RLG00000015933

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015658
Physical Location & Seq
Forward (+)
2562498 .. 2563042
545 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015933

Sequence Viewer

Length: 384 bp
ATGGGTTGGATCCAAATTGTGCAACACAGGATTGTCCCTTTGGGTGGCTATCCGGTAGATCCCTTTGTGGATCTGTTTACTTTTCGTCTTGCTTCGGCTCTTATGGTTTCTACTTTGGCGATGGAAGATGTTCTCCATTCCGGAGATAATCTGAGATTTGTGACTCCTTGTGTGTTTGGAATTGGGATGTTCCAGTGCTCTCATTTGAGTTCGTTGTTGGCTCTTTCCAAGCTTTTCAACTCTGGCCCGATGATGTTCTTCAAAATTGGTGTGAATTCTATTCGTGGTGGTGCTATCGCTGTGGCAGCGTCCGTTGCTTGGCTAGATTGGGGTTTGGATGGATTGGGCTCGCCTGATTGCTCTTTGCCAAAAAAAAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.72

Weight (kDa)

7.76

Isoelectric Point (pI)

16.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 140
AclWI GGATC 4 cut(s) 4, 17, 53, 78
AcsI RAATTY 1 cut(s) 274
AfiI CCNNNNNNNGG 2 cut(s) 44, 318
AgsI TTSAA 2 cut(s) 238, 262
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw21I GWGCWC 1 cut(s) 200
AlwI GGATC 4 cut(s) 4, 17, 53, 78
Aor13HI TCCGGA 1 cut(s) 140
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 274
Asp700I GAANNNNTTC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 245
BamHI GGATCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 317
BccI CCATC 2 cut(s) 115, 332
BfaI CTAG 1 cut(s) 323
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 11
BsaWI WCCGGW 2 cut(s) 52, 140
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 318
Bse1I ACTGG 1 cut(s) 193
BseAI TCCGGA 1 cut(s) 140
BseGI GGATG 2 cut(s) 192, 343
BseLI CCNNNNNNNGG 2 cut(s) 44, 318
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 317
BshFI GGCC 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 2 cut(s) 53, 141
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 2 cut(s) 44, 318
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 1 cut(s) 246
Bsp1286I GDGCHC 2 cut(s) 200, 350
Bsp13I TCCGGA 1 cut(s) 140
Bsp143I GATC 3 cut(s) 9, 58, 70
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 144
BspEI TCCGGA 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 4 cut(s) 4, 17, 53, 78
BsrI ACTGG 1 cut(s) 193
BssMI GATC 3 cut(s) 9, 58, 70
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 2 cut(s) 192, 343
BstKTI GATC 3 cut(s) 12, 61, 73
BstMBI GATC 3 cut(s) 9, 58, 70
BstMWI GCNNNNNNNGC 2 cut(s) 305, 314
BstV1I GCAGC 1 cut(s) 317
BstX2I RGATCY 3 cut(s) 9, 58, 70
BstYI RGATCY 3 cut(s) 9, 58, 70
BsuRI GGCC 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 134
BtsCI GGATG 2 cut(s) 192, 343
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 245
CseI GACGC 1 cut(s) 297
CviJI RGCY 7 cut(s) 48, 98, 221, 232, 246, 322, 348
CviKI_1 RGCY 7 cut(s) 48, 98, 221, 232, 246, 322, 348
DdeI CTNAG 1 cut(s) 152
DpnI GATC 3 cut(s) 11, 60, 72
DpnII GATC 3 cut(s) 9, 58, 70
Eco24I GRGCYC 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 350
FaiI YATR 1 cut(s) 104
FaqI GGGAC 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 2 cut(s) 199, 350
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 323
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 1 cut(s) 246
HapII CCGG 2 cut(s) 53, 141
HgaI GACGC 1 cut(s) 297
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 1 cut(s) 163
HpaII CCGG 2 cut(s) 53, 141
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 141
Hpy8I GTNNAC 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 314
HpyF3I CTNAG 1 cut(s) 152
Kpn2I TCCGGA 1 cut(s) 140
Kzo9I GATC 3 cut(s) 9, 58, 70
LpnPI CCDG 6 cut(s) 13, 66, 154, 206, 228, 366
Lsp1109I GCAGC 1 cut(s) 317
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 11, 60, 72
MboI GATC 3 cut(s) 9, 58, 70
MboII GAAGA 2 cut(s) 137, 250
MflI RGATCY 3 cut(s) 9, 58, 70
MhlI GDGCHC 2 cut(s) 200, 350
MluCI AATT 5 cut(s) 15, 180, 264, 274, 379
MlyI GAGTC 1 cut(s) 157
MroI TCCGGA 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 1 cut(s) 382
MspI CCGG 2 cut(s) 53, 141
MwoI GCNNNNNNNGC 2 cut(s) 305, 314
NdeII GATC 3 cut(s) 9, 58, 70
NlaIV GGNNCC 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 129
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 245
PsuI RGATCY 3 cut(s) 9, 58, 70
SaqAI TTAA 1 cut(s) 382
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 3 cut(s) 9, 58, 70
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 1 cut(s) 157
SduI GDGCHC 2 cut(s) 200, 350
SetI ASST 1 cut(s) 234
Sse9I AATT 5 cut(s) 15, 180, 264, 274, 379
SspMI CTAG 1 cut(s) 323
TasI AATT 5 cut(s) 15, 180, 264, 274, 379
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
TscAI CASTG 1 cut(s) 200
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 160
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 1 cut(s) 200
XapI RAATTY 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.