FvH4_6g20202

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015658
Physical Location & Seq
Forward (+)
13829333 .. 13830532
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20202.t1

Sequence Viewer

Length: 867 bp
ATGGCCAGGAAAGATGAGCTCGAGAAGCAGCGGCAACAGAAGCAACTGGTTCCGGCCTGCGATGGCTCTGTGCTCAACCGTCCTCCTTTTGACGACGAGCACTACTACCAGTCGCTTGATTCTGGTTCTCTCGAAAACGTTGTCCTCATTGAGATACTGACAAGACTACCAATCAAGTTTTTATTTCGATTTCGTGCTGTGTGCAAGTCGTGGTGTGCTTTCATCTCTAATTCTTCTAGTTTTAGTAGGAAGCATCTCAGCTATGGAGGCACCGATAGCAGCATCCTTTTTTCATTGATGCCTCCCCTCTCCGTAGACTGCAAAGCTTTATTGAAAGATGGTCTTGTTGAAGGCAGAAAGCTTAAACTACCAAACCGTTATAAACAGTACAAGTCCAGACCAAAGGTTGCGGAGATTGAGTGGGGCTACGTAGTCCTATGGAACCCATGTACTAGACAAGTTAACAGATTACCAAAGCAAACTCATGTTAAGAAGCCAACGTTTTACGGCTTCGGCTACGATTCAAGAACTGAAAGAGATTCTATGTTTGTATGCTTTGGCGACAATGCAAATACTAAAATCACTATATGGGAGACGAAGGAATATGGCATTGAGGATTCTTGGACCAATGTTGGACAAATTTCAAATTTGAGATTTCCTGCGGGGGAATATTATTATTCGCCGCTGAAAATTTTTCAGAATGGTAACTTTTTGATGGCTACATCCCGCGGCGGCTTGCTAGTACACGATCCAGAAAAGAAGACATTAGAGGTTAAGAAGCAGGCTAGCAATCAGAGGTCTGGCATTACCGGTGTTTTGCCGCCCATCGAGTACATGGAGACTTTAGTTTCACCATTCACAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

289

Amino Acids

33.01

Weight (kDa)

9.23

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 46 - 81 5.5e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AccB1I GGYRCC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 729
AciI CCGC 8 cut(s) 31, 410, 662, 683, 727, 729, 732, 821
AclI AACGTT 2 cut(s) 138, 500
AclWI GGATC 1 cut(s) 743
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 639, 646, 690
AfaI GTAC 4 cut(s) 389, 451, 744, 833
AgeI ACCGGT 1 cut(s) 809
AgsI TTSAA 4 cut(s) 334, 350, 525, 645
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 5 cut(s) 19, 261, 326, 361, 864
AluI AGCT 5 cut(s) 19, 261, 326, 361, 864
Alw21I GWGCWC 3 cut(s) 21, 75, 102
Alw26I GTCTC 2 cut(s) 587, 833
AlwI GGATC 1 cut(s) 743
Ama87I CYCGRG 1 cut(s) 20
AoxI GGCC 2 cut(s) 3, 54
ApeKI GCWGC 2 cut(s) 28, 279
ApoI RAATTY 3 cut(s) 639, 646, 690
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
AsiGI ACCGGT 1 cut(s) 809
AspS9I GGNCC 1 cut(s) 624
AsuHPI GGTGA 1 cut(s) 843
AsuNHI GCTAGC 1 cut(s) 785
AvaI CYCGRG 1 cut(s) 20
AvaII GGWCC 1 cut(s) 624
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 767
Bbv12I GWGCWC 3 cut(s) 21, 75, 102
BbvI GCAGC 2 cut(s) 40, 291
BccI CCATC 4 cut(s) 56, 332, 709, 833
BceAI ACGGC 1 cut(s) 523
BciT130I CCWGG 1 cut(s) 7
BcoDI GTCTC 2 cut(s) 587, 833
BfaI CTAG 4 cut(s) 237, 453, 740, 786
BisI GCNGC 7 cut(s) 29, 32, 280, 683, 730, 733, 821
BlsI GCNGC 7 cut(s) 30, 33, 281, 684, 731, 734, 822
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 624
BmeT110I CYCGRG 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 624
BmiI GGNNCC 3 cut(s) 51, 271, 443
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 3 cut(s) 262, 288, 291
BmtI GCTAGC 1 cut(s) 789
BpiI GAAGAC 1 cut(s) 767
BsaAI YACGTR 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 727
BsaWI WCCGGW 1 cut(s) 809
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bse118I RCCGGY 1 cut(s) 809
Bse1I ACTGG 2 cut(s) 51, 109
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 727
BseGI GGATG 2 cut(s) 282, 722
BseMII CTCAG 1 cut(s) 271
BseNI ACTGG 2 cut(s) 51, 109
BseXI GCAGC 2 cut(s) 40, 291
Bsh1236I CGCG 1 cut(s) 729
BshFI GGCC 2 cut(s) 5, 56
BshNI GGYRCC 1 cut(s) 269
BshTI ACCGGT 1 cut(s) 809
BsiHKAI GWGCWC 3 cut(s) 21, 75, 102
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 2 cut(s) 53, 810
BsmAI GTCTC 2 cut(s) 587, 833
BsmBI CGTCTC 1 cut(s) 587
BsnI GGCC 2 cut(s) 5, 56
BsoBI CYCGRG 1 cut(s) 20
Bsp1286I GDGCHC 3 cut(s) 21, 75, 102
Bsp143I GATC 1 cut(s) 748
BspACI CCGC 8 cut(s) 31, 410, 662, 683, 727, 729, 732, 821
BspANI GGCC 2 cut(s) 5, 56
BspCNI CTCAG 1 cut(s) 270
BspFNI CGCG 1 cut(s) 729
BspLI GGNNCC 3 cut(s) 51, 271, 443
BspOI GCTAGC 1 cut(s) 789
BspPI GGATC 1 cut(s) 743
BspT107I GGYRCC 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 809
BsrI ACTGG 2 cut(s) 51, 109
BssAI RCCGGY 1 cut(s) 809
BssECI CCNNGG 1 cut(s) 727
BssMI GATC 1 cut(s) 748
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 3 cut(s) 80, 377, 387
BstBAI YACGTR 1 cut(s) 430
BstC8I GCNNGC 4 cut(s) 58, 737, 783, 787
BstDEI CTNAG 1 cut(s) 257
BstDSI CCRYGG 1 cut(s) 727
BstF5I GGATG 2 cut(s) 282, 722
BstFNI CGCG 1 cut(s) 729
BstKTI GATC 1 cut(s) 751
BstMAI GTCTC 2 cut(s) 587, 833
BstMBI GATC 1 cut(s) 748
BstMWI GCNNNNNNNGC 4 cut(s) 25, 40, 267, 276
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstSNI TACGTA 1 cut(s) 430
BstUI CGCG 1 cut(s) 729
BstV1I GCAGC 2 cut(s) 40, 291
BstV2I GAAGAC 1 cut(s) 767
BsuRI GGCC 2 cut(s) 5, 56
BtgI CCRYGG 1 cut(s) 727
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 2 cut(s) 282, 722
Cac8I GCNNGC 4 cut(s) 58, 737, 783, 787
Cfr10I RCCGGY 1 cut(s) 809
Cfr13I GGNCC 1 cut(s) 624
Cfr42I CCGCGG 1 cut(s) 730
Csp6I GTAC 4 cut(s) 388, 450, 743, 832
CspAI ACCGGT 1 cut(s) 809
CviAII CATG 3 cut(s) 447, 485, 835
CviQI GTAC 4 cut(s) 388, 450, 743, 832
DdeI CTNAG 1 cut(s) 257
DpnI GATC 1 cut(s) 750
DpnII GATC 1 cut(s) 748
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 19
Eco105I TACGTA 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 624
Eco53kI GAGCTC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 587
FaeI CATG 3 cut(s) 450, 488, 838
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 3 cut(s) 446, 484, 834
FauI CCCGC 2 cut(s) 655, 734
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 7 cut(s) 29, 32, 280, 683, 730, 733, 821
FokI GGATG 2 cut(s) 269, 709
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 7 cut(s) 29, 32, 280, 683, 730, 733, 821
FspBI CTAG 4 cut(s) 237, 453, 740, 786
GluI GCNGC 7 cut(s) 29, 32, 280, 683, 730, 733, 821
HaeIII GGCC 2 cut(s) 5, 56
HapII CCGG 2 cut(s) 53, 810
Hin1II CATG 3 cut(s) 450, 488, 838
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 2 cut(s) 324, 359
HinfI GANTC 4 cut(s) 119, 521, 539, 617
HpaI GTTAAC 1 cut(s) 463
HpaII CCGG 2 cut(s) 53, 810
HphI GGTGA 1 cut(s) 843
Hpy166II GTNNAC 3 cut(s) 316, 463, 745
Hpy188I TCNGA 2 cut(s) 699, 795
Hpy188III TCNNGA 5 cut(s) 22, 131, 396, 525, 752
Hpy8I GTNNAC 3 cut(s) 316, 463, 745
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 344, 592
HpyCH4III ACNGT 3 cut(s) 80, 377, 387
HpyCH4IV ACGT 3 cut(s) 138, 429, 500
HpyCH4V TGCA 3 cut(s) 204, 321, 569
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 40, 267, 276
HpyF3I CTNAG 1 cut(s) 257
HpySE526I ACGT 3 cut(s) 138, 429, 500
Hsp92II CATG 3 cut(s) 450, 488, 838
KspAI GTTAAC 1 cut(s) 463
KspI CCGCGG 1 cut(s) 730
Kzo9I GATC 1 cut(s) 748
Lsp1109I GCAGC 2 cut(s) 40, 291
LweI GCATC 3 cut(s) 262, 288, 291
MaeI CTAG 4 cut(s) 237, 453, 740, 786
MaeII ACGT 3 cut(s) 138, 429, 500
MaeIII GTNAC 1 cut(s) 704
MalI GATC 1 cut(s) 750
MboI GATC 1 cut(s) 748
MboII GAAGA 2 cut(s) 225, 772
MhlI GDGCHC 3 cut(s) 21, 75, 102
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 229, 639, 646, 690
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 613
MnlI CCTC 8 cut(s) 93, 155, 260, 312, 317, 607, 763, 789
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 363, 462, 489, 774
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 31, 685, 729
MspI CCGG 2 cut(s) 53, 810
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 4 cut(s) 25, 40, 267, 276
NdeII GATC 1 cut(s) 748
NheI GCTAGC 1 cut(s) 785
NlaIII CATG 3 cut(s) 450, 488, 838
NlaIV GGNNCC 3 cut(s) 51, 271, 443
PaeR7I CTCGAG 1 cut(s) 20
PfeI GAWTC 4 cut(s) 119, 521, 539, 617
PinAI ACCGGT 1 cut(s) 809
PkrI GCNGC 7 cut(s) 30, 33, 281, 684, 731, 734, 822
Ppu21I YACGTR 1 cut(s) 430
PsiI TTATAA 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 21
Psp1406I AACGTT 2 cut(s) 138, 500
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 3 cut(s) 51, 271, 443
PspPI GGNCC 1 cut(s) 624
RsaI GTAC 4 cut(s) 389, 451, 744, 833
RsaNI GTAC 4 cut(s) 388, 450, 743, 832
SacI GAGCTC 1 cut(s) 21
SacII CCGCGG 1 cut(s) 730
SaqAI TTAA 4 cut(s) 363, 462, 489, 774
SatI GCNGC 7 cut(s) 29, 32, 280, 683, 730, 733, 821
Sau3AI GATC 1 cut(s) 748
Sau96I GGNCC 1 cut(s) 624
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 3 cut(s) 21, 75, 102
SfaNI GCATC 3 cut(s) 262, 288, 291
Sfr274I CTCGAG 1 cut(s) 20
Sfr303I CCGCGG 1 cut(s) 730
SgrBI CCGCGG 1 cut(s) 730
SinI GGWCC 1 cut(s) 624
SlaI CTCGAG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SnaBI TACGTA 1 cut(s) 430
Sse9I AATT 4 cut(s) 229, 639, 646, 690
SsiI CCGC 8 cut(s) 31, 410, 662, 683, 727, 729, 732, 821
SspI AATATT 1 cut(s) 671
SspMI CTAG 4 cut(s) 237, 453, 740, 786
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 5
TaaI ACNGT 3 cut(s) 80, 377, 387
TaiI ACGT 3 cut(s) 141, 432, 503
TaqI TCGA 4 cut(s) 21, 132, 187, 828
TasI AATT 4 cut(s) 229, 639, 646, 690
TatI WGTACW 4 cut(s) 387, 449, 742, 831
TauI GCSGC 5 cut(s) 34, 685, 732, 735, 823
TfiI GAWTC 4 cut(s) 119, 521, 539, 617
Tru1I TTAA 4 cut(s) 363, 462, 489, 774
Tru9I TTAA 4 cut(s) 363, 462, 489, 774
TseI GCWGC 2 cut(s) 28, 279
TspDTI ATGAA 2 cut(s) 211, 282
TspGWI ACGGA 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 624
XapI RAATTY 3 cut(s) 639, 646, 690
XcmI CCANNNNNNNNNTGG 1 cut(s) 832
XhoI CTCGAG 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 4 cut(s) 237, 453, 740, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.