Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0015658

Physical Location & Seq

Genomic Coordinates Reverse (-)

28350195 .. 28351094

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00405900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCCTCCCCTCTCCGTAGACTGCGAAGCTTTATTGAAGAAAGATGGTCCTGTTCAAGGCAGAAAGCTTAAACTACCAAACCGTTATAAACAGCACCGGCGAACGACTGGCAGTTTAAAACGTGAGGTTGCGAATATTGTTGTGGGTTCTTGCAATGGCTTGATATGTCTTCTATTAAAATGGGGCTACCTTGTCTTATGGAACCCTTGTACTAGAAAAGTCAACAAATTACCGAAGCAAACTCATGTTAAGACACATCAAACGTTTTACGGTTTCGGCTACGATTCCTGCACTGAAAGGTACAAGATCATTCTGGGGGACATGCCCTCTATGCCTAAAACATTAGCCCATACGGCAATTTTTACAACATCATGGAGGAATTTTGATGACGTTCAAATTCATAACGAAATATATGGTCGTGGATGCTTACTAAACGGAGCTCTACATTGGATAGAGAGTGCCCAATGGGATGCCATCGACGATGACCATAGTGGATCATCAAGATTGAGTATCATCTCTTTTGATTTGGCAGAGGAGAAATTTCAGAAGCTGGTGTCGTTACCCTCTCTTGTAACCAAAGATACGAGCGCAAAAGTTTGGACTTCTAGAGATTCCATCTTTGTATGCTTTTGGAATGGTACAGTCCGTACAGAGACTAAATTGACAATATGGGAGATGAAGGAATATGGGATTGAGGATTCCTGGACCAATGTTGGGCATATTTCATTCAACAGTCATCCCGAGTGTTATTGGCCGCTGAAATTTTTTGAGGATGGTAACTTTTTGATGACTATATGCGGGGGCTTGCTAGTATATGATCCGGAGAAGAAGATAATCAGATCTAACAGTGATTTGCCCATCTTGTACATGGAGACTTTAGTTTCACCATTCACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

299

Amino Acids

34.24

Weight (kDa)

8.29

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	41 - 227	4.2e-16	F-box associated beta propeller domain
FBA_1	PF07734	42 - 261	8e-24	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015658)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20202
rosa_chinensis	RchiOBHm_Chr2g0110611 RchiOBHm_Chr3g0475741 RchiOBHm_Chr4g0403441 RchiOBHm_Chr4g0436211 RchiOBHm_Chr5g0080041 RchiOBHm_Chr6g0263871 RchiOBHm_Chr7g0206081
rosa_laevigata	RLG00000015933 RLG00000023820 RLG00000035556
rosa_multiflora	Rmu_sc0000539.1_g000073
rosa_roxburghii	Rroxscaffold_6G00405900
rosa_rugosa	Rorug03G0151100
rosa_samantha	Rh5AG521600
rosa_wichuraiana	Rw3G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AccI	GTMKAC	1 cut(s)	18
AccIII	TCCGGA	1 cut(s)	820
AciI	CCGC	2 cut(s)	755, 798
AclI	AACGTT	1 cut(s)	263
AclWI	GGATC	2 cut(s)	502, 812
AcoI	YGGCCR	1 cut(s)	752
AcsI	RAATTY	4 cut(s)	379, 396, 539, 761
AfaI	GTAC	5 cut(s)	211, 302, 640, 649, 866
AfiI	CCNNNNNNNGG	2 cut(s)	56, 714
AgsI	TTSAA	4 cut(s)	37, 56, 395, 730
AjnI	CCWGG	1 cut(s)	701
AluBI	AGCT	5 cut(s)	29, 67, 440, 550, 897
AluI	AGCT	5 cut(s)	29, 67, 440, 550, 897
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	2 cut(s)	647, 866
AlwI	GGATC	2 cut(s)	502, 812
AlwNI	CAGNNNCTG	1 cut(s)	550
Ama87I	CYCGRG	1 cut(s)	740
Aor13HI	TCCGGA	1 cut(s)	820
AoxI	GGCC	1 cut(s)	752
ApoI	RAATTY	4 cut(s)	379, 396, 539, 761
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	2 cut(s)	47, 705
AsuHPI	GGTGA	2 cut(s)	876, 883
AvaI	CYCGRG	1 cut(s)	740
AvaII	GGWCC	2 cut(s)	47, 705
BaeGI	GKGCMC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	442
BbsI	GAAGAC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	442
BccI	CCATC	5 cut(s)	38, 482, 623, 767, 866
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	703
BcoDI	GTCTC	2 cut(s)	647, 866
BfaI	CTAG	3 cut(s)	213, 606, 809
BglI	GCCNNNNNGGC	1 cut(s)	353
BglII	AGATCT	1 cut(s)	839
BisI	GCNGC	1 cut(s)	755
BlsI	GCNGC	1 cut(s)	756
Bme1390I	CCNGG	1 cut(s)	703
Bme18I	GGWCC	2 cut(s)	47, 705
BmeT110I	CYCGRG	1 cut(s)	740
BmgT120I	GGNCC	2 cut(s)	47, 705
BmiI	GGNNCC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	703
BmsI	GCATC	2 cut(s)	413, 460
BpiI	GAAGAC	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	820
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 714
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	160
BseAI	TCCGGA	1 cut(s)	820
BseBI	CCWGG	1 cut(s)	703
BseGI	GGATG	4 cut(s)	428, 475, 736, 778
BseLI	CCNNNNNNNGG	2 cut(s)	56, 714
BseMI	GCAATG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	548
BseSI	GKGCMC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	754
BsiHKAI	GWGCWC	1 cut(s)	442
BsiHKCI	CYCGRG	1 cut(s)	740
BsiSI	CCGG	2 cut(s)	97, 821
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	56, 714
BsmAI	GTCTC	2 cut(s)	647, 866
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	754
BsoBI	CYCGRG	1 cut(s)	740
Bsp1286I	GDGCHC	2 cut(s)	442, 463
Bsp13I	TCCGGA	1 cut(s)	820
Bsp1407I	TGTACA	1 cut(s)	864
Bsp143I	GATC	4 cut(s)	306, 494, 817, 839
BspACI	CCGC	2 cut(s)	755, 798
BspANI	GGCC	1 cut(s)	754
BspEI	TCCGGA	1 cut(s)	820
BspLI	GGNNCC	1 cut(s)	203
BspPI	GGATC	2 cut(s)	502, 812
BsrDI	GCAATG	1 cut(s)	160
BsrFI	RCCGGY	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	864
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	96
BssMI	GATC	4 cut(s)	306, 494, 817, 839
Bst2UI	CCWGG	1 cut(s)	703
Bst4CI	ACNGT	5 cut(s)	83, 272, 643, 734, 848
BstAUI	TGTACA	1 cut(s)	864
BstC8I	GCNNGC	1 cut(s)	806
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	4 cut(s)	428, 475, 736, 778
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	4 cut(s)	309, 497, 820, 842
BstMAI	GTCTC	2 cut(s)	647, 866
BstMBI	GATC	4 cut(s)	306, 494, 817, 839
BstMWI	GCNNNNNNNGC	2 cut(s)	331, 353
BstNI	CCWGG	1 cut(s)	703
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	701
BstSLI	GKGCMC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	839
BstYI	RGATCY	1 cut(s)	839
BsuRI	GGCC	1 cut(s)	754
BtsCI	GGATG	4 cut(s)	428, 475, 736, 778
BtsIMutI	CAGTG	2 cut(s)	291, 853
Cac8I	GCNNGC	1 cut(s)	806
CaiI	CAGNNNCTG	1 cut(s)	550
CfoI	GCGC	1 cut(s)	590
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	47, 705
Csp6I	GTAC	5 cut(s)	210, 301, 639, 648, 865
CviAII	CATG	4 cut(s)	245, 322, 372, 868
CviQI	GTAC	5 cut(s)	210, 301, 639, 648, 865
DpnI	GATC	4 cut(s)	308, 496, 819, 841
DpnII	GATC	4 cut(s)	306, 494, 817, 839
DraI	TTTAAA	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	752
Ecl136II	GAGCTC	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	442
Eco47I	GGWCC	2 cut(s)	47, 705
Eco53kI	GAGCTC	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	740
EcoICRI	GAGCTC	1 cut(s)	440
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	701
EcoT38I	GRGCYC	1 cut(s)	442
FaeI	CATG	4 cut(s)	248, 325, 375, 871
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	4 cut(s)	244, 321, 371, 867
FauI	CCCGC	1 cut(s)	791
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	755
FokI	GGATG	4 cut(s)	435, 482, 723, 785
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	1 cut(s)	755
FspBI	CTAG	3 cut(s)	213, 606, 809
GlaI	GCGC	1 cut(s)	589
GluI	GCNGC	1 cut(s)	755
HaeIII	GGCC	1 cut(s)	754
HapII	CCGG	2 cut(s)	97, 821
HhaI	GCGC	1 cut(s)	590
Hin1II	CATG	4 cut(s)	248, 325, 375, 871
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	2 cut(s)	27, 65
HinfI	GANTC	3 cut(s)	284, 611, 698
HpaII	CCGG	2 cut(s)	97, 821
HphI	GGTGA	2 cut(s)	876, 883
Hpy166II	GTNNAC	2 cut(s)	19, 223
Hpy188I	TCNGA	2 cut(s)	546, 839
Hpy188III	TCNNGA	4 cut(s)	501, 606, 740, 821
Hpy8I	GTNNAC	2 cut(s)	19, 223
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	1 cut(s)	673
HpyCH4III	ACNGT	5 cut(s)	83, 272, 643, 734, 848
HpyCH4IV	ACGT	3 cut(s)	121, 263, 390
HpyCH4V	TGCA	2 cut(s)	153, 291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	331, 353
HpySE526I	ACGT	3 cut(s)	121, 263, 390
Hsp92II	CATG	4 cut(s)	248, 325, 375, 871
HspAI	GCGC	1 cut(s)	588
Kpn2I	TCCGGA	1 cut(s)	820
Kzo9I	GATC	4 cut(s)	306, 494, 817, 839
LmnI	GCTCC	1 cut(s)	437
LpnPI	CCDG	9 cut(s)	63, 93, 110, 299, 301, 536, 688, 715, 834
LweI	GCATC	2 cut(s)	413, 460
MaeI	CTAG	3 cut(s)	213, 606, 809
MaeII	ACGT	3 cut(s)	121, 263, 390
MaeIII	GTNAC	3 cut(s)	558, 571, 776
MalI	GATC	4 cut(s)	308, 496, 819, 841
MboI	GATC	4 cut(s)	306, 494, 817, 839
MboII	GAAGA	4 cut(s)	49, 161, 838, 841
MflI	RGATCY	1 cut(s)	839
MhlI	GDGCHC	2 cut(s)	442, 463
MluCI	AATT	7 cut(s)	227, 357, 379, 396, 539, 659, 761
MnlI	CCTC	9 cut(s)	15, 20, 118, 337, 369, 526, 574, 688, 763
MroI	TCCGGA	1 cut(s)	820
MseI	TTAA	4 cut(s)	69, 116, 176, 249
MspA1I	CMGCKG	2 cut(s)	757, 897
MspI	CCGG	2 cut(s)	97, 821
MspR9I	CCNGG	1 cut(s)	703
MvaI	CCWGG	1 cut(s)	703
MwoI	GCNNNNNNNGC	2 cut(s)	331, 353
NdeII	GATC	4 cut(s)	306, 494, 817, 839
NlaIII	CATG	4 cut(s)	248, 325, 375, 871
NlaIV	GGNNCC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	284, 611, 698
PfoI	TCCNGGA	1 cut(s)	701
PkrI	GCNGC	1 cut(s)	756
PsiI	TTATAA	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	442
Psp1406I	AACGTT	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	701
PspGI	CCWGG	1 cut(s)	701
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	2 cut(s)	47, 705
PstNI	CAGNNNCTG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	839
PvuII	CAGCTG	1 cut(s)	897
RsaI	GTAC	5 cut(s)	211, 302, 640, 649, 866
RsaNI	GTAC	5 cut(s)	210, 301, 639, 648, 865
SacI	GAGCTC	1 cut(s)	442
SaqAI	TTAA	4 cut(s)	69, 116, 176, 249
SatI	GCNGC	1 cut(s)	755
Sau3AI	GATC	4 cut(s)	306, 494, 817, 839
Sau96I	GGNCC	2 cut(s)	47, 705
ScrFI	CCNGG	1 cut(s)	703
SduI	GDGCHC	2 cut(s)	442, 463
SfaNI	GCATC	2 cut(s)	413, 460
SgrAI	CRCCGGYG	1 cut(s)	96
SinI	GGWCC	2 cut(s)	47, 705
Sse9I	AATT	7 cut(s)	227, 357, 379, 396, 539, 659, 761
SsiI	CCGC	2 cut(s)	755, 798
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	3 cut(s)	213, 606, 809
SstI	GAGCTC	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	701
TaaI	ACNGT	5 cut(s)	83, 272, 643, 734, 848
TaiI	ACGT	3 cut(s)	124, 266, 393
TaqI	TCGA	1 cut(s)	477
TasI	AATT	7 cut(s)	227, 357, 379, 396, 539, 659, 761
TatI	WGTACW	2 cut(s)	209, 864
TauI	GCSGC	1 cut(s)	757
TfiI	GAWTC	3 cut(s)	284, 611, 698
Tru1I	TTAA	4 cut(s)	69, 116, 176, 249
Tru9I	TTAA	4 cut(s)	69, 116, 176, 249
TscAI	CASTG	2 cut(s)	298, 853
TspDTI	ATGAA	3 cut(s)	389, 692, 714
TspGWI	ACGGA	3 cut(s)	4, 450, 635
TspRI	CASTG	2 cut(s)	298, 853
VpaK11BI	GGWCC	2 cut(s)	47, 705
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	4 cut(s)	379, 396, 539, 761
XbaI	TCTAGA	1 cut(s)	605
XceI	RCATGY	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	865
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	3 cut(s)	213, 606, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.