RchiOBHm_Chr3g0473071
BZIP Family

Protein ABSCISIC ACID-INSENSITIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006875
Physical Location & Seq
Forward (+)
19069549 .. 19071587
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43875

Sequence Viewer

Length: 1329 bp
ATGACAAACACAACAATGGGCGGTGTCTCAGAGTCTGAAATGATGTCCCACGGCAAAGAGGAATTGCCAGGGCAGTCTGACCAATATGCCAAGAACAACCAACTATTCACGTCCTTAGGAAGACAATCTTCCATCTACTCTCTCACTCTCGACGAGTTCCAGCACACCCTCTCTGAGAACGGCAAGAATTTCGGGTCTATGAACATGGACGAGTTCCTCAACAGCATTTGGACTGCTGAAGAAAATCAAGCCATCAACTCCACCCACCACAACAACAGTAATAACCTCAATCCCAACCACATCAACAACATAAGCAACAACAATGTCCAGCACCCCGCCTTAAGCGAGATCACTATGGAAAAAGAAGGTGTGATAGCCAAGCAACCAAGCTTGCCACGTCAGGGTTCACTCACCCTTCCTGCACCATTGTGCAGGAAGACGGTGGACGAAGTTTGGTCTGAAATGCACAAAGAGCAGAAAGCACAAGCTCAGCAACAGAACAGTAACCACAACAATAGCAATGATGGTGCTCAGAATTCCGAGTATGTTCCTCGCCAGCCCACATTTGGGGAGATGACACTGGAGGATTTTTTAGTAAAAGCTGGGGTAGTTCGGGAACCAGATTCAATGTCAGTGGTGCCCCTCCCTCCTCAACCCCAACAGCAACCACAGCAGTATGGCATAGTGGGACAAAGTTTTGTGATGGGAATGGGTGCAAATGCCGGTGCTAGCACTAGTACTACTCCTGTTCTGCCCAATTACCAAACTATCCCTCAAGGTGGCGCCCCGGTCGGAGAGTCATCTGGGTATGTTACAAATGGCAAGAGGAATGGGGCATACCCCCCACCACCGCCACAGGCAGTTTGTTTTGGAGGGAGAGTGGTCAATGGTGGAGGTGGTTATGCCCCGACACAGCCAATCGGGATGGCTACTTCTGTGAGTCCAGTGTCATCAGATGGGATGTGTGCGAGTCAGATTGAGAACTCAGGGGGTCAATATGCTATGGATATGGGTGCACTGAGGGGAAGAAAGAGGATTATAGATGGTCCAGTGGAGAAGGTGGTGGAGAGGAGGCAGAGAAGGATGATTAAGAATAGAGAGTCTGCTGCAAGGTCTAGAGCCAGGAAACAGGCATATACTGTTGAATTGGAGGCAGAACTGAACCAATTAAGAGAAGAGAATGCAAACCTTAAACAGGCACTGGCTGAGCTTGAGATGAAACGAAAGCAACAGTACTGTGAGGAAATGAGAAAAAGAGTTCAGAGCAGGGCCCAGAAAGCTGTGGAGAAGCTGTGGATGCTGAAGAGGAGTCACAGTTGTGCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010152 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

442

Amino Acids

48.62

Weight (kDa)

7.67

Isoelectric Point (pI)

59.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 356 - 406 7.1e-10 Basic region leucine zipper
bZIP_1 PF00170 357 - 405 5.6e-12 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 637, 782
AciI CCGC 3 cut(s) 21, 336, 851
AcsI RAATTY 2 cut(s) 187, 535
AcuI CTGAAG 2 cut(s) 258, 1322
AcyI GRCGYC 1 cut(s) 783
AfaI GTAC 2 cut(s) 739, 1235
AfiI CCNNNNNNNGG 5 cut(s) 401, 566, 567, 779, 1195
AflII CTTAAG 1 cut(s) 340
AgsI TTSAA 2 cut(s) 627, 1145
AhlI ACTAGT 1 cut(s) 734
AjiI CACGTC 2 cut(s) 111, 398
AjnI CCWGG 2 cut(s) 67, 1121
AleI CACNNNNGTG 2 cut(s) 427, 1317
AluBI AGCT 6 cut(s) 390, 488, 602, 1210, 1280, 1291
AluI AGCT 6 cut(s) 390, 488, 602, 1210, 1280, 1291
Alw21I GWGCWC 2 cut(s) 532, 1018
Alw26I GTCTC 1 cut(s) 31
Alw44I GTGCAC 1 cut(s) 1014
AlwNI CAGNNNCTG 2 cut(s) 35, 1201
AoxI GGCC 1 cut(s) 1269
ApaI GGGCCC 1 cut(s) 1273
ApaLI GTGCAC 1 cut(s) 1014
ApeKI GCWGC 1 cut(s) 1106
ApoI RAATTY 2 cut(s) 187, 535
AspLEI GCGC 1 cut(s) 785
AspS9I GGNCC 3 cut(s) 1046, 1269, 1270
AsuC2I CCSGG 1 cut(s) 788
AsuHPI GGTGA 1 cut(s) 403
AsuNHI GCTAGC 1 cut(s) 728
AvaII GGWCC 1 cut(s) 1046
AxyI CCTNAGG 1 cut(s) 115
BaeGI GKGCMC 3 cut(s) 642, 1018, 1273
BanI GGYRCC 2 cut(s) 637, 782
BanII GRGCYC 1 cut(s) 1273
BbsI GAAGAC 2 cut(s) 127, 443
Bbv12I GWGCWC 2 cut(s) 532, 1018
BbvI GCAGC 1 cut(s) 1093
BccI CCATC 7 cut(s) 140, 260, 518, 697, 919, 950, 1037
BceAI ACGGC 2 cut(s) 67, 196
BcgI CGANNNNNNTGC 2 cut(s) 172, 206
BciT130I CCWGG 2 cut(s) 69, 1123
BcnI CCSGG 1 cut(s) 788
BcoDI GTCTC 1 cut(s) 31
BcuI ACTAGT 1 cut(s) 734
BfaI CTAG 3 cut(s) 729, 735, 1116
BfoI RGCGCY 1 cut(s) 786
BfrI CTTAAG 1 cut(s) 340
BisI GCNGC 1 cut(s) 1107
BlpI GCTNAGC 2 cut(s) 489, 1206
BlsI GCNGC 1 cut(s) 1108
BmcAI AGTACT 2 cut(s) 739, 1235
Bme1390I CCNGG 3 cut(s) 69, 788, 1123
Bme18I GGWCC 1 cut(s) 1046
BmgBI CACGTC 2 cut(s) 111, 398
BmgT120I GGNCC 3 cut(s) 1046, 1269, 1270
BmiI GGNNCC 4 cut(s) 618, 639, 784, 1271
BmrFI CCNGG 3 cut(s) 69, 788, 1123
BmsI GCATC 1 cut(s) 1287
BmtI GCTAGC 1 cut(s) 732
BpiI GAAGAC 2 cut(s) 127, 443
BpmI CTGGAG 1 cut(s) 602
Bpu1102I GCTNAGC 2 cut(s) 489, 1206
BpuEI CTTGAG 2 cut(s) 759, 1232
BpuMI CCSGG 1 cut(s) 788
BsaHI GRCGYC 1 cut(s) 783
BsaJI CCNNGG 3 cut(s) 49, 68, 786
BsaXI ACNNNNNCTCC 5 cut(s) 864, 894, 1277, 1300, 1307
Bsc4I CCNNNNNNNGG 5 cut(s) 401, 566, 567, 779, 1195
Bse118I RCCGGY 1 cut(s) 722
Bse1I ACTGG 4 cut(s) 585, 944, 1049, 1206
Bse21I CCTNAGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 526
BseBI CCWGG 2 cut(s) 69, 1123
BseDI CCNNGG 3 cut(s) 49, 68, 786
BseGI GGATG 4 cut(s) 930, 966, 1089, 1302
BseLI CCNNNNNNNGG 5 cut(s) 401, 566, 567, 779, 1195
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 7 cut(s) 42, 165, 503, 545, 999, 1010, 1197
BseNI ACTGG 4 cut(s) 585, 944, 1049, 1206
BseRI GAGGAG 3 cut(s) 639, 1084, 1321
BseSI GKGCMC 3 cut(s) 642, 1018, 1273
BseXI GCAGC 1 cut(s) 1093
BseYI CCCAGC 1 cut(s) 602
BsgI GTGCAG 2 cut(s) 405, 451
Bsh1285I CGRYCG 1 cut(s) 792
BshFI GGCC 1 cut(s) 1271
BshNI GGYRCC 2 cut(s) 637, 782
BsiEI CGRYCG 1 cut(s) 792
BsiHKAI GWGCWC 2 cut(s) 532, 1018
BsiSI CCGG 2 cut(s) 723, 788
BslFI GGGAC 2 cut(s) 31, 702
BslI CCNNNNNNNGG 5 cut(s) 401, 566, 567, 779, 1195
BsmAI GTCTC 1 cut(s) 31
BsmFI GGGAC 2 cut(s) 31, 702
BsmI GAATGC 1 cut(s) 1186
BsnI GGCC 1 cut(s) 1271
Bsp120I GGGCCC 1 cut(s) 1269
Bsp1286I GDGCHC 4 cut(s) 532, 642, 1018, 1273
Bsp143I GATC 1 cut(s) 348
Bsp1720I GCTNAGC 2 cut(s) 489, 1206
BspACI CCGC 3 cut(s) 21, 336, 851
BspANI GGCC 1 cut(s) 1271
BspCNI CTCAG 7 cut(s) 41, 166, 502, 544, 998, 1011, 1198
BspLI GGNNCC 4 cut(s) 618, 639, 784, 1271
BspOI GCTAGC 1 cut(s) 732
BspT107I GGYRCC 2 cut(s) 637, 782
BspTI CTTAAG 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 526
BsrFI RCCGGY 1 cut(s) 722
BsrI ACTGG 4 cut(s) 585, 944, 1049, 1206
BssAI RCCGGY 1 cut(s) 722
BssECI CCNNGG 3 cut(s) 49, 68, 786
BssMI GATC 1 cut(s) 348
BssNI GRCGYC 1 cut(s) 783
Bst2UI CCWGG 2 cut(s) 69, 1123
Bst4CI ACNGT 7 cut(s) 278, 442, 503, 1141, 1233, 1238, 1316
Bst6I CTCTTC 2 cut(s) 1170, 1298
BstACI GRCGYC 1 cut(s) 783
BstAFI CTTAAG 1 cut(s) 340
BstC8I GCNNGC 3 cut(s) 392, 557, 730
BstDEI CTNAG 8 cut(s) 28, 115, 174, 489, 531, 985, 1019, 1206
BstDSI CCRYGG 1 cut(s) 49
BstENI CCTNNNNNAGG 1 cut(s) 1193
BstF5I GGATG 4 cut(s) 930, 966, 1089, 1302
BstH2I RGCGCY 1 cut(s) 786
BstHHI GCGC 1 cut(s) 785
BstKTI GATC 1 cut(s) 351
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 1 cut(s) 348
BstMCI CGRYCG 1 cut(s) 792
BstMWI GCNNNNNNNGC 4 cut(s) 472, 670, 1277, 1297
BstNI CCWGG 2 cut(s) 69, 1123
BstSCI CCNGG 3 cut(s) 67, 786, 1121
BstSLI GKGCMC 3 cut(s) 642, 1018, 1273
BstV1I GCAGC 1 cut(s) 1093
BstV2I GAAGAC 2 cut(s) 127, 443
Bsu36I CCTNAGG 1 cut(s) 115
BsuRI GGCC 1 cut(s) 1271
BtgI CCRYGG 1 cut(s) 49
BtrI CACGTC 2 cut(s) 111, 398
BtsCI GGATG 4 cut(s) 930, 966, 1089, 1302
BtsIMutI CAGTG 6 cut(s) 578, 639, 951, 1016, 1056, 1199
Cac8I GCNNGC 3 cut(s) 392, 557, 730
CaiI CAGNNNCTG 2 cut(s) 35, 1201
CfoI GCGC 1 cut(s) 785
Cfr10I RCCGGY 1 cut(s) 722
Cfr13I GGNCC 3 cut(s) 1046, 1269, 1270
Csp6I GTAC 2 cut(s) 738, 1234
CspCI CAANNNNNGTGG 2 cut(s) 615, 650
CviAII CATG 1 cut(s) 205
CviQI GTAC 2 cut(s) 738, 1234
DdeI CTNAG 8 cut(s) 28, 115, 174, 489, 531, 985, 1019, 1206
DinI GGCGCC 1 cut(s) 784
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
Eam1104I CTCTTC 2 cut(s) 1170, 1298
EarI CTCTTC 2 cut(s) 1170, 1298
Eco24I GRGCYC 1 cut(s) 1273
Eco47I GGWCC 1 cut(s) 1046
Eco57I CTGAAG 2 cut(s) 258, 1322
Eco81I CCTNAGG 1 cut(s) 115
EcoNI CCTNNNNNAGG 1 cut(s) 1193
EcoO109I RGGNCCY 1 cut(s) 1269
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 2 cut(s) 67, 1121
EcoT38I GRGCYC 1 cut(s) 1273
EgeI GGCGCC 1 cut(s) 784
EheI GGCGCC 1 cut(s) 784
FaeI CATG 1 cut(s) 208
FalI AAGNNNNNCTT 2 cut(s) 112, 144
FaqI GGGAC 2 cut(s) 31, 702
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 1107
FokI GGATG 4 cut(s) 937, 973, 1096, 1309
FriOI GRGCYC 1 cut(s) 1273
Fsp4HI GCNGC 1 cut(s) 1107
FspBI CTAG 3 cut(s) 729, 735, 1116
GlaI GCGC 1 cut(s) 784
GluI GCNGC 1 cut(s) 1107
GsaI CCCAGC 1 cut(s) 606
GsuI CTGGAG 1 cut(s) 602
HaeII RGCGCY 1 cut(s) 786
HaeIII GGCC 1 cut(s) 1271
HapII CCGG 2 cut(s) 723, 788
HhaI GCGC 1 cut(s) 785
Hin1I GRCGYC 1 cut(s) 783
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 1 cut(s) 783
HinP1I GCGC 1 cut(s) 783
HindIII AAGCTT 1 cut(s) 388
HinfI GANTC 7 cut(s) 32, 623, 797, 940, 970, 1100, 1309
HpaII CCGG 2 cut(s) 723, 788
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 3 cut(s) 407, 445, 1016
Hpy188III TCNNGA 4 cut(s) 149, 614, 922, 1116
Hpy8I GTNNAC 3 cut(s) 407, 445, 1016
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 4 cut(s) 359, 425, 1051, 1074
HpyCH4III ACNGT 7 cut(s) 278, 442, 503, 1141, 1233, 1238, 1316
HpyCH4IV ACGT 2 cut(s) 110, 397
HpyCH4V TGCA 7 cut(s) 422, 432, 466, 716, 1016, 1109, 1184
HpyF10VI GCNNNNNNNGC 4 cut(s) 472, 670, 1277, 1297
HpyF3I CTNAG 8 cut(s) 28, 115, 174, 489, 531, 985, 1019, 1206
HpySE526I ACGT 2 cut(s) 110, 397
Hsp92I GRCGYC 1 cut(s) 783
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 1 cut(s) 783
KasI GGCGCC 1 cut(s) 782
Kzo9I GATC 1 cut(s) 348
Lsp1109I GCAGC 1 cut(s) 1093
LweI GCATC 1 cut(s) 1287
MaeI CTAG 3 cut(s) 729, 735, 1116
MaeII ACGT 2 cut(s) 110, 397
MaeIII GTNAC 3 cut(s) 503, 811, 1310
MalI GATC 1 cut(s) 350
MboI GATC 1 cut(s) 348
MboII GAAGA 7 cut(s) 120, 132, 251, 448, 1038, 1187, 1315
MhlI GDGCHC 4 cut(s) 532, 642, 1018, 1273
MluCI AATT 6 cut(s) 62, 187, 535, 757, 1145, 1166
Mly113I GGCGCC 1 cut(s) 783
MlyI GAGTC 6 cut(s) 41, 806, 949, 979, 1109, 1318
MmeI TCCRAC 1 cut(s) 772
MseI TTAA 4 cut(s) 341, 1089, 1169, 1191
MslI CAYNNNNRTG 3 cut(s) 14, 427, 1317
MspCI CTTAAG 1 cut(s) 340
MspI CCGG 2 cut(s) 723, 788
MspR9I CCNGG 3 cut(s) 69, 788, 1123
Mva1269I GAATGC 1 cut(s) 1186
MvaI CCWGG 2 cut(s) 69, 1123
MwoI GCNNNNNNNGC 4 cut(s) 472, 670, 1277, 1297
NarI GGCGCC 1 cut(s) 783
NciI CCSGG 1 cut(s) 788
NdeII GATC 1 cut(s) 348
NheI GCTAGC 1 cut(s) 728
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 4 cut(s) 618, 639, 784, 1271
NmuCI GTSAC 1 cut(s) 1310
OliI CACNNNNGTG 2 cut(s) 427, 1317
PctI GAATGC 1 cut(s) 1186
PfeI GAWTC 1 cut(s) 623
PkrI GCNGC 1 cut(s) 1108
PleI GAGTC 6 cut(s) 40, 805, 948, 978, 1108, 1317
PluTI GGCGCC 1 cut(s) 786
PpsI GAGTC 6 cut(s) 40, 805, 948, 978, 1108, 1317
Psp6I CCWGG 2 cut(s) 67, 1121
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 2 cut(s) 67, 1121
PspN4I GGNNCC 4 cut(s) 618, 639, 784, 1271
PspOMI GGGCCC 1 cut(s) 1269
PspPI GGNCC 3 cut(s) 1046, 1269, 1270
PstNI CAGNNNCTG 2 cut(s) 35, 1201
RsaI GTAC 2 cut(s) 739, 1235
RsaNI GTAC 2 cut(s) 738, 1234
RseI CAYNNNNRTG 3 cut(s) 14, 427, 1317
SaqAI TTAA 4 cut(s) 341, 1089, 1169, 1191
SatI GCNGC 1 cut(s) 1107
Sau3AI GATC 1 cut(s) 348
Sau96I GGNCC 3 cut(s) 1046, 1269, 1270
ScaI AGTACT 2 cut(s) 739, 1235
SchI GAGTC 6 cut(s) 41, 806, 949, 979, 1109, 1318
ScrFI CCNGG 3 cut(s) 69, 788, 1123
SduI GDGCHC 4 cut(s) 532, 642, 1018, 1273
SfaNI GCATC 1 cut(s) 1287
SfoI GGCGCC 1 cut(s) 784
SinI GGWCC 1 cut(s) 1046
SmiMI CAYNNNNRTG 3 cut(s) 14, 427, 1317
SmlI CTYRAG 3 cut(s) 340, 774, 1211
SmoI CTYRAG 3 cut(s) 340, 774, 1211
SpeI ACTAGT 1 cut(s) 734
Sse9I AATT 6 cut(s) 62, 187, 535, 757, 1145, 1166
SsiI CCGC 3 cut(s) 21, 336, 851
SspDI GGCGCC 1 cut(s) 782
SspMI CTAG 3 cut(s) 729, 735, 1116
StyD4I CCNGG 3 cut(s) 67, 786, 1121
TaaI ACNGT 7 cut(s) 278, 442, 503, 1141, 1233, 1238, 1316
TaiI ACGT 2 cut(s) 113, 400
TaqI TCGA 1 cut(s) 150
TasI AATT 6 cut(s) 62, 187, 535, 757, 1145, 1166
TatI WGTACW 2 cut(s) 737, 1233
TfiI GAWTC 1 cut(s) 623
Tru1I TTAA 4 cut(s) 341, 1089, 1169, 1191
Tru9I TTAA 4 cut(s) 341, 1089, 1169, 1191
TscAI CASTG 6 cut(s) 585, 639, 951, 1023, 1056, 1206
TseFI GTSAC 1 cut(s) 1310
TseI GCWGC 1 cut(s) 1106
Tsp45I GTSAC 1 cut(s) 1310
TspDTI ATGAA 2 cut(s) 215, 1232
TspRI CASTG 6 cut(s) 585, 639, 951, 1023, 1056, 1206
Vha464I CTTAAG 1 cut(s) 340
VneI GTGCAC 1 cut(s) 1014
VpaK11BI GGWCC 1 cut(s) 1046
XagI CCTNNNNNAGG 1 cut(s) 1193
XapI RAATTY 2 cut(s) 187, 535
XbaI TCTAGA 1 cut(s) 1115
XcmI CCANNNNNNNNNTGG 1 cut(s) 563
XspI CTAG 3 cut(s) 729, 735, 1116
ZrmI AGTACT 2 cut(s) 739, 1235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.