWC 2 cut(s) 517, 1003
BbvI GCAGC 1 cut(s) 1078
BccI CCATC 7 cut(s) 125, 245, 503, 682, 904, 935, 1022
BceAI ACGGC 2 cut(s) 52, 181
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 1 cut(s) 1108
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 1 cut(s) 16
BcuI ACTAGT 1 cut(s) 719
BfaI CTAG 3 cut(s) 714, 720, 1101
BfoI RGCGCY 2 cut(s) 714, 771
BisI GCNGC 1 cut(s) 1092
BlpI GCTNAGC 2 cut(s) 474, 1191
BlsI GCNGC 1 cut(s) 1093
BmcAI AGTACT 2 cut(s) 724, 1220
Bme1390I CCNGG 2 cut(s) 773, 1108
Bme18I GGWCC 1 cut(s) 1031
BmgBI CACGTC 2 cut(s) 96, 383
BmgT120I GGNCC 3 cut(s) 1031, 1254, 1255
BmiI GGNNCC 4 cut(s) 603, 624, 769, 1256
BmrFI CCNGG 2 cut(s) 773, 1108
BmsI GCATC 1 cut(s) 1272
BmtI GCTAGC 1 cut(s) 717
BpiI GAAGAC 2 cut(s) 112, 428
BpmI CTGGAG 1 cut(s) 587
Bpu1102I GCTNAGC 2 cut(s) 474, 1191
BpuEI CTTGAG 2 cut(s) 744, 1217
BpuMI CCSGG 1 cut(s) 773
BsaHI GRCGYC 1 cut(s) 768
BsaJI CCNNGG 2 cut(s) 34, 771
BsaXI ACNNNNNCTCC 5 cut(s) 849, 879, 1262, 1285, 1292
Bsc4I CCNNNNNNNGG 4 cut(s) 551, 552, 764, 1180
Bse1I ACTGG 4 cut(s) 570, 929, 1034, 1191
Bse21I CCTNAGG 1 cut(s) 100
Bse3DI GCAATG 2 cut(s) 53, 511
BseBI CCWGG 1 cut(s) 1108
BseDI CCNNGG 2 cut(s) 34, 771
BseGI GGATG 4 cut(s) 915, 951, 1074, 1287
BseLI CCNNNNNNNGG 4 cut(s) 551, 552, 764, 1180
BseMI GCAATG 2 cut(s) 53, 511
BseMII CTCAG 7 cut(s) 27, 150, 488, 530, 984, 995, 1182
BseNI ACTGG 4 cut(s) 570, 929, 1034, 1191
BseRI GAGGAG 3 cut(s) 624, 1069, 1306
BseSI GKGCMC 3 cut(s) 627, 1003, 1258
BseXI GCAGC 1 cut(s) 1078
BsgI GTGCAG 2 cut(s) 390, 436
BshFI GGCC 1 cut(s) 1256
BshNI GGYRCC 2 cut(s) 622, 767
BsiHKAI GWGCWC 2 cut(s) 517, 1003
BsiSI CCGG 1 cut(s) 773
BslFI GGGAC 2 cut(s) 16, 687
BslI CCNNNNNNNGG 4 cut(s) 551, 552, 764, 1180
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 16, 687
BsmI GAATGC 1 cut(s) 1171
BsnI GGCC 1 cut(s) 1256
Bsp120I GGGCCC 1 cut(s) 1254
Bsp1286I GDGCHC 4 cut(s) 517, 627, 1003, 1258
Bsp143I GATC 1 cut(s) 333
Bsp1720I GCTNAGC 2 cut(s) 474, 1191
BspACI CCGC 3 cut(s) 6, 321, 836
BspANI GGCC 1 cut(s) 1256
BspCNI CTCAG 7 cut(s) 26, 151, 487, 529, 983, 996, 1183
BspLI GGNNCC 4 cut(s) 603, 624, 769, 1256
BspOI GCTAGC 1 cut(s) 717
BspT107I GGYRCC 2 cut(s) 622, 767
BsrDI GCAATG 2 cut(s) 53, 511
BsrI ACTGG 4 cut(s) 570, 929, 1034, 1191
BssECI CCNNGG 2 cut(s) 34, 771
BssMI GATC 1 cut(s) 333
BssNI GRCGYC 1 cut(s) 768
Bst2UI CCWGG 1 cut(s) 1108
Bst4CI ACNGT 6 cut(s) 263, 427, 1126, 1218, 1223, 1301
Bst6I CTCTTC 2 cut(s) 1155, 1283
BstACI GRCGYC 1 cut(s) 768
BstC8I GCNNGC 2 cut(s) 542, 715
BstDEI CTNAG 8 cut(s) 13, 100, 159, 474, 516, 970, 1004, 1191
BstDSI CCRYGG 1 cut(s) 34
BstENI CCTNNNNNAGG 1 cut(s) 1178
BstF5I GGATG 4 cut(s) 915, 951, 1074, 1287
BstH2I RGCGCY 2 cut(s) 714, 771
BstHHI GCGC 2 cut(s) 713, 770
BstKTI GATC 1 cut(s) 336
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 1 cut(s) 333
BstMWI GCNNNNNNNGC 3 cut(s) 655, 1262, 1282
BstNI CCWGG 1 cut(s) 1108
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 2 cut(s) 771, 1106
BstSLI GKGCMC 3 cut(s) 627, 1003, 1258
BstV1I GCAGC 1 cut(s) 1078
BstV2I GAAGAC 2 cut(s) 112, 428
Bsu36I CCTNAGG 1 cut(s) 100
BsuRI GGCC 1 cut(s) 1256
BtgI CCRYGG 1 cut(s) 34
BtrI CACGTC 2 cut(s) 96, 383
BtsCI GGATG 4 cut(s) 915, 951, 1074, 1287
BtsIMutI CAGTG 6 cut(s) 563, 624, 936, 1001, 1041, 1184
Cac8I GCNNGC 2 cut(s) 542, 715
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 2 cut(s) 713, 770
Cfr13I GGNCC 3 cut(s) 1031, 1254, 1255
Csp6I GTAC 2 cut(s) 723, 1219
CspCI CAANNNNNGTGG 2 cut(s) 600, 635
CviAII CATG 2 cut(s) 71, 190
CviQI GTAC 2 cut(s) 723, 1219
DdeI CTNAG 8 cut(s) 13, 100, 159, 474, 516, 970, 1004, 1191
DinI GGCGCC 1 cut(s) 769
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
Eam1104I CTCTTC 2 cut(s) 1155, 1283
EarI CTCTTC 2 cut(s) 1155, 1283
Eco24I GRGCYC 1 cut(s) 1258
Eco47I GGWCC 1 cut(s) 1031
Eco57I CTGAAG 2 cut(s) 243, 1307
Eco81I CCTNAGG 1 cut(s) 100
EcoNI CCTNNNNNAGG 1 cut(s) 1178
EcoO109I RGGNCCY 1 cut(s) 1254
EcoRI GAATTC 1 cut(s) 520
EcoRII CCWGG 1 cut(s) 1106
EcoT38I GRGCYC 1 cut(s) 1258
EgeI GGCGCC 1 cut(s) 769
EheI GGCGCC 1 cut(s) 769
FaeI CATG 2 cut(s) 74, 193
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FaqI GGGAC 2 cut(s) 16, 687
FatI CATG 2 cut(s) 70, 189
FauI CCCGC 1 cut(s) 328
Fnu4HI GCNGC 1 cut(s) 1092
FokI GGATG 4 cut(s) 922, 958, 1081, 1294
FriOI GRGCYC 1 cut(s) 1258
Fsp4HI GCNGC 1 cut(s) 1092
FspBI CTAG 3 cut(s) 714, 720, 1101
GlaI GCGC 2 cut(s) 712, 769
GluI GCNGC 1 cut(s) 1092
GsuI CTGGAG 1 cut(s) 587
HaeII RGCGCY 2 cut(s) 714, 771
HaeIII GGCC 1 cut(s) 1256
HapII CCGG 1 cut(s) 773
HhaI GCGC 2 cut(s) 713, 770
Hin1I GRCGYC 1 cut(s) 768
Hin1II CATG 2 cut(s) 74, 193
Hin6I GCGC 2 cut(s) 711, 768
HinP1I GCGC 2 cut(s) 711, 768
HindIII AAGCTT 1 cut(s) 373
HinfI GANTC 7 cut(s) 17, 608, 782, 925, 955, 1085, 1294
HpaII CCGG 1 cut(s) 773
Hpy166II GTNNAC 3 cut(s) 392, 430, 1001
Hpy188III TCNNGA 4 cut(s) 134, 599, 907, 1101
Hpy8I GTNNAC 3 cut(s) 392, 430, 1001
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 1036, 1059
HpyCH4III ACNGT 6 cut(s) 263, 427, 1126, 1218, 1223, 1301
HpyCH4IV ACGT 2 cut(s) 95, 382
HpyCH4V TGCA 7 cut(s) 58, 407, 417, 701, 1001, 1094, 1169
HpyF10VI GCNNNNNNNGC 3 cut(s) 655, 1262, 1282
HpyF3I CTNAG 8 cut(s) 13, 100, 159, 474, 516, 970, 1004, 1191
HpySE526I ACGT 2 cut(s) 95, 382
Hsp92I GRCGYC 1 cut(s) 768
Hsp92II CATG 2 cut(s) 74, 193
HspAI GCGC 2 cut(s) 711, 768
KasI GGCGCC 1 cut(s) 767
Kzo9I GATC 1 cut(s) 333
Lsp1109I GCAGC 1 cut(s) 1078
LweI GCATC 1 cut(s) 1272
MaeI CTAG 3 cut(s) 714, 720, 1101
MaeII ACGT 2 cut(s) 95, 382
MaeIII GTNAC 2 cut(s) 796, 1295
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MboII GAAGA 7 cut(s) 105, 117, 236, 433, 1023, 1172, 1300
MhlI GDGCHC 4 cut(s) 517, 627, 1003, 1258
MluCI AATT 8 cut(s) 47, 172, 241, 520, 612, 742, 1130, 1151
Mly113I GGCGCC 1 cut(s) 768
MlyI GAGTC 6 cut(s) 26, 791, 934, 964, 1094, 1303
MmeI TCCRAC 1 cut(s) 757
MseI TTAA 3 cut(s) 1074, 1154, 1176
MslI CAYNNNNRTG 2 cut(s) 412, 1302
MspI CCGG 1 cut(s) 773
MspR9I CCNGG 2 cut(s) 773, 1108
Mva1269I GAATGC 1 cut(s) 1171
MvaI CCWGG 1 cut(s) 1108
MwoI GCNNNNNNNGC 3 cut(s) 655, 1262, 1282
NarI GGCGCC 1 cut(s) 768
NciI CCSGG 1 cut(s) 773
NdeII GATC 1 cut(s) 333
NheI GCTAGC 1 cut(s) 713
NlaIII CATG 2 cut(s) 74, 193
NlaIV GGNNCC 4 cut(s) 603, 624, 769, 1256
NmuCI GTSAC 1 cut(s) 1295
NspI RCATGY 1 cut(s) 74
OliI CACNNNNGTG 2 cut(s) 412, 1302
PctI GAATGC 1 cut(s) 1171
PfeI GAWTC 1 cut(s) 608
PkrI GCNGC 1 cut(s) 1093
PleI GAGTC 6 cut(s) 25, 790, 933, 963, 1093, 1302
PluTI GGCGCC 1 cut(s) 771
PpsI GAGTC 6 cut(s) 25, 790, 933, 963, 1093, 1302
Psp6I CCWGG 1 cut(s) 1106
PspGI CCWGG 1 cut(s) 1106
PspN4I GGNNCC 4 cut(s) 603, 624, 769, 1256
PspOMI GGGCCC 1 cut(s) 1254
PspPI GGNCC 3 cut(s) 1031, 1254, 1255
PstNI CAGNNNCTG 1 cut(s) 20
RsaI GTAC 2 cut(s) 724, 1220
RsaNI GTAC 2 cut(s) 723, 1219
RseI CAYNNNNRTG 2 cut(s) 412, 1302
SaqAI TTAA 3 cut(s) 1074, 1154, 1176
SatI GCNGC 1 cut(s) 1092
Sau3AI GATC 1 cut(s) 333
Sau96I GGNCC 3 cut(s) 1031, 1254, 1255
ScaI AGTACT 2 cut(s) 724, 1220
SchI GAGTC 6 cut(s) 26, 791, 934, 964, 1094, 1303
ScrFI CCNGG 2 cut(s) 773, 1108
SduI GDGCHC 4 cut(s) 517, 627, 1003, 1258
SfaNI GCATC 1 cut(s) 1272
SfoI GGCGCC 1 cut(s) 769
SinI GGWCC 1 cut(s) 1031
SmiMI CAYNNNNRTG 2 cut(s) 412, 1302
SmlI CTYRAG 2 cut(s) 759, 1196
SmoI CTYRAG 2 cut(s) 759, 1196
SpeI ACTAGT 1 cut(s) 719
Sse9I AATT 8 cut(s) 47, 172, 241, 520, 612, 742, 1130, 1151
SsiI CCGC 3 cut(s) 6, 321, 836
SspDI GGCGCC 1 cut(s) 767
SspMI CTAG 3 cut(s) 714, 720, 1101
StyD4I CCNGG 2 cut(s) 771, 1106
TaaI ACNGT 6 cut(s) 263, 427, 1126, 1218, 1223, 1301
TaiI ACGT 2 cut(s) 98, 385
TaqI TCGA 1 cut(s) 135
TasI AATT 8 cut(s) 47, 172, 241, 520, 612, 742, 1130, 1151
TatI WGTACW 2 cut(s) 722, 1218
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 3 cut(s) 1074, 1154, 1176
Tru9I TTAA 3 cut(s) 1074, 1154, 1176
TscAI CASTG 6 cut(s) 570, 624, 936, 1008, 1041, 1191
TseFI GTSAC 1 cut(s) 1295
TseI GCWGC 1 cut(s) 1091
Tsp45I GTSAC 1 cut(s) 1295
TspDTI ATGAA 2 cut(s) 200, 1217
TspRI CASTG 6 cut(s) 570, 624, 936, 1008, 1041, 1191
VneI GTGCAC 1 cut(s) 999
VpaK11BI GGWCC 1 cut(s) 1031
XagI CCTNNNNNAGG 1 cut(s) 1178
XapI RAATTY 2 cut(s) 172, 520
XbaI TCTAGA 1 cut(s) 1100
XceI RCATGY 1 cut(s) 74
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XspI CTAG 3 cut(s) 714, 720, 1101
ZrmI AGTACT 2 cut(s) 724, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.