Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015658

Physical Location & Seq

Genomic Coordinates Reverse (-)

28659732 .. 28661943

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023820

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCAAGGAAAGATGAGCTCGAGAAGCGGCGGCAGCAGAACCAACTGGTTCCCTCGGCTTGCGGCAGCTGTGTGCTTAAACGTCCTCCTTTTGACGACGAGTACTACTACCAGTCGCTAGATACTGATTCGATTCTTTGTTGGAGTTTCGCTGCTTTCAATGTTTATCCTCTGTTGCCTTCAGCCACTGTTGGTATAGTAAGATGGGTTTGCCCGCTAGCGTACTTGGGTCAGAATTTGTTGGTGCAACATTGGATTGTTTACCCTTTGGGCGGCTGTCCTTTTGATCCATTTGTGGATTTGTTTCTTTGCCTTCTTGCTATGGATTTTATGGTTCTTCCTTTGGCTGTGGAAGATTTCTCCGATGCGGAGATGATTGAGGTTTACTGCTCCCTCTTGTGTGTCTGGACTTGGGATTTTTGGGTGCTCTCTATTGGGATTATCGTCGTCTCCTCCCAAGCTCTCCAAATCTGGTTAGATATATATTGTTCATGCAAATTGGTGCAAATTTTGTCCGTGCTGGTGCTATCCTTGAGGCAGCGTCCGTTGCTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.14

Weight (kDa)

4.5

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015658)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20202
rosa_chinensis	RchiOBHm_Chr2g0110611 RchiOBHm_Chr3g0475741 RchiOBHm_Chr4g0403441 RchiOBHm_Chr4g0436211 RchiOBHm_Chr5g0080041 RchiOBHm_Chr6g0263871 RchiOBHm_Chr7g0206081
rosa_laevigata	RLG00000015933 RLG00000023820 RLG00000035556
rosa_multiflora	Rmu_sc0000539.1_g000073
rosa_roxburghii	Rroxscaffold_6G00405900
rosa_rugosa	Rorug03G0151100
rosa_samantha	Rh5AG521600
rosa_wichuraiana	Rw3G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	28, 31, 63, 215, 273, 368
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	2 cut(s)	235, 507
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	104, 224
AfiI	CCNNNNNNNGG	2 cut(s)	272, 551
AgsI	TTSAA	1 cut(s)	160
AluBI	AGCT	3 cut(s)	19, 69, 461
AluI	AGCT	3 cut(s)	19, 69, 461
Alw21I	GWGCWC	2 cut(s)	21, 429
Alw26I	GTCTC	1 cut(s)	454
AlwI	GGATC	1 cut(s)	281
AlwNI	CAGNNNCTG	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	20
ApeKI	GCWGC	4 cut(s)	34, 66, 152, 538
ApoI	RAATTY	2 cut(s)	235, 507
AsuNHI	GCTAGC	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	21
Bbv12I	GWGCWC	2 cut(s)	21, 429
BbvI	GCAGC	4 cut(s)	46, 78, 139, 550
BccI	CCATC	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	454
BfaI	CTAG	3 cut(s)	119, 218, 556
BisI	GCNGC	8 cut(s)	29, 32, 35, 64, 67, 153, 274, 539
BlsI	GCNGC	8 cut(s)	30, 33, 36, 65, 68, 154, 275, 540
BmcAI	AGTACT	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	51
BmsI	GCATC	1 cut(s)	355
BmtI	GCTAGC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	553
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 551
Bse1I	ACTGG	2 cut(s)	51, 112
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	272, 551
BseNI	ACTGG	2 cut(s)	51, 112
BseRI	GAGGAG	1 cut(s)	442
BseXI	GCAGC	4 cut(s)	46, 78, 139, 550
BsiHKAI	GWGCWC	2 cut(s)	21, 429
BsiHKCI	CYCGRG	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	272, 551
BsmAI	GTCTC	1 cut(s)	454
BsmBI	CGTCTC	1 cut(s)	454
BsoBI	CYCGRG	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	21, 429
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	6 cut(s)	28, 31, 63, 215, 273, 368
BspLI	GGNNCC	1 cut(s)	51
BspOI	GCTAGC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	51, 112
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	190
BstC8I	GCNNGC	3 cut(s)	61, 215, 219
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 34, 547
BstV1I	GCAGC	4 cut(s)	46, 78, 139, 550
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	3 cut(s)	61, 215, 219
CaiI	CAGNNNCTG	1 cut(s)	188
CseI	GACGC	1 cut(s)	530
Csp6I	GTAC	2 cut(s)	103, 223
CviAII	CATG	1 cut(s)	492
CviJI	RGCY	8 cut(s)	19, 59, 69, 185, 276, 347, 461, 555
CviKI_1	RGCY	8 cut(s)	19, 59, 69, 185, 276, 347, 461, 555
CviQI	GTAC	2 cut(s)	103, 223
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	20
EcoICRI	GAGCTC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	454
FaeI	CATG	1 cut(s)	495
FaiI	YATR	6 cut(s)	197, 323, 332, 482, 484, 493
FatI	CATG	1 cut(s)	491
FauI	CCCGC	1 cut(s)	222
Fnu4HI	GCNGC	8 cut(s)	29, 32, 35, 64, 67, 153, 274, 539
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	8 cut(s)	29, 32, 35, 64, 67, 153, 274, 539
FspBI	CTAG	3 cut(s)	119, 218, 556
GluI	GCNGC	8 cut(s)	29, 32, 35, 64, 67, 153, 274, 539
HgaI	GACGC	1 cut(s)	530
Hin1II	CATG	1 cut(s)	495
HinfI	GANTC	2 cut(s)	128, 133
Hpy166II	GTNNAC	2 cut(s)	262, 385
Hpy188I	TCNGA	2 cut(s)	234, 364
Hpy188III	TCNNGA	2 cut(s)	22, 406
Hpy8I	GTNNAC	2 cut(s)	262, 385
Hpy99I	CGWCG	2 cut(s)	101, 449
HpyAV	CCTTC	2 cut(s)	189, 323
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	3 cut(s)	247, 495, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 34, 547
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	495
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	395
LpnPI	CCDG	5 cut(s)	32, 125, 391, 457, 506
Lsp1109I	GCAGC	4 cut(s)	46, 78, 139, 550
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	3 cut(s)	119, 218, 556
MaeII	ACGT	1 cut(s)	82
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	2 cut(s)	329, 365
MhlI	GDGCHC	2 cut(s)	21, 429
MluCI	AATT	3 cut(s)	235, 497, 507
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	7 cut(s)	64, 96, 180, 373, 404, 463, 528
MseI	TTAA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	25, 34, 547
NdeII	GATC	1 cut(s)	286
NheI	GCTAGC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	495
NlaIV	GGNNCC	1 cut(s)	51
NmeAIII	GCCGAG	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	128, 133
PkrI	GCNGC	8 cut(s)	30, 33, 36, 65, 68, 154, 275, 540
Psp124BI	GAGCTC	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	69
RsaI	GTAC	2 cut(s)	104, 224
RsaNI	GTAC	2 cut(s)	103, 223
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	8 cut(s)	29, 32, 35, 64, 67, 153, 274, 539
Sau3AI	GATC	1 cut(s)	286
ScaI	AGTACT	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	21, 429
SetI	ASST	5 cut(s)	21, 71, 85, 384, 463
SfaNI	GCATC	1 cut(s)	355
Sfr274I	CTCGAG	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	20
SmlI	CTYRAG	2 cut(s)	20, 532
SmoI	CTYRAG	2 cut(s)	20, 532
Sse9I	AATT	3 cut(s)	235, 497, 507
SsiI	CCGC	6 cut(s)	28, 31, 63, 215, 273, 368
SspMI	CTAG	3 cut(s)	119, 218, 556
SstI	GAGCTC	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	21, 131
TasI	AATT	3 cut(s)	235, 497, 507
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	4 cut(s)	31, 34, 66, 276
TfiI	GAWTC	2 cut(s)	128, 133
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	4 cut(s)	34, 66, 152, 538
TspDTI	ATGAA	1 cut(s)	480
TspGWI	ACGGA	2 cut(s)	505, 534
TspRI	CASTG	1 cut(s)	193
XapI	RAATTY	2 cut(s)	235, 507
XhoI	CTCGAG	1 cut(s)	20
XspI	CTAG	3 cut(s)	119, 218, 556
ZrmI	AGTACT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.